Clone Name | bart38d12 |
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Clone Library Name | barley_pub |
>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein B) Length = 254 Score = 118 bits (295), Expect = 1e-26 Identities = 62/135 (45%), Positives = 83/135 (61%), Gaps = 1/135 (0%) Frame = +2 Query: 185 LRPLLGSGKHAG-VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVID 361 LR G G+ + V C S+ L VEAHN+R +KT+P C Y+ G FR DSK V Sbjct: 28 LRMKTGYGERSSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQ 87 Query: 362 QALAYVDSLKLAGNGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPA 541 QA Y ++ N ++++F ID T LSN+PYY KHG+G FN T ++ +V +G APA Sbjct: 88 QAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPA 145 Query: 542 LPETKRLYNKLRSIG 586 LPET + YNKL S+G Sbjct: 146 LPETLKNYNKLLSLG 160
>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein VSP25) (Fragment) Length = 291 Score = 117 bits (293), Expect = 2e-26 Identities = 58/122 (47%), Positives = 79/122 (64%) Frame = +2 Query: 221 VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAG 400 V C SW L VEAHN+ ++T+P C Y+ G +R DSK V QA Y L++ Sbjct: 37 VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 94 Query: 401 NGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPETKRLYNKLRS 580 + K+ +VF ID T LSN+PYY KHG+G FN+T ++ +V +G+APALPET + YNKL S Sbjct: 95 HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVS 154 Query: 581 IG 586 +G Sbjct: 155 LG 156
>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage| protein A) Length = 254 Score = 117 bits (293), Expect = 2e-26 Identities = 58/122 (47%), Positives = 79/122 (64%) Frame = +2 Query: 221 VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAG 400 V C SW L VEAHN+ ++T+P C Y+ G +R DSK V QA Y L++ Sbjct: 40 VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 97 Query: 401 NGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPETKRLYNKLRS 580 + K+ +VF ID T LSN+PYY KHG+G FN+T ++ +V +G+APALPET + YNKL S Sbjct: 98 HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVS 157 Query: 581 IG 586 +G Sbjct: 158 LG 159
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 112 bits (280), Expect = 8e-25 Identities = 49/120 (40%), Positives = 75/120 (62%) Frame = +2 Query: 227 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAGNG 406 C +W VE +N+ WKT+P C YV YM+G ++ + V D+A Y S+ L +G Sbjct: 43 CTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDG 102 Query: 407 KEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPETKRLYNKLRSIG 586 ++VW+FD+DET LSNLPYY+ H +G F+ F+ +V G+APAL + +LY ++ +G Sbjct: 103 RDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLG 162
>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor| Length = 270 Score = 102 bits (253), Expect = 1e-21 Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 2/123 (1%) Frame = +2 Query: 227 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLAGN 403 C SW LGVE N+ ++ TVPA+C+ YV Y++ S ++ DSK V +A Y L L + Sbjct: 57 CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKND 116 Query: 404 GKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQG-SAPALPETKRLYNKLRS 580 VW+FD+D+T LS++PYYAK+G+G ++ +++ G S P LPET LY L Sbjct: 117 TINVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLE 176 Query: 581 IGV 589 +G+ Sbjct: 177 LGI 179
>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor| Length = 265 Score = 101 bits (252), Expect = 1e-21 Identities = 50/123 (40%), Positives = 75/123 (60%), Gaps = 2/123 (1%) Frame = +2 Query: 227 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLAGN 403 C SW LGVE N+ D+ TVPA+C+ YV Y++ S ++ DSK V +A Y L L + Sbjct: 52 CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKND 111 Query: 404 GKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQG-SAPALPETKRLYNKLRS 580 VW+FD+D+T LS++PYYAK+G+G + ++ ++ G S P LPE LY + Sbjct: 112 TVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIE 171 Query: 581 IGV 589 +G+ Sbjct: 172 LGI 174
>CYF_PSINU (Q8WI07) Apocytochrome f precursor| Length = 321 Score = 33.9 bits (76), Expect = 0.36 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = +2 Query: 116 VNIRMPTSAAD--VDEAVVA-PLIHALRPLLGSGKHAGVACDSWVLGVEAHNVRDWKTVP 286 V+I +P S V EAVV P ++ +LG+GK G+ + ++ E + + +P Sbjct: 66 VDIEVPQSVFPNTVFEAVVKIPYDKQIKQVLGNGKKGGINVGAVLILPEGFELAPYNRIP 125 Query: 287 ASCEGYVGHYMLGSHFRRDSKVVI 358 A + +G L ++R D + +I Sbjct: 126 AEMKDKIGDLALFQNYRPDKRNII 149
>HEL_HAEIN (P26093) Lipoprotein E precursor (Outer membrane protein P4) (OMP| P4) Length = 274 Score = 33.1 bits (74), Expect = 0.62 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 9/97 (9%) Frame = +2 Query: 317 MLGSHFRRDSKVVIDQALAY---------VDSLKLAGNGKEVWVFDIDETTLSNLPYYAK 469 +LG ++ +DS +ALAY D K+A K+ V D+DET L N PY Sbjct: 41 VLGLNWMQDSGEY--KALAYQAYNAAKVAFDHAKVAKGKKKAVVADLDETMLDNSPYAGW 98 Query: 470 HGFGATPFNATSFNAYVLQGSAPALPETKRLYNKLRS 580 PF+ + +V + A+P N + S Sbjct: 99 QVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNS 135
>MMPL8_MYCTU (O07800) Putative membrane protein mmpL8| Length = 1089 Score = 30.8 bits (68), Expect = 3.1 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = +2 Query: 245 GVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKL 394 G+ +N D KT+PAS E +G+ L HF S ++I + L S L Sbjct: 418 GLARYNYDDRKTLPASVESSIGYAALDKHF--PSNLIIPEYLFIQSSTDL 465
>RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1120 Score = 30.0 bits (66), Expect = 5.2 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = +2 Query: 170 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN-----VRDWKTVPASCEGYVGHYMLGSHF 334 PL+ + ++G+G A +A DS + + N V K + EGY HY L ++ Sbjct: 591 PLLFPEKSIVGTGLEAKIAKDSGMTIISRTNGTVSYVSGTKIGIQNKEGYTIHYRLKKYY 650 Query: 335 RRDSKVVIDQ 364 R + I+Q Sbjct: 651 RSNQDTCINQ 660
>RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1081 Score = 29.3 bits (64), Expect = 8.9 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 170 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN 262 PLI RPL+G+G A +A DS ++ + N Sbjct: 552 PLIFPERPLVGTGLEAQIAKDSGIMAISRSN 582 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,493,878 Number of Sequences: 219361 Number of extensions: 1028889 Number of successful extensions: 3944 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3731 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3931 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)