ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart38d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetati... 118 1e-26
2S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetati... 117 2e-26
3VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetati... 117 2e-26
4PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (A... 112 8e-25
5VSP1_ARATH (O49195) Vegetative storage protein 1 precursor 102 1e-21
6VSP2_ARATH (O82122) Vegetative storage protein 2 precursor 101 1e-21
7CYF_PSINU (Q8WI07) Apocytochrome f precursor 34 0.36
8HEL_HAEIN (P26093) Lipoprotein E precursor (Outer membrane prote... 33 0.62
9MMPL8_MYCTU (O07800) Putative membrane protein mmpL8 31 3.1
10RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2... 30 5.2
11RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2... 29 8.9

>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein B)
          Length = 254

 Score =  118 bits (295), Expect = 1e-26
 Identities = 62/135 (45%), Positives = 83/135 (61%), Gaps = 1/135 (0%)
 Frame = +2

Query: 185 LRPLLGSGKHAG-VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVID 361
           LR   G G+ +  V C S+ L VEAHN+R +KT+P  C      Y+ G  FR DSK V  
Sbjct: 28  LRMKTGYGERSSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQ 87

Query: 362 QALAYVDSLKLAGNGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPA 541
           QA  Y    ++  N  ++++F ID T LSN+PYY KHG+G   FN T ++ +V +G APA
Sbjct: 88  QAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPA 145

Query: 542 LPETKRLYNKLRSIG 586
           LPET + YNKL S+G
Sbjct: 146 LPETLKNYNKLLSLG 160



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>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein VSP25) (Fragment)
          Length = 291

 Score =  117 bits (293), Expect = 2e-26
 Identities = 58/122 (47%), Positives = 79/122 (64%)
 Frame = +2

Query: 221 VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAG 400
           V C SW L VEAHN+  ++T+P  C      Y+ G  +R DSK V  QA  Y   L++  
Sbjct: 37  VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 94

Query: 401 NGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPETKRLYNKLRS 580
           + K+ +VF ID T LSN+PYY KHG+G   FN+T ++ +V +G+APALPET + YNKL S
Sbjct: 95  HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVS 154

Query: 581 IG 586
           +G
Sbjct: 155 LG 156



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>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage|
           protein A)
          Length = 254

 Score =  117 bits (293), Expect = 2e-26
 Identities = 58/122 (47%), Positives = 79/122 (64%)
 Frame = +2

Query: 221 VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAG 400
           V C SW L VEAHN+  ++T+P  C      Y+ G  +R DSK V  QA  Y   L++  
Sbjct: 40  VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 97

Query: 401 NGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPETKRLYNKLRS 580
           + K+ +VF ID T LSN+PYY KHG+G   FN+T ++ +V +G+APALPET + YNKL S
Sbjct: 98  HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVS 157

Query: 581 IG 586
           +G
Sbjct: 158 LG 159



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>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))|
          Length = 255

 Score =  112 bits (280), Expect = 8e-25
 Identities = 49/120 (40%), Positives = 75/120 (62%)
 Frame = +2

Query: 227 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAGNG 406
           C +W   VE +N+  WKT+P  C  YV  YM+G  ++ +   V D+A  Y  S+ L  +G
Sbjct: 43  CTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDG 102

Query: 407 KEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPETKRLYNKLRSIG 586
           ++VW+FD+DET LSNLPYY+ H +G   F+   F+ +V  G+APAL  + +LY ++  +G
Sbjct: 103 RDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLG 162



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>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor|
          Length = 270

 Score =  102 bits (253), Expect = 1e-21
 Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 2/123 (1%)
 Frame = +2

Query: 227 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLAGN 403
           C SW LGVE  N+ ++ TVPA+C+ YV  Y++ S  ++ DSK V  +A  Y   L L  +
Sbjct: 57  CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKND 116

Query: 404 GKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQG-SAPALPETKRLYNKLRS 580
              VW+FD+D+T LS++PYYAK+G+G       ++ +++  G S P LPET  LY  L  
Sbjct: 117 TINVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLE 176

Query: 581 IGV 589
           +G+
Sbjct: 177 LGI 179



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>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor|
          Length = 265

 Score =  101 bits (252), Expect = 1e-21
 Identities = 50/123 (40%), Positives = 75/123 (60%), Gaps = 2/123 (1%)
 Frame = +2

Query: 227 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLAGN 403
           C SW LGVE  N+ D+ TVPA+C+ YV  Y++ S  ++ DSK V  +A  Y   L L  +
Sbjct: 52  CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKND 111

Query: 404 GKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQG-SAPALPETKRLYNKLRS 580
              VW+FD+D+T LS++PYYAK+G+G    +  ++  ++  G S P LPE   LY  +  
Sbjct: 112 TVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIE 171

Query: 581 IGV 589
           +G+
Sbjct: 172 LGI 174



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>CYF_PSINU (Q8WI07) Apocytochrome f precursor|
          Length = 321

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +2

Query: 116 VNIRMPTSAAD--VDEAVVA-PLIHALRPLLGSGKHAGVACDSWVLGVEAHNVRDWKTVP 286
           V+I +P S     V EAVV  P    ++ +LG+GK  G+   + ++  E   +  +  +P
Sbjct: 66  VDIEVPQSVFPNTVFEAVVKIPYDKQIKQVLGNGKKGGINVGAVLILPEGFELAPYNRIP 125

Query: 287 ASCEGYVGHYMLGSHFRRDSKVVI 358
           A  +  +G   L  ++R D + +I
Sbjct: 126 AEMKDKIGDLALFQNYRPDKRNII 149



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>HEL_HAEIN (P26093) Lipoprotein E precursor (Outer membrane protein P4) (OMP|
           P4)
          Length = 274

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
 Frame = +2

Query: 317 MLGSHFRRDSKVVIDQALAY---------VDSLKLAGNGKEVWVFDIDETTLSNLPYYAK 469
           +LG ++ +DS     +ALAY          D  K+A   K+  V D+DET L N PY   
Sbjct: 41  VLGLNWMQDSGEY--KALAYQAYNAAKVAFDHAKVAKGKKKAVVADLDETMLDNSPYAGW 98

Query: 470 HGFGATPFNATSFNAYVLQGSAPALPETKRLYNKLRS 580
                 PF+   +  +V    + A+P      N + S
Sbjct: 99  QVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNS 135



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>MMPL8_MYCTU (O07800) Putative membrane protein mmpL8|
          Length = 1089

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 245 GVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKL 394
           G+  +N  D KT+PAS E  +G+  L  HF   S ++I + L    S  L
Sbjct: 418 GLARYNYDDRKTLPASVESSIGYAALDKHF--PSNLIIPEYLFIQSSTDL 465



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>RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1120

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +2

Query: 170 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN-----VRDWKTVPASCEGYVGHYMLGSHF 334
           PL+   + ++G+G  A +A DS +  +   N     V   K    + EGY  HY L  ++
Sbjct: 591 PLLFPEKSIVGTGLEAKIAKDSGMTIISRTNGTVSYVSGTKIGIQNKEGYTIHYRLKKYY 650

Query: 335 RRDSKVVIDQ 364
           R +    I+Q
Sbjct: 651 RSNQDTCINQ 660



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>RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1081

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 170 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN 262
           PLI   RPL+G+G  A +A DS ++ +   N
Sbjct: 552 PLIFPERPLVGTGLEAQIAKDSGIMAISRSN 582


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,493,878
Number of Sequences: 219361
Number of extensions: 1028889
Number of successful extensions: 3944
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3931
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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