ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart38e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HAT1_ARATH (P46600) Homeobox-leucine zipper protein HAT1 (HD-ZIP... 32 0.79
2HAT4_ARATH (Q05466) Homeobox-leucine zipper protein HAT4 (HD-ZIP... 30 5.1
3ATHB4_ARATH (P92953) Homeobox-leucine zipper protein ATHB-4 (HD-... 29 6.7

>HAT1_ARATH (P46600) Homeobox-leucine zipper protein HAT1 (HD-ZIP protein 1)|
          Length = 282

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
 Frame = +2

Query: 266 ALSSVVGLPQDCGVPRKEEP------GMRTSTSPESGVSGGTKRGLLDRTXXXXXXXXXX 427
           +L + V L ++ GV            G R ST  E G SGG   G  D            
Sbjct: 64  SLPTTVDLEEETGVSSPNSTISSTVSGKRRSTERE-GTSGG---GCGDDLDITLDRSSSR 119

Query: 428 XXXXXXXXXXXXXXRKKLRLSKDQAAVLE 514
                         RKKLRLSKDQ+AVLE
Sbjct: 120 GTSDEEEDYGGETCRKKLRLSKDQSAVLE 148



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>HAT4_ARATH (Q05466) Homeobox-leucine zipper protein HAT4 (HD-ZIP protein 4)|
           (HD-ZIP protein ATHB-2)
          Length = 284

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +2

Query: 470 RKKLRLSKDQAAVLE 514
           RKKLRLSKDQ+A+LE
Sbjct: 128 RKKLRLSKDQSAILE 142



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>ATHB4_ARATH (P92953) Homeobox-leucine zipper protein ATHB-4 (HD-ZIP protein|
           ATHB-4)
          Length = 318

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +2

Query: 470 RKKLRLSKDQAAVLE 514
           RKKLRLSKDQA VLE
Sbjct: 162 RKKLRLSKDQALVLE 176


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,443,175
Number of Sequences: 219361
Number of extensions: 408217
Number of successful extensions: 855
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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