ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart38c06 |
|---|---|
| Clone Library Name | barley_pub |
>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Plakophilin-related armadillo repeat protein-interacting PDZ protein) Length = 2766 Score = 32.7 bits (73), Expect = 0.84 Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 15/142 (10%) Frame = +2 Query: 167 TRERKLNPDLQEQLAKPYLARAMAAVDPSH--------PEGSKGRDTKGMSVLQQHAAFS 322 +RE +P L L P LA+ + + S +GS S + H Sbjct: 786 SREANSSPGLGTPLKSPSLAKKDSLLSESELSQYFVHDGQGSLSDFVVAGSEDEDHPGSG 845 Query: 323 -DRNGDGVIYPWETFQSLRAIGLGSPSAFGTSILLHLVLTY------PTQPGWMPSPLLS 481 + + DG + P + RA L + + TS LLH +T P P + +PLL Sbjct: 846 YETSEDGSLLPVPSAHKARANSLVTLGSQRTSGLLHKQVTVARQASLPGSPQVLRNPLLR 905 Query: 482 VHIKNIHRGKHGSDSETYDTEG 547 + GSD E +D EG Sbjct: 906 QRRVRCYDSNGGSDDEDFDGEG 927
>PATR_CORJK (Q4JSJ5) Putative phenylalanine aminotransferase (EC 2.6.1.-)| Length = 373 Score = 32.7 bits (73), Expect = 0.84 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 7/122 (5%) Frame = +2 Query: 65 FLPRSCRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKPYLARAMAAV 244 ++P S +PG+ ++ A+ SS P + A T PD+ + LA+ + V Sbjct: 12 YVPGSTQPGALKL-ASNESSLSPLPSVSAVINDATSNLNRYPDMASGALRGKLAQWLG-V 69 Query: 245 DPSHPEGSKGRDTKGMSVLQQHAAFSDRNGDGVIYPWETFQS-------LRAIGLGSPSA 403 D + G ++ QQ + ++GD V+Y W +F++ A+G+G P Sbjct: 70 DLDNVAVGNGSS----ALCQQLVQATCKDGDEVVYAWRSFEAYPILCKIAGAVGVGVPLK 125 Query: 404 FG 409 G Sbjct: 126 SG 127
>NORK_MEDTR (Q8L4H4) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does| not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) Length = 925 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Frame = +2 Query: 395 PSAFGTSILLHLVLTYPTQPGWMPSPLLSV-HIKNIHRGKHGSDSETYDTE 544 PS +S+L+ L L+Y GW+P ++S+ H+K+++ G + S S+ T+ Sbjct: 448 PSFPPSSLLISLDLSYNDLSGWLPESIISLPHLKSLYFGCNPSMSDEDTTK 498
>GLGB2_STRCO (Q59832) 1,4-alpha-glucan branching enzyme 2 (EC 2.4.1.18)| (Glycogen branching enzyme 2) (BE 2) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 2) Length = 741 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 10/51 (19%) Frame = +1 Query: 394 PFSLRNIHTPPPRPHLSYSTGVDAFPS----------AFSPYKEHPQGQAW 516 PFS+ +H P RP L+Y + P+ P EHP G +W Sbjct: 264 PFSVYEVHLPSWRPGLTYRELAEELPAYVKDLGFTHVELMPVAEHPYGPSW 314
>ZPI_PONPY (Q5RDA8) Protein Z-dependent protease inhibitor precursor| (PZ-dependent protease inhibitor) (PZI) (Serpin A10) Length = 443 Score = 32.0 bits (71), Expect = 1.4 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Frame = +2 Query: 143 TEAPQAAVTR----ERKLNPDLQEQLAKPYLARAMAAVDPSHPEGSKGRDTKGMSVLQQH 310 T APQ +R R+ D QE + A + S + +K G S+L++ Sbjct: 31 TPAPQNQTSRVVQAPREEEEDEQEASEEKAGDEEKAWLTASRQQLAKETSNFGFSLLRKI 90 Query: 311 AAFSDRNGDGVIYPWETFQSLRAIGLGSPSAFGTSIL--LHLVLTYPTQPGWMPS 469 + D G+ V P+ T ++ + LG+ T I LHL PT+PG +PS Sbjct: 91 SMRHD--GNIVFSPFGTSLAMTGLMLGATGLTETQIKRGLHLQALNPTKPGLLPS 143
>POLR_ELV (P35928) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1748 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Frame = +2 Query: 32 RLPTLRSRHLGFLPRSC-RPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQL 208 R P L H FLP SC +P +S AA P+ P V + L Q Q Sbjct: 549 RRPLLLDSHSSFLPSSCLQPPASPSIAAAPHPLPPAQKPPRPPTTVPTPKPLASPSQTQA 608 Query: 209 AKP 217 A+P Sbjct: 609 AQP 611
>GLGB1_STRAW (Q82JF0) 1,4-alpha-glucan branching enzyme 1 (EC 2.4.1.18)| (Glycogen branching enzyme 1) (BE 1) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1) Length = 838 Score = 31.2 bits (69), Expect = 2.4 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 21/68 (30%) Frame = +1 Query: 376 SDRAWV-----------PFSLRNIHTPPPRPHLSYSTGVDAFPSAFS----------PYK 492 +D AW+ PFS+ +H P RP L+Y + P+ + P Sbjct: 339 ADEAWMAARGERPVHESPFSVYEVHLPSWRPGLTYRQLAEQLPAYVADLGFTHVELLPVA 398 Query: 493 EHPQGQAW 516 EHP G +W Sbjct: 399 EHPFGGSW 406
>GLGB2_STRAW (Q825Q8) 1,4-alpha-glucan branching enzyme 2 (EC 2.4.1.18)| (Glycogen branching enzyme 2) (BE 2) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 2) Length = 592 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 10/51 (19%) Frame = +1 Query: 394 PFSLRNIHTPPPRPHLSYSTGVDAFPSAFS----------PYKEHPQGQAW 516 PFS+ +H P RP L+Y + P+ + P EHP G +W Sbjct: 117 PFSVYEVHLPSWRPGLTYRQLAEQLPAYVADLGFTHVELLPVAEHPFGGSW 167
>DNL1_XENLA (P51892) DNA ligase 1 (EC 6.5.1.1) (DNA ligase I)| (Polydeoxyribonucleotide synthase [ATP] 1) Length = 1070 Score = 30.8 bits (68), Expect = 3.2 Identities = 22/76 (28%), Positives = 36/76 (47%) Frame = +2 Query: 101 VTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKPYLARAMAAVDPSHPEGSKGRD 280 V +S++ DP++ + V+ E++ P QEQ +P L P+ SKG+ Sbjct: 258 VQETISNADDPNIELVDQKDVVSGEKQSEPKCQEQ-PQPKLTSPTV-----EPKASKGKA 311 Query: 281 TKGMSVLQQHAAFSDR 328 K S L + FSD+ Sbjct: 312 RKKNSPLPKKVKFSDK 327
>HEM3_MYCTU (P64336) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 309 Score = 30.8 bits (68), Expect = 3.2 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = +2 Query: 62 GFLPRSCRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKPY--LARAM 235 G L CR G SR+ A ++ D +AAVT ER L DL+ + P +A + Sbjct: 191 GALAVECRAGDSRLVAVLAELDDADT-----RAAVTAERALLADLEAGCSAPVGAIAEVV 245 Query: 236 AAVD 247 ++D Sbjct: 246 ESID 249
>HEM3_MYCBO (P64337) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 309 Score = 30.8 bits (68), Expect = 3.2 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = +2 Query: 62 GFLPRSCRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKPY--LARAM 235 G L CR G SR+ A ++ D +AAVT ER L DL+ + P +A + Sbjct: 191 GALAVECRAGDSRLVAVLAELDDADT-----RAAVTAERALLADLEAGCSAPVGAIAEVV 245 Query: 236 AAVD 247 ++D Sbjct: 246 ESID 249
>AROQ1_AGRT5 (Q8UFR5) 3-dehydroquinate dehydratase 1 (EC 4.2.1.10)| (3-dehydroquinase 1) (Type II DHQase 1) Length = 145 Score = 30.8 bits (68), Expect = 3.2 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +2 Query: 317 FSDRNGDGVIYPWETFQSLRAIGLG-SPSAFG-TSILLHLVLTYPTQPGWMPSPLLSVHI 490 F N +GV+ W RA G+ +P A+ TSI LH + + +P++ VHI Sbjct: 49 FRQSNHEGVLVDWLHEAGERAAGVVINPGAYSHTSIALHDAIRA------ISTPVVEVHI 102 Query: 491 KNIH 502 NIH Sbjct: 103 SNIH 106
>IAA4_ORYSA (Q59AF4) Auxin-responsive protein IAA4 (Indoleacetic acid-induced| protein 4) Length = 203 Score = 30.4 bits (67), Expect = 4.2 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%) Frame = +2 Query: 80 CRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKP--------YLARAM 235 C+ G +++M SST P+L+T + +A T R L+ DL+ L+ A A Sbjct: 4 CKGGGMSPSSSMDSSTHPALSTTS--SAATARRDLSTDLRLGLSLSTSSSSSLLQAAAAA 61 Query: 236 AAVDPSHP 259 AA D S P Sbjct: 62 AAADDSIP 69
>MAGD1_MOUSE (Q9QYH6) Melanoma-associated antigen D1 (MAGE-D1 antigen)| (Neurotrophin receptor-interacting MAGE homolog) (Dlxin-1) Length = 775 Score = 30.0 bits (66), Expect = 5.4 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Frame = +2 Query: 86 PGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKPYLA-RAMAAVDPSHPE 262 P +S+ TAA S +++ P T K + ++ A+P +A A + Sbjct: 40 PPTSQATAAASGPNASPQSSQPP----TANEKADTEVSAAAARPKTGFKAQNATTKGPND 95 Query: 263 GSKGRDTKGMSVLQQHAAFSDRNG 334 S+ R+ K M Q AAF +NG Sbjct: 96 YSQARNAKEMPKNQSKAAFKSQNG 119
>ALS2_PANTR (Q5BIW4) Alsin (Amyotrophic lateral sclerosis protein 2 homolog)| Length = 1657 Score = 30.0 bits (66), Expect = 5.4 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -2 Query: 569 RILLVQTSLQCHTSQNRSHACPCGCSLYGLKAEGKAST 456 ++L+ T + H + SH CP G +L +AE AST Sbjct: 237 QLLITMTDKEDHVIISDSHCCPLGVTLTESQAENHAST 274
>ALS2_HUMAN (Q96Q42) Alsin (Amyotrophic lateral sclerosis protein 2)| Length = 1657 Score = 30.0 bits (66), Expect = 5.4 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -2 Query: 569 RILLVQTSLQCHTSQNRSHACPCGCSLYGLKAEGKAST 456 ++L+ T + H + SH CP G +L +AE AST Sbjct: 237 QLLITMTDKEDHVIISDSHCCPLGVTLTESQAENHAST 274
>AFF2_PONPY (Q7YQM1) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) Length = 1272 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = +2 Query: 425 HLVLTYPTQPGWMPSPLLSVHIKNIHRGKHGSDSETYDTEGRFEPAK-----FDAIFSKF 589 HL +T W PLLS N+ R K D ++ + + AK DA+F KF Sbjct: 1000 HLEMT-----SWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKADALFEKF 1054 Query: 590 GR 595 G+ Sbjct: 1055 GK 1056
>AFF2_PANTR (Q7YQM2) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) Length = 1272 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = +2 Query: 425 HLVLTYPTQPGWMPSPLLSVHIKNIHRGKHGSDSETYDTEGRFEPAK-----FDAIFSKF 589 HL +T W PLLS N+ R K D ++ + + AK DA+F KF Sbjct: 1000 HLEMT-----SWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKADALFEKF 1054 Query: 590 GR 595 G+ Sbjct: 1055 GK 1056
>AFF2_MOUSE (O55112) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) (FMR2P) (Ox19 protein) Length = 1272 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = +2 Query: 425 HLVLTYPTQPGWMPSPLLSVHIKNIHRGKHGSDSETYDTEGRFEPAK-----FDAIFSKF 589 HL +T W PLLS N+ R K D ++ + + AK DA+F KF Sbjct: 1000 HLEMT-----SWAALPLLSSSSANVRRPKLTFDDSVHNADFYMQEAKKLKHKADALFEKF 1054 Query: 590 GR 595 G+ Sbjct: 1055 GK 1056
>AFF2_HUMAN (P51816) AF4/FMR2 family member 2 (Fragile X mental retardation 2| protein) (Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile X E mental retardation syndrome protein) Length = 1311 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = +2 Query: 425 HLVLTYPTQPGWMPSPLLSVHIKNIHRGKHGSDSETYDTEGRFEPAK-----FDAIFSKF 589 HL +T W PLLS N+ R K D ++ + + AK DA+F KF Sbjct: 1039 HLEMT-----SWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKADALFEKF 1093 Query: 590 GR 595 G+ Sbjct: 1094 GK 1095
>RBPMS_XENLA (Q9YGP5) RNA-binding protein with multiple splicing homolog| (RBP-MS) (HEart, RRM Expressed Sequence) (Hermes) Length = 196 Score = 30.0 bits (66), Expect = 5.4 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = +1 Query: 370 PASDRAWVPFSLRNIHTPPPRPHLSYSTGVDAFPSAFSPYKEHPQGQAWER 522 PAS AW P+ L P PH +++ A + + + +P +A ++ Sbjct: 138 PASPEAWAPYPLYTAELAPAIPHAAFTYPAAAAAALHAQMRWYPPSEATQQ 188
>LATS2_MOUSE (Q7TSJ6) Serine/threonine-protein kinase LATS2 (EC 2.7.11.1) (Large| tumor suppressor homolog 2) (Serine/threonine-protein kinase kpm) (Kinase phosphorylated during mitosis protein) Length = 1042 Score = 29.6 bits (65), Expect = 7.1 Identities = 19/59 (32%), Positives = 26/59 (44%) Frame = +2 Query: 83 RPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKPYLARAMAAVDPSHP 259 R G SR + + +PSL AVT L+P ++ +P AV PSHP Sbjct: 378 RAGPSRTNSFNNPQPEPSLPAPNTVTAVTAAHILHPVKSVRVLRP---EPQTAVGPSHP 433
>RECF_SYNJB (Q2JIB8) DNA replication and repair protein recF| Length = 380 Score = 29.3 bits (64), Expect = 9.3 Identities = 13/52 (25%), Positives = 23/52 (44%) Frame = +1 Query: 1 SAARTTTSYREAPHPALPSPRLSPKILQTRLVSSNRRHVVVDRSVAGDRGAP 156 S R T + P LP P+ SP+++Q + ++ R + S+ P Sbjct: 216 SGGRETLTLTYRPQVPLPDPQASPEVIQAQFLAEIRAKAAAEHSLGSSLVGP 267
>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) (CW17) Length = 653 Score = 29.3 bits (64), Expect = 9.3 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Frame = +2 Query: 248 PSHPEGSKGRDTKGMSVLQQHAAFSDRNGDGVIYPWETFQSLRAIGLGSPSAFGTSILLH 427 P P S + + Q + G G I PW+ Q+ A G+P G ++ Sbjct: 509 PPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQAAAAASPGTPQMQGNPTMVP 568 Query: 428 LV--LTYPTQPGWMPSPLLSV 484 L + P PG P P S+ Sbjct: 569 LPPGVQPPLPPGAPPPPTCSI 589
>GLMS_RALSO (Q8Y303) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 611 Score = 29.3 bits (64), Expect = 9.3 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 335 DGVIYPWETF-QSLRAIGLGSPSAFGTSILLHLVLTYPTQPGWMPSPLLSVHIKNIHRGK 511 +G+I +ET + L+A+G G S T ++ HL+ T P L ++ + + Sbjct: 98 NGIIENYETLREELKAVGYGFESQTDTEVVAHLIHQAYTYPSSATRGHLFASVRAVVKRL 157 Query: 512 HGS 520 HG+ Sbjct: 158 HGA 160
>Y2829_VIBVU (Q8D8Y6) Putative reductase VV1_2829 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 9.3 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = -1 Query: 540 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 451 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>Y2423_PHOPR (Q6LPG9) Putative reductase PBPRA2423 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 9.3 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = -1 Query: 540 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 451 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>Y1437_VIBVY (Q7MLJ0) Putative reductase VV1437 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 9.3 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = -1 Query: 540 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 451 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>Y1231_VIBPA (Q87QB9) Putative reductase VP1231 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 9.3 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = -1 Query: 540 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 451 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>K1849_MOUSE (Q69Z89) Protein KIAA1849| Length = 1099 Score = 29.3 bits (64), Expect = 9.3 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Frame = +2 Query: 5 LLVPPPAIAR-LPTLRSRHLGFLPRSCRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERK 181 LL P A+ LP LG P+SCR A + + PSL AAV R R Sbjct: 382 LLFKDPGQAQPLPACALARLGAAPQSCR----MCGAVLRARGAPSLP-----AAVVRRRS 432 Query: 182 LNPDLQEQLAKPYLARAMAAVDP 250 L + + + L R M ++P Sbjct: 433 LLLEFEPDVEDTLLQRIMTLIEP 455
>GPC5_MOUSE (Q8CAL5) Glypican-5 precursor| Length = 572 Score = 29.3 bits (64), Expect = 9.3 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +2 Query: 458 WMPSPLLSVHIKNIHRGKHGSDSETYDT 541 WMP + +K +HR HGS +T T Sbjct: 521 WMPDSMNFSDVKQVHRADHGSTLDTTST 548
>ZPI_HUMAN (Q9UK55) Protein Z-dependent protease inhibitor precursor| (PZ-dependent protease inhibitor) (PZI) (Serpin A10) Length = 444 Score = 29.3 bits (64), Expect = 9.3 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%) Frame = +2 Query: 143 TEAPQAAVTR----ERKLNPDLQEQLAKPYLARAMAAVDPSHPEGSKGRDTKGMSVLQQH 310 T APQ +R ++ D QE + A + S + +K G S+L++ Sbjct: 31 TPAPQNQTSRVVQAPKEEEEDEQEASEEKASEEEKAWLMASRQQLAKETSNFGFSLLRKI 90 Query: 311 AAFSDRNGDGVIYPWETFQSLRAIGLGSPSAFGTSIL--LHLVLTYPTQPGWMPS 469 + D G+ V P+ ++ + LG+ T I LHL PT+PG +PS Sbjct: 91 SMRHD--GNMVFSPFGMSLAMTGLMLGATGPTETQIKRGLHLQALKPTKPGLLPS 143
>PARD3_HUMAN (Q8TEW0) Partitioning-defective 3 homolog (PARD-3) (PAR-3) (Atypical| PKC isotype-specific-interacting protein) (ASIP) (CTCL tumor antigen se2-5) (PAR3-alpha) Length = 1356 Score = 29.3 bits (64), Expect = 9.3 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Frame = +2 Query: 83 RPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKPYLARAM-------AA 241 + GS S S + E+ Q AV E LN D+ +P + R AA Sbjct: 870 KAGSPSRDVGPSLGLKKSSSLESLQTAVA-EVTLNGDIPFHRPRPRIIRGRGCNESFRAA 928 Query: 242 VDPSHPEGSKGRDTKGMSVLQQHAAFSDRNG 334 +D S+ + + D +GM L++ S R+G Sbjct: 929 IDKSYDKPAVDDDDEGMETLEEDTEESSRSG 959 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,687,601 Number of Sequences: 219361 Number of extensions: 1632939 Number of successful extensions: 6245 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 5893 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6239 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
