Clone Name | bart38c08 |
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Clone Library Name | barley_pub |
>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor| Length = 254 Score = 137 bits (345), Expect = 2e-32 Identities = 73/153 (47%), Positives = 97/153 (63%), Gaps = 4/153 (2%) Frame = +2 Query: 122 SRGALSQRARAPIVE-TPAPAPAPRHVELAELLSLAGPYGKFLEYLTKTDVIKTFQSQAN 298 S A + AP++ TPAPAPAP +V L ELLS+AGP+ FL+YL T VI+TFQ+QAN Sbjct: 19 SASAKTASPPAPVLPPTPAPAPAPENVNLTELLSVAGPFHTFLDYLLSTGVIETFQNQAN 78 Query: 299 DTKQGITVFAPQDSAFAALNETVLSNLTADQLRSLMLHHAMPRYYQXXXXXXXXXXXPVS 478 +T++GIT+F P+D AF A LSNLT DQL+ L+L HA+P YY PVS Sbjct: 79 NTEEGITIFVPKDDAFKAQKNPPLSNLTKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVS 138 Query: 479 MFA---YKVNVTYAAGTIGVVSGWATAQLASSV 568 FA Y + T +GT+ + S W +++SSV Sbjct: 139 TFAGGQYSLKFTDVSGTVRIDSLWTRTKVSSSV 171
>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor| Length = 422 Score = 53.5 bits (127), Expect = 4e-07 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Frame = +2 Query: 179 APAPRHVELAELLSLAGPYG--KFLEYLTKTDVIKTFQSQANDTKQGITVFAPQDSAFAA 352 APAP ++ + L G F L + VIKTF+S ++G+TVFAP D AF A Sbjct: 180 APAPSSAGVSNITGLLEKAGCKTFANLLVSSGVIKTFESTV---EKGLTVFAPSDEAFKA 236 Query: 353 LNETVLSNLTADQLRSLMLHHAMPRY 430 L+NLT ++ SL+ +HA+ Y Sbjct: 237 RGVPDLTNLTQAEVVSLLEYHALAEY 262
>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor| (AtAGP8) Length = 420 Score = 50.8 bits (120), Expect = 3e-06 Identities = 36/93 (38%), Positives = 51/93 (54%) Frame = +2 Query: 152 APIVETPAPAPAPRHVELAELLSLAGPYGKFLEYLTKTDVIKTFQSQANDTKQGITVFAP 331 AP V T APAP+ + LL AG F L + V+KT++S ++G+TVFAP Sbjct: 174 APGVLT-APAPSASLSNITGLLEKAG-CKTFANLLVSSGVLKTYESAV---EKGLTVFAP 228 Query: 332 QDSAFAALNETVLSNLTADQLRSLMLHHAMPRY 430 D AF A L+ LT ++ SL+ +HA+ Y Sbjct: 229 SDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEY 261
>LBXCO_MOUSE (Q8BX46) Ladybird homeobox corepressor 1 (Transcriptional| corepressor Corl1) Length = 964 Score = 30.8 bits (68), Expect = 2.8 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%) Frame = -3 Query: 231 GPARESSSASSTWRGAGA--------GAGVSTIGARALWDSAPRESARQSNALTRAAALS 76 GP SS + T GAG GAG G W P +A+ + A+ AAA + Sbjct: 420 GPGTGSSGGAGTAAGAGGPGAGHLPPGAGPGPGGGTMFWGHQPSGAAKDAAAVAAAAAAA 479 Query: 75 SI 70 ++ Sbjct: 480 TV 481
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 30.0 bits (66), Expect = 4.8 Identities = 19/68 (27%), Positives = 29/68 (42%) Frame = +2 Query: 8 RSIRCNSLASPATHTTSSFAEMEXXXXXXXXXXXXXXXSRGALSQRARAPIVETPAPAPA 187 R R +S A+P T S + + G +++ E+P+PAP Sbjct: 395 RRHRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPK 454 Query: 188 PRHVELAE 211 PR VEL+E Sbjct: 455 PRKVELSE 462
>RS3_ACHAX (P41117) 30S ribosomal protein S3| Length = 257 Score = 29.3 bits (64), Expect = 8.2 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +1 Query: 241 VPGVPHQDRRDQDVSEPGQRHQAGHHRVRASRLGVRRPQRDRAVQ 375 +PG H++ R + S H G + R SR G RR Q D A + Sbjct: 212 LPGQSHEELRKERQSSASSNHGGG--KRRPSRKGPRRSQEDAATE 254
>LBXCO_RAT (P84551) Ladybird homeobox corepressor 1| Length = 964 Score = 29.3 bits (64), Expect = 8.2 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 8/62 (12%) Frame = -3 Query: 231 GPARESSSASSTWRGAGA--------GAGVSTIGARALWDSAPRESARQSNALTRAAALS 76 GP S + T GAG GAG G W P +A+ + A+ AAA + Sbjct: 420 GPGTGSGGGAGTAAGAGGPGAGHLPPGAGPGPGGGTMFWGHQPSGAAKDAAAVAAAAAAA 479 Query: 75 SI 70 ++ Sbjct: 480 TV 481 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,933,104 Number of Sequences: 219361 Number of extensions: 967854 Number of successful extensions: 5360 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 4554 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5298 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)