>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor|
          Length = 254

 Score =  137 bits (345), Expect = 2e-32
 Identities = 73/153 (47%), Positives = 97/153 (63%), Gaps = 4/153 (2%)
 Frame = +2

Query: 122 SRGALSQRARAPIVE-TPAPAPAPRHVELAELLSLAGPYGKFLEYLTKTDVIKTFQSQAN 298
           S  A +    AP++  TPAPAPAP +V L ELLS+AGP+  FL+YL  T VI+TFQ+QAN
Sbjct: 19  SASAKTASPPAPVLPPTPAPAPAPENVNLTELLSVAGPFHTFLDYLLSTGVIETFQNQAN 78

Query: 299 DTKQGITVFAPQDSAFAALNETVLSNLTADQLRSLMLHHAMPRYYQXXXXXXXXXXXPVS 478
           +T++GIT+F P+D AF A     LSNLT DQL+ L+L HA+P YY            PVS
Sbjct: 79  NTEEGITIFVPKDDAFKAQKNPPLSNLTKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVS 138

Query: 479 MFA---YKVNVTYAAGTIGVVSGWATAQLASSV 568
            FA   Y +  T  +GT+ + S W   +++SSV
Sbjct: 139 TFAGGQYSLKFTDVSGTVRIDSLWTRTKVSSSV 171

>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor|
          Length = 422

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
 Frame = +2

Query: 179 APAPRHVELAELLSLAGPYG--KFLEYLTKTDVIKTFQSQANDTKQGITVFAPQDSAFAA 352
           APAP    ++ +  L    G   F   L  + VIKTF+S     ++G+TVFAP D AF A
Sbjct: 180 APAPSSAGVSNITGLLEKAGCKTFANLLVSSGVIKTFESTV---EKGLTVFAPSDEAFKA 236

Query: 353 LNETVLSNLTADQLRSLMLHHAMPRY 430
                L+NLT  ++ SL+ +HA+  Y
Sbjct: 237 RGVPDLTNLTQAEVVSLLEYHALAEY 262

>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor|
           (AtAGP8)
          Length = 420

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 36/93 (38%), Positives = 51/93 (54%)
 Frame = +2

Query: 152 APIVETPAPAPAPRHVELAELLSLAGPYGKFLEYLTKTDVIKTFQSQANDTKQGITVFAP 331
           AP V T APAP+     +  LL  AG    F   L  + V+KT++S     ++G+TVFAP
Sbjct: 174 APGVLT-APAPSASLSNITGLLEKAG-CKTFANLLVSSGVLKTYESAV---EKGLTVFAP 228

Query: 332 QDSAFAALNETVLSNLTADQLRSLMLHHAMPRY 430
            D AF A     L+ LT  ++ SL+ +HA+  Y
Sbjct: 229 SDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEY 261

>LBXCO_MOUSE (Q8BX46) Ladybird homeobox corepressor 1 (Transcriptional|
           corepressor Corl1)
          Length = 964

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
 Frame = -3

Query: 231 GPARESSSASSTWRGAGA--------GAGVSTIGARALWDSAPRESARQSNALTRAAALS 76
           GP   SS  + T  GAG         GAG    G    W   P  +A+ + A+  AAA +
Sbjct: 420 GPGTGSSGGAGTAAGAGGPGAGHLPPGAGPGPGGGTMFWGHQPSGAAKDAAAVAAAAAAA 479

Query: 75  SI 70
           ++
Sbjct: 480 TV 481

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +2

Query: 8   RSIRCNSLASPATHTTSSFAEMEXXXXXXXXXXXXXXXSRGALSQRARAPIVETPAPAPA 187
           R  R +S A+P   T  S    +               + G +++       E+P+PAP 
Sbjct: 395 RRHRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPK 454

Query: 188 PRHVELAE 211
           PR VEL+E
Sbjct: 455 PRKVELSE 462

>RS3_ACHAX (P41117) 30S ribosomal protein S3|
          Length = 257

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 241 VPGVPHQDRRDQDVSEPGQRHQAGHHRVRASRLGVRRPQRDRAVQ 375
           +PG  H++ R +  S     H  G  + R SR G RR Q D A +
Sbjct: 212 LPGQSHEELRKERQSSASSNHGGG--KRRPSRKGPRRSQEDAATE 254

>LBXCO_RAT (P84551) Ladybird homeobox corepressor 1|
          Length = 964

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
 Frame = -3

Query: 231 GPARESSSASSTWRGAGA--------GAGVSTIGARALWDSAPRESARQSNALTRAAALS 76
           GP   S   + T  GAG         GAG    G    W   P  +A+ + A+  AAA +
Sbjct: 420 GPGTGSGGGAGTAAGAGGPGAGHLPPGAGPGPGGGTMFWGHQPSGAAKDAAAVAAAAAAA 479

Query: 75  SI 70
           ++
Sbjct: 480 TV 481


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,933,104
Number of Sequences: 219361
Number of extensions: 967854
Number of successful extensions: 5360
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5298
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)