ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart38d06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence Length = 186325 Score = 117 bits (59), Expect = 4e-23 Identities = 119/139 (85%) Strand = Plus / Plus Query: 114 gcgatgttcctggtggggatagtggcggagctgctggaggactacacgatgctggtggcg 173 |||||| ||||||||| |||||||||||||||| ||||| |||||| |||||||||| Sbjct: 53539 gcgatgatcctggtggccgtagtggcggagctgctcgaggagtacacggtgctggtggcc 53598 Query: 174 gaggtgctggagcagctgctcaacagcgcgccgttcccccgccggatgcgcacgcttatg 233 |||||||||||||||| ||||| |||||| ||||| ||||||||||| || ||| Sbjct: 53599 cgggtgctggagcagctgttcaacgacgcgcccttccctcgccggatgcggttcctcatg 53658 Query: 234 ctgcggagcctccccttcg 252 ||||||||||||||||||| Sbjct: 53659 ctgcggagcctccccttcg 53677
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 117 bits (59), Expect = 4e-23 Identities = 119/139 (85%) Strand = Plus / Plus Query: 114 gcgatgttcctggtggggatagtggcggagctgctggaggactacacgatgctggtggcg 173 |||||| ||||||||| |||||||||||||||| ||||| |||||| |||||||||| Sbjct: 29380523 gcgatgatcctggtggccgtagtggcggagctgctcgaggagtacacggtgctggtggcc 29380582 Query: 174 gaggtgctggagcagctgctcaacagcgcgccgttcccccgccggatgcgcacgcttatg 233 |||||||||||||||| ||||| |||||| ||||| ||||||||||| || ||| Sbjct: 29380583 cgggtgctggagcagctgttcaacgacgcgcccttccctcgccggatgcggttcctcatg 29380642 Query: 234 ctgcggagcctccccttcg 252 ||||||||||||||||||| Sbjct: 29380643 ctgcggagcctccccttcg 29380661 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 ccgcaccgcgaggcgaaggcgagc 101 |||||||||| ||||||||||||| Sbjct: 18403370 ccgcaccgcgcggcgaaggcgagc 18403393
>dbj|AK063676.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E01, full insert sequence Length = 665 Score = 117 bits (59), Expect = 4e-23 Identities = 119/139 (85%) Strand = Plus / Plus Query: 114 gcgatgttcctggtggggatagtggcggagctgctggaggactacacgatgctggtggcg 173 |||||| ||||||||| |||||||||||||||| ||||| |||||| |||||||||| Sbjct: 80 gcgatgatcctggtggccgtagtggcggagctgctcgaggagtacacggtgctggtggcc 139 Query: 174 gaggtgctggagcagctgctcaacagcgcgccgttcccccgccggatgcgcacgcttatg 233 |||||||||||||||| ||||| |||||| ||||| ||||||||||| || ||| Sbjct: 140 cgggtgctggagcagctgttcaacgacgcgcccttccctcgccggatgcggttcctcatg 199 Query: 234 ctgcggagcctccccttcg 252 ||||||||||||||||||| Sbjct: 200 ctgcggagcctccccttcg 218
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 116 gatgttcctggtggggatagtggcggagctgctggaggactacacg 161 |||| ||||||||| ||| |||||||||||||||||||| |||||| Sbjct: 16695501 gatgatcctggtggcgatcgtggcggagctgctggaggagtacacg 16695546
>dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1115_C05 Length = 146585 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 116 gatgttcctggtggggatagtggcggagctgctggaggactacacg 161 |||| ||||||||| ||| |||||||||||||||||||| |||||| Sbjct: 35413 gatgatcctggtggcgatcgtggcggagctgctggaggagtacacg 35458
>dbj|AK100843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123G06, full insert sequence Length = 700 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 116 gatgttcctggtggggatagtggcggagctgctggaggactacacg 161 |||| ||||||||| ||| |||||||||||||||||||| |||||| Sbjct: 141 gatgatcctggtggcgatcgtggcggagctgctggaggagtacacg 186
>dbj|AK071662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106O11, full insert sequence Length = 715 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 116 gatgttcctggtggggatagtggcggagctgctggaggactacacg 161 |||| ||||||||| ||| |||||||||||||||||||| |||||| Sbjct: 140 gatgatcctggtggcgatcgtggcggagctgctggaggagtacacg 185
>dbj|AP006632.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16I03, TM0056, complete sequence Length = 102883 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 gctggagcagctgctcaacagc 200 |||||||||||||||||||||| Sbjct: 95911 gctggagcagctgctcaacagc 95932
>ref|NM_188306.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 528 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 caagtcaacaccacatccaca 23 ||||||||||||||||||||| Sbjct: 53 caagtcaacaccacatccaca 73
>gb|AC151955.2| Populus trichocarpa clone Pop1-041G20, complete sequence Length = 129953 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 123 ctggtggggatagtggcggagctgctggaggactaca 159 ||||||| ||||||||||||||| ||||||| |||| Sbjct: 21078 ctggtggcaatagtggcggagctgatggaggagtaca 21114
>gb|AC149298.1| Populus trichocarpa clone Pop1-021H24, complete sequence Length = 146635 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 123 ctggtggggatagtggcggagctgctggaggactaca 159 ||||||| ||||||||||||||| ||||||| |||| Sbjct: 13910 ctggtggcaatagtggcggagctgatggaggagtaca 13874
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 caagtcaacaccacatccaca 23 ||||||||||||||||||||| Sbjct: 5599524 caagtcaacaccacatccaca 5599544
>dbj|AP003105.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489A05 Length = 158815 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 caagtcaacaccacatccaca 23 ||||||||||||||||||||| Sbjct: 64997 caagtcaacaccacatccaca 65017
>dbj|AK110382.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-D03, full insert sequence Length = 3039 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 cagccgcccgcctctgctcag 341 ||||||||||||||||||||| Sbjct: 2822 cagccgcccgcctctgctcag 2842
>gb|BC040723.2| Homo sapiens hypothetical protein FLJ36748, mRNA (cDNA clone IMAGE:6065491), complete cds Length = 1314 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 aggtgctggagcagctgctc 194 |||||||||||||||||||| Sbjct: 112 aggtgctggagcagctgctc 131
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tggcggagctgctggaggac 155 |||||||||||||||||||| Sbjct: 1373666 tggcggagctgctggaggac 1373685
>ref|XM_512238.1| PREDICTED: Pan troglodytes similar to adenomatosis polyposis coli 2; adenomatous polyposis coli like (LOC455551), mRNA Length = 4370 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggaggtgctggagcagctg 191 |||||||||||||||||||| Sbjct: 1808 cggaggtgctggagcagctg 1827
>ref|XM_472197.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1224 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 ccgcaccgcgaggcgaaggcgagc 101 |||||||||| ||||||||||||| Sbjct: 1130 ccgcaccgcgcggcgaaggcgagc 1107
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 gaggtgctggagcagctgctcaac 197 |||||| ||||||||||||||||| Sbjct: 1714667 gaggtgatggagcagctgctcaac 1714644
>ref|XM_423371.1| PREDICTED: Gallus gallus similar to adenomatosis polyposis coli 2 (LOC425636), partial mRNA Length = 347 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggaggtgctggagcagctg 191 |||||||||||||||||||| Sbjct: 276 cggaggtgctggagcagctg 295
>ref|XM_423292.1| PREDICTED: Gallus gallus similar to lymphoid-restricted membrane protein (LOC425540), partial mRNA Length = 426 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ggaggtgctggagcagctgc 192 |||||||||||||||||||| Sbjct: 177 ggaggtgctggagcagctgc 196
>ref|XM_421464.1| PREDICTED: Gallus gallus similar to cyclin-dependent kinase-like 1 (CDC2-related kinase) (LOC423575), mRNA Length = 1922 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ggtgctggagcagctgctca 195 |||||||||||||||||||| Sbjct: 853 ggtgctggagcagctgctca 834
>gb|AC090443.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-434H17, complete sequence Length = 161421 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 371 cattttgcctcttttttccgtcca 394 |||||| ||||||||||||||||| Sbjct: 147496 cattttacctcttttttccgtcca 147519
>ref|NM_005883.2| Homo sapiens adenomatosis polyposis coli 2 (APC2), mRNA Length = 10151 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggaggtgctggagcagctg 191 |||||||||||||||||||| Sbjct: 417 cggaggtgctggagcagctg 436
>gb|BC032573.1| Homo sapiens adenomatosis polyposis coli 2, mRNA (cDNA clone IMAGE:5247221), containing frame-shift errors Length = 2316 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggaggtgctggagcagctg 191 |||||||||||||||||||| Sbjct: 417 cggaggtgctggagcagctg 436
>gb|BC020381.1| Homo sapiens adenomatosis polyposis coli 2, mRNA (cDNA clone IMAGE:4154147) Length = 2897 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggaggtgctggagcagctg 191 |||||||||||||||||||| Sbjct: 271 cggaggtgctggagcagctg 290
>emb|BX294140.1| Pirellula sp. strain 1 complete genome; segment 8/24 Length = 307050 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 cgtttggtgtgcagaccgac 425 |||||||||||||||||||| Sbjct: 218806 cgtttggtgtgcagaccgac 218787
>emb|AJ012652.1|HSA012652 Homo sapiens mRNA for APC2 protein, partial Length = 2403 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggaggtgctggagcagctg 191 |||||||||||||||||||| Sbjct: 413 cggaggtgctggagcagctg 432
>emb|CR856017.2| Human DNA sequence from clone WI2-85805H8 on chromosome X, complete sequence Length = 39781 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ggcggaggtgctggagcagc 189 |||||||||||||||||||| Sbjct: 32403 ggcggaggtgctggagcagc 32422
>gb|AC027307.5| Homo sapiens chromosome 19 clone CTB-25B13, complete sequence Length = 153570 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggaggtgctggagcagctg 191 |||||||||||||||||||| Sbjct: 43137 cggaggtgctggagcagctg 43156
>dbj|AK095980.1| Homo sapiens cDNA FLJ38661 fis, clone HLUNG2001633, weakly similar to Homo sapiens actin filament associated protein (AFAP) mRNA Length = 1958 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 aggtgctggagcagctgctc 194 |||||||||||||||||||| Sbjct: 99 aggtgctggagcagctgctc 118
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 taccgcaccgcgaggcgaag 95 |||||||||||||||||||| Sbjct: 4127393 taccgcaccgcgaggcgaag 4127412
>ref|NM_152406.1| Homo sapiens hypothetical protein FLJ36748 (FLJ36748), mRNA Length = 4153 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 aggtgctggagcagctgctc 194 |||||||||||||||||||| Sbjct: 88 aggtgctggagcagctgctc 107
>gb|AC097445.1| Drosophila melanogaster, chromosome 2R, region 43A-43B, BAC clone BACR12F04, complete sequence Length = 197994 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 tcaacaccacatccacatccaaag 30 ||||| |||||||||||||||||| Sbjct: 58256 tcaactccacatccacatccaaag 58233
>emb|CR407085.1| Gallus gallus finished cDNA, clone ChEST738b11 Length = 836 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ggaggtgctggagcagctgc 192 |||||||||||||||||||| Sbjct: 254 ggaggtgctggagcagctgc 273
>gb|AC074270.25|AC074270 Homo sapiens 12 BAC RP11-84G21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 140597 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 tcaacaccacatccacatcc 26 |||||||||||||||||||| Sbjct: 15993 tcaacaccacatccacatcc 16012
>dbj|AB022529.2| Homo sapiens APCL gene, complete cds Length = 17008 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggaggtgctggagcagctg 191 |||||||||||||||||||| Sbjct: 990 cggaggtgctggagcagctg 1009
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 324 ccgcccgcctctgctcagcctcgt 347 |||||||||||||||| ||||||| Sbjct: 129079 ccgcccgcctctgctccgcctcgt 129056
>gb|AC084123.9| Homo sapiens chromosome 8, clone CTD-2267H22, complete sequence Length = 120725 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 ctggtggcggaggtgctggagcag 188 ||||||||||||||||||| |||| Sbjct: 64161 ctggtggcggaggtgctggcgcag 64184
>gb|AC103705.5| Homo sapiens chromosome 8, clone RP11-55J15, complete sequence Length = 194189 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 ctggtggcggaggtgctggagcag 188 ||||||||||||||||||| |||| Sbjct: 2161 ctggtggcggaggtgctggcgcag 2184
>gb|AF128222.1|AF128222 Homo sapiens adenomatous polyposis coli homolog APC2 (APC2) mRNA, partial cds Length = 2403 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggaggtgctggagcagctg 191 |||||||||||||||||||| Sbjct: 413 cggaggtgctggagcagctg 432
>gb|AF110335.1|HSAPC2P1 Homo sapiens APC2 protein (APC2) gene, exons 1, 2, and 3 and partial cds Length = 360 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggaggtgctggagcagctg 191 |||||||||||||||||||| Sbjct: 216 cggaggtgctggagcagctg 235
>gb|AF110334.1|AF110334 Homo sapiens APC2 protein (APC2) mRNA, alternatively spliced, partial cds Length = 3800 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggaggtgctggagcagctg 191 |||||||||||||||||||| Sbjct: 272 cggaggtgctggagcagctg 291
>gb|AE003842.4| Drosophila melanogaster chromosome 2R, section 8 of 73 of the complete sequence Length = 231065 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 tcaacaccacatccacatccaaag 30 ||||| |||||||||||||||||| Sbjct: 171820 tcaactccacatccacatccaaag 171843
>gb|AC005198.1|AC005198 Drosophila melanogaster DNA sequence (P1 DS08462 (D163)), complete sequence Length = 81909 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 tcaacaccacatccacatccaaag 30 ||||| |||||||||||||||||| Sbjct: 49116 tcaactccacatccacatccaaag 49093
>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15, complete sequence Length = 133413 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 ccgcaccgcgaggcgaaggcgagc 101 |||||||||| ||||||||||||| Sbjct: 105293 ccgcaccgcgcggcgaaggcgagc 105316
>emb|AL078616.1|HST000001 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 179130 Length = 1359 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggaggtgctggagcagctg 191 |||||||||||||||||||| Sbjct: 278 cggaggtgctggagcagctg 297
>dbj|AB012162.1| Homo sapiens mRNA for APCL protein, complete cds Length = 11649 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggaggtgctggagcagctg 191 |||||||||||||||||||| Sbjct: 1922 cggaggtgctggagcagctg 1941
>dbj|AK074185.1| Homo sapiens mRNA for FLJ00258 protein Length = 4153 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 aggtgctggagcagctgctc 194 |||||||||||||||||||| Sbjct: 88 aggtgctggagcagctgctc 107 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,270,752 Number of Sequences: 3902068 Number of extensions: 3270752 Number of successful extensions: 73588 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73187 Number of HSP's gapped (non-prelim): 398 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
