Clone Name	bart38c06
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|BT009058.1| Triticum aestivum clone wdr1f.pk003.b21:fis, full...	821	0.0
2	ref|NM_187692.1| Oryza sativa (japonica cultivar-group), predic...	186	6e-44
3	gb|AY104352.1| Zea mays PCO064372 mRNA sequence	117	4e-23
4	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	113	7e-22
5	gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome...	113	7e-22
6	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	113	7e-22
7	ref|XM_473140.1| Oryza sativa (japonica cultivar-group), predic...	60	9e-06
8	emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4,...	60	9e-06
9	dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...	60	9e-06
10	dbj|AK063625.1| Oryza sativa (japonica cultivar-group) cDNA clon...	60	9e-06
11	gb|AY370890.1| Hordeum vulgare caleosin 1 (Clo1) gene, complete cds	56	1e-04
12	gb|AY370889.1| Hordeum vulgare caleosin 1 (Clo1) mRNA, complete cds	56	1e-04
13	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	46	0.13
14	dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...	46	0.13
15	dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D...	46	0.13
16	dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic D...	46	0.13
17	dbj|AK104598.1| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.13
18	dbj|AK073727.1| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.13
19	dbj|AK060792.1| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.13
20	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	46	0.13
21	emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510...	46	0.13
22	gb|BT017540.1| Zea mays clone EL01N0422C08.c mRNA sequence	44	0.53
23	gb|AY370892.1| Hordeum vulgare caleosin 2 (Clo2) gene, complete cds	44	0.53
24	gb|AY370891.1| Hordeum vulgare caleosin 2 (Clo2) mRNA, complete cds	44	0.53
25	emb|CR385067.9| Zebrafish DNA sequence from clone CH211-79A21 in...	44	0.53
26	gb|AY043288.1| Hordeum vulgare calcium-binding protein 1 (CaBP1)...	44	0.53
27	gb|AY104745.1| Zea mays PCO069403 mRNA sequence	44	0.53
28	gb|CP000284.1| Methylobacillus flagellatus KT, complete genome	42	2.1
29	gb|CP000249.1| Frankia sp. CcI3, complete genome	42	2.1
30	gb|AC164981.2| Mus musculus BAC clone RP23-121F5 from chromosome...	40	8.2
31	ref|XM_528515.1| PREDICTED: Pan troglodytes similar to doublesex...	40	8.2
32	ref|NM_190058.1| Oryza sativa (japonica cultivar-group), predic...	40	8.2
33	ref|XM_418482.1| PREDICTED: Gallus gallus similar to DEAH (Asp-G...	40	8.2
34	ref|NM_021240.2| Homo sapiens doublesex and mab-3 related transc...	40	8.2
35	gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome	40	8.2
36	gb|AY165140.1| Certhilauda albofasciata 16S ribosomal RNA gene, ...	40	8.2
37	emb|AL136365.9| Human DNA sequence from clone RP11-143M15 on chr...	40	8.2
38	emb|AL049636.22|HSDJ792G4 Human DNA sequence from clone RP4-792G...	40	8.2
39	gb|AC144743.4| Oryza sativa (japonica cultivar-group) chromosome...	40	8.2
40	gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome	40	8.2
41	gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome	40	8.2
42	dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
43	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
44	dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
45	gb|AF193873.1|AF193873 Homo sapiens testis-specific protein mRNA...	40	8.2
46	gb|AF193872.1|AF193872 Homo sapiens putative DM domain protein g...	40	8.2
47	emb|AJ328770.1|HSA328770 Homo sapiens genomic sequence surroundi...	40	8.2
48	dbj|AK073548.1| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.2
49	emb|AJ301581.1|HSA301581 Homo sapiens partial mRNA for doublesex...	40	8.2
50	gb|AC154475.2| Mus musculus BAC clone RP24-130B12 from 17, compl...	40	8.2
51	gb|AC149216.5| Mus musculus BAC clone RP24-194H8 from 18, comple...	40	8.2

---

>gb|BT009058.1| Triticum aestivum clone wdr1f.pk003.b21:fis, full insert mRNA
           sequence
          Length = 1157

 Score =  821 bits (414), Expect = 0.0
 Identities = 501/530 (94%)
 Strand = Plus / Plus

                                                                       
Query: 74  agatcctgcagacccggctcgtctcgagtaaccgccgccatgtcgtcgtcgaccgatccg 133
           ||||||||||  | ||||||||| ||||||||||||     |||||||||| ||||||||
Sbjct: 132 agatcctgcaagctcggctcgtcgcgagtaaccgccatgtcgtcgtcgtcgtccgatccg 191

                                                                       
Query: 134 tcgctggcgaccgaggcgccccaggcggccgtcaccagagagcggaagctcaaccccgac 193
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||
Sbjct: 192 tcgctggcgaccgaggcgccccaggcggccgtcaccagcgagcgcaagctcaaccgcgac 251

                                                                       
Query: 194 ctgcaggagcagctcgccaagccatatctggctcgagcaatggcggcggttgacccgagc 253
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 252 ctgcaggagcagctcgccaagccatatctggccagagcaatggcggcggttgacccgagc 311

                                                                       
Query: 254 cacccggagggcagcaaggggagggacaccaagggcatgagcgtgctccagcagcacgcc 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cacccggagggcagcaaggggagggacaccaagggcatgagcgtgctccagcagcacgcc 371

                                                                       
Query: 314 gccttctccgaccgcaacggcgacggggtaatctacccatgggagaccttccaaagcctg 373
           ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 372 gccttcttcgaccgcaacggcgacggggtcatctacccatgggagaccttccagagcctg 431

                                                                       
Query: 374 cgagcgatcgggcttgggtccccttcagccttcggaacatccatactcctccacctcgtc 433
           ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cgagcaatcgggcttgggtcgccttcagccttcggaacatccatactcctccacctcgtc 491

                                                                       
Query: 434 ctcacttatcctactcaaccggggtggatgccttcccctctgctttcagtccatataaag 493
           ||||||||||||||||||||||| |||||||||||||||||||| ||  |||||||||||
Sbjct: 492 ctcacttatcctactcaaccgggatggatgccttcccctctgctgtcgatccatataaag 551

                                                                       
Query: 494 aacatccacaggggcaagcatgggagcgattctgagacgtatgacactgaagggaggttt 553
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 552 aacatccacaggggcaagcacgggagcgattctgagacgtatgacacagaagggaggttt 611

                                                             
Query: 554 gaaccagcaaaattcgatgctatattcagcaagtttggccgaactcggcc 603
           |||||||| ||||||||||||||||||||||||||||||  |||||||||
Sbjct: 612 gaaccagcgaaattcgatgctatattcagcaagtttggcaaaactcggcc 661

---

>ref|NM_187692.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 816

 Score =  186 bits (94), Expect = 6e-44
 Identities = 163/186 (87%)
 Strand = Plus / Plus

                                                                       
Query: 414 ccatactcctccacctcgtcctcacttatcctactcaaccggggtggatgccttcccctc 473
           |||||||| || ||||||||||||  ||||||||||||||||||||||||||||| ||||
Sbjct: 416 ccatactcatcaacctcgtcctcagctatcctactcaaccggggtggatgccttctcctc 475

                                                                       
Query: 474 tgctttcagtccatataaagaacatccacaggggcaagcatgggagcgattctgagacgt 533
           || ||||  |||||||||||||||| |||| ||| ||||||||||| || |||||  | |
Sbjct: 476 tgttttccatccatataaagaacattcacaagggtaagcatgggagtgactctgaagcat 535

                                                                       
Query: 534 atgacactgaagggaggtttgaaccagcaaaattcgatgctatattcagcaagtttggcc 593
           |||| ||||||||||||||||| ||| | ||||| ||||||||||||||||||| |||| 
Sbjct: 536 atgatactgaagggaggtttgatccatcgaaatttgatgctatattcagcaagtatggca 595

                 
Query: 594 gaactc 599
           ||||||
Sbjct: 596 gaactc 601



 Score =  161 bits (81), Expect = 3e-36
 Identities = 177/209 (84%)
 Strand = Plus / Plus

                                                                       
Query: 173 gagcggaagctcaaccccgacctgcaggagcagctcgccaagccatatctggctcgagca 232
           |||||||||||||||||| ||||||||||||||||  ||||||||||||| ||  | || 
Sbjct: 175 gagcggaagctcaaccccaacctgcaggagcagcttcccaagccatatctcgcgagggct 234

                                                                       
Query: 233 atggcggcggttgacccgagccacccggagggcagcaaggggagggacaccaagggcatg 292
            | |||||||| ||||||||||||||| |||| | |   ||| | ||| ||   ||||||
Sbjct: 235 ctcgcggcggtggacccgagccacccgcaggggacccgtgggcgcgacgcccgcggcatg 294

                                                                       
Query: 293 agcgtgctccagcagcacgccgccttctccgaccgcaacggcgacggggtaatctaccca 352
           ||||||||||||||||||||||| |||| ||||||||||||||||||  | |||||||| 
Sbjct: 295 agcgtgctccagcagcacgccgcgttcttcgaccgcaacggcgacggcatcatctacccc 354

                                        
Query: 353 tgggagaccttccaaagcctgcgagcgat 381
           ||||||||||||||| | ||| |||||||
Sbjct: 355 tgggagaccttccaagggctgagagcgat 383

---

>gb|AY104352.1| Zea mays PCO064372 mRNA sequence
          Length = 912

 Score =  117 bits (59), Expect = 4e-23
 Identities = 200/247 (80%)
 Strand = Plus / Plus

                                                                       
Query: 132 cgtcgctggcgaccgaggcgccccaggcggccgtcaccagagagcggaagctcaaccccg 191
           |||| |||| ||| ||||||||||||||  ||||||| || ||||| | |||||||||||
Sbjct: 271 cgtctctggagacggaggcgccccaggctaccgtcacgagggagcgcaggctcaaccccg 330

                                                                       
Query: 192 acctgcaggagcagctcgccaagccatatctggctcgagcaatggcggcggttgacccga 251
           ||||||||||||| ||  ||||||||||||| ||  | || |||| |||||| |||||| 
Sbjct: 331 acctgcaggagcaccttcccaagccatatctcgcgagggctatggtggcggtggacccgg 390

                                                                       
Query: 252 gccacccggagggcagcaaggggagggacaccaagggcatgagcgtgctccagcagcacg 311
            ||| |||   || | | ||||| | ||| ||   |||||||||||||| ||||||||||
Sbjct: 391 accatccgaccgggaccgaggggcgcgacccccgcggcatgagcgtgcttcagcagcacg 450

                                                                       
Query: 312 ccgccttctccgaccgcaacggcgacggggtaatctacccatgggagaccttccaaagcc 371
             || |||| |||||||||||||||||| ||  ||||||| |||||||| ||| || || 
Sbjct: 451 tggctttcttcgaccgcaacggcgacggcgtcgtctacccctgggagactttcaaaggca 510

                  
Query: 372 tgcgagc 378
           |||||||
Sbjct: 511 tgcgagc 517



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                     
Query: 530 acgtatgacactgaagggaggtttgaaccagcaaaattcgatgctatattcagcaagt 587
           |||||||||||||||||||||||||| ||| |||||||||| |||||||| |||||||
Sbjct: 669 acgtatgacactgaagggaggtttgacccatcaaaattcgacgctatatttagcaagt 726

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  113 bits (57), Expect = 7e-22
 Identities = 75/81 (92%)
 Strand = Plus / Plus

                                                                           
Query: 287     ggcatgagcgtgctccagcagcacgccgccttctccgaccgcaacggcgacggggtaatc 346
               ||||||||||||||||||||||||||||| |||| ||||||||||||||||||  | |||
Sbjct: 6387260 ggcatgagcgtgctccagcagcacgccgcgttcttcgaccgcaacggcgacggcatcatc 6387319

                                    
Query: 347     tacccatgggagaccttccaa 367
               ||||| |||||||||||||||
Sbjct: 6387320 tacccctgggagaccttccaa 6387340



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                           
Query: 454     ggggtggatgccttcccctctgctttcagtccatataaagaacatccacaggggcaagca 513
               ||||||||||||||| |||||| ||||  |||||||||||||||| |||| ||| |||||
Sbjct: 6388121 ggggtggatgccttctcctctgttttccatccatataaagaacattcacaagggtaagca 6388180

                                                     
Query: 514     tgggagcgattctgagacgtatgacactgaagggaggt 551
               |||||| || |||||  | ||||| |||||||||||||
Sbjct: 6388181 tgggagtgactctgaagcatatgatactgaagggaggt 6388218



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                             
Query: 173     gagcggaagctcaaccccgacctgcaggagcagctcgccaagccat 218
               |||||||||||||||||| ||||||||||||||||  |||||||||
Sbjct: 6386607 gagcggaagctcaaccccaacctgcaggagcagcttcccaagccat 6386652



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                   
Query: 548     aggtttgaaccagcaaaattcgatgctatattcagcaagtttggccgaactc 599
               |||||||| ||| | ||||| ||||||||||||||||||| |||| ||||||
Sbjct: 6388321 aggtttgatccatcgaaatttgatgctatattcagcaagtatggcagaactc 6388372



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                         
Query: 414     ccatactcctccacctcgtcctcacttatcctactcaaccgg 455
               |||||||| || ||||||||||||  ||||||||||||||||
Sbjct: 6387684 ccatactcatcaacctcgtcctcagctatcctactcaaccgg 6387725

---

>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09,
             complete sequence
          Length = 146568

 Score =  113 bits (57), Expect = 7e-22
 Identities = 75/81 (92%)
 Strand = Plus / Plus

                                                                         
Query: 287   ggcatgagcgtgctccagcagcacgccgccttctccgaccgcaacggcgacggggtaatc 346
             ||||||||||||||||||||||||||||| |||| ||||||||||||||||||  | |||
Sbjct: 67386 ggcatgagcgtgctccagcagcacgccgcgttcttcgaccgcaacggcgacggcatcatc 67445

                                  
Query: 347   tacccatgggagaccttccaa 367
             ||||| |||||||||||||||
Sbjct: 67446 tacccctgggagaccttccaa 67466



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                         
Query: 454   ggggtggatgccttcccctctgctttcagtccatataaagaacatccacaggggcaagca 513
             ||||||||||||||| |||||| ||||  |||||||||||||||| |||| ||| |||||
Sbjct: 68247 ggggtggatgccttctcctctgttttccatccatataaagaacattcacaagggtaagca 68306

                                                   
Query: 514   tgggagcgattctgagacgtatgacactgaagggaggt 551
             |||||| || |||||  | ||||| |||||||||||||
Sbjct: 68307 tgggagtgactctgaagcatatgatactgaagggaggt 68344



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                           
Query: 173   gagcggaagctcaaccccgacctgcaggagcagctcgccaagccat 218
             |||||||||||||||||| ||||||||||||||||  |||||||||
Sbjct: 66733 gagcggaagctcaaccccaacctgcaggagcagcttcccaagccat 66778



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                 
Query: 548   aggtttgaaccagcaaaattcgatgctatattcagcaagtttggccgaactc 599
             |||||||| ||| | ||||| ||||||||||||||||||| |||| ||||||
Sbjct: 68447 aggtttgatccatcgaaatttgatgctatattcagcaagtatggcagaactc 68498



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 414   ccatactcctccacctcgtcctcacttatcctactcaaccgg 455
             |||||||| || ||||||||||||  ||||||||||||||||
Sbjct: 67810 ccatactcatcaacctcgtcctcagctatcctactcaaccgg 67851

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  113 bits (57), Expect = 7e-22
 Identities = 75/81 (92%)
 Strand = Plus / Plus

                                                                           
Query: 287     ggcatgagcgtgctccagcagcacgccgccttctccgaccgcaacggcgacggggtaatc 346
               ||||||||||||||||||||||||||||| |||| ||||||||||||||||||  | |||
Sbjct: 6386473 ggcatgagcgtgctccagcagcacgccgcgttcttcgaccgcaacggcgacggcatcatc 6386532

                                    
Query: 347     tacccatgggagaccttccaa 367
               ||||| |||||||||||||||
Sbjct: 6386533 tacccctgggagaccttccaa 6386553



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                           
Query: 454     ggggtggatgccttcccctctgctttcagtccatataaagaacatccacaggggcaagca 513
               ||||||||||||||| |||||| ||||  |||||||||||||||| |||| ||| |||||
Sbjct: 6387334 ggggtggatgccttctcctctgttttccatccatataaagaacattcacaagggtaagca 6387393

                                                     
Query: 514     tgggagcgattctgagacgtatgacactgaagggaggt 551
               |||||| || |||||  | ||||| |||||||||||||
Sbjct: 6387394 tgggagtgactctgaagcatatgatactgaagggaggt 6387431



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                             
Query: 173     gagcggaagctcaaccccgacctgcaggagcagctcgccaagccat 218
               |||||||||||||||||| ||||||||||||||||  |||||||||
Sbjct: 6385820 gagcggaagctcaaccccaacctgcaggagcagcttcccaagccat 6385865



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                   
Query: 548     aggtttgaaccagcaaaattcgatgctatattcagcaagtttggccgaactc 599
               |||||||| ||| | ||||| ||||||||||||||||||| |||| ||||||
Sbjct: 6387534 aggtttgatccatcgaaatttgatgctatattcagcaagtatggcagaactc 6387585



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                         
Query: 414     ccatactcctccacctcgtcctcacttatcctactcaaccgg 455
               |||||||| || ||||||||||||  ||||||||||||||||
Sbjct: 6386897 ccatactcatcaacctcgtcctcagctatcctactcaaccgg 6386938

---

>ref|XM_473140.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 732

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                       
Query: 293 agcgtgctccagcagcacgccgccttctccgaccgcaacggcgacggggtaatctaccca 352
           |||||||| |||||||||| |||||||| ||||||| ||| | ||||  | |||||||||
Sbjct: 199 agcgtgctgcagcagcacgtcgccttcttcgaccgcgacgacaacggcatcatctaccca 258

                     
Query: 353 tgggagacct 362
           ||||| ||||
Sbjct: 259 tgggaaacct 268

---

>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
             complete sequence
          Length = 158601

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                         
Query: 293   agcgtgctccagcagcacgccgccttctccgaccgcaacggcgacggggtaatctaccca 352
             |||||||| |||||||||| |||||||| ||||||| ||| | ||||  | |||||||||
Sbjct: 15524 agcgtgctgcagcagcacgtcgccttcttcgaccgcgacgacaacggcatcatctaccca 15465

                       
Query: 353   tgggagacct 362
             ||||| ||||
Sbjct: 15464 tgggaaacct 15455

---

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                            
Query: 293      agcgtgctccagcagcacgccgccttctccgaccgcaacggcgacggggtaatctaccca 352
                |||||||| |||||||||| |||||||| ||||||| ||| | ||||  | |||||||||
Sbjct: 25529328 agcgtgctgcagcagcacgtcgccttcttcgaccgcgacgacaacggcatcatctaccca 25529269

                          
Query: 353      tgggagacct 362
                ||||| ||||
Sbjct: 25529268 tgggaaacct 25529259

---

>dbj|AK063625.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E12, full
           insert sequence
          Length = 1150

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                       
Query: 293 agcgtgctccagcagcacgccgccttctccgaccgcaacggcgacggggtaatctaccca 352
           |||||||| |||||||||| |||||||| ||||||| ||| | ||||  | |||||||||
Sbjct: 401 agcgtgctgcagcagcacgtcgccttcttcgaccgcgacgacaacggcatcatctaccca 460

                     
Query: 353 tgggagacct 362
           ||||| ||||
Sbjct: 461 tgggaaacct 470

---

>gb|AY370890.1| Hordeum vulgare caleosin 1 (Clo1) gene, complete cds
          Length = 2652

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 289 catgagcgtgctccagcagcacgccgccttctccgaccgc 328
           |||||||||||| |||||||||| |||||||| |||||||
Sbjct: 559 catgagcgtgctgcagcagcacgtcgccttcttcgaccgc 598

---

>gb|AY370889.1| Hordeum vulgare caleosin 1 (Clo1) mRNA, complete cds
          Length = 1069

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 289 catgagcgtgctccagcagcacgccgccttctccgaccgc 328
           |||||||||||| |||||||||| |||||||| |||||||
Sbjct: 369 catgagcgtgctgcagcagcacgtcgccttcttcgaccgc 408

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 309      acgccgccttctccgaccgcaac 331
                |||||||||||||||||||||||
Sbjct: 19248488 acgccgccttctccgaccgcaac 19248466

---

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 491     aagaacatccacaggggcaagcatgggagcgattc 525
               |||||||||||||  ||||||||||| ||||||||
Sbjct: 8024035 aagaacatccacaaaggcaagcatggaagcgattc 8024001

---

>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0046H10
          Length = 155544

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 491    aagaacatccacaggggcaagcatgggagcgattc 525
              |||||||||||||  ||||||||||| ||||||||
Sbjct: 131553 aagaacatccacaaaggcaagcatggaagcgattc 131519

---

>dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0592E11
          Length = 153734

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 491   aagaacatccacaggggcaagcatgggagcgattc 525
             |||||||||||||  ||||||||||| ||||||||
Sbjct: 47804 aagaacatccacaaaggcaagcatggaagcgattc 47770

---

>dbj|AK104598.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F08, full
           insert sequence
          Length = 1063

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 491 aagaacatccacaggggcaagcatgggagcgattc 525
           |||||||||||||  ||||||||||| ||||||||
Sbjct: 524 aagaacatccacaaaggcaagcatggaagcgattc 558

---

>dbj|AK073727.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057G06, full
           insert sequence
          Length = 1064

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 491 aagaacatccacaggggcaagcatgggagcgattc 525
           |||||||||||||  ||||||||||| ||||||||
Sbjct: 525 aagaacatccacaaaggcaagcatggaagcgattc 559

---

>dbj|AK060792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-E03, full
            insert sequence
          Length = 2067

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 491  aagaacatccacaggggcaagcatgggagcgattc 525
            |||||||||||||  ||||||||||| ||||||||
Sbjct: 1574 aagaacatccacaaaggcaagcatggaagcgattc 1608

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 309      acgccgccttctccgaccgcaac 331
                |||||||||||||||||||||||
Sbjct: 19174715 acgccgccttctccgaccgcaac 19174693

---

>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 136155

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 309   acgccgccttctccgaccgcaac 331
             |||||||||||||||||||||||
Sbjct: 81818 acgccgccttctccgaccgcaac 81796

---

>gb|BT017540.1| Zea mays clone EL01N0422C08.c mRNA sequence
          Length = 1288

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 198 aggagcagctcgccaagccatatctggctcgagc 231
           ||||||| ||| |||||||||||||||| |||||
Sbjct: 404 aggagcacctccccaagccatatctggcgcgagc 437

---

>gb|AY370892.1| Hordeum vulgare caleosin 2 (Clo2) gene, complete cds
          Length = 2118

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                       
Query: 292 gagcgtgctccagcagcacgccgccttctccgaccgcaacggcgacggggtaatctaccc 351
           ||||||||| ||||||||||  ||||||| ||||    | |||||||| || ||||||||
Sbjct: 364 gagcgtgctgcagcagcacgtagccttcttcgacatggatggcgacggcgtcatctaccc 423

                 
Query: 352 atggga 357
           ||||||
Sbjct: 424 atggga 429



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 494 aacatccacaggggcaagcatgggagcga 522
           ||||||||||||| ||||||||| |||||
Sbjct: 811 aacatccacagggccaagcatggcagcga 839

---

>gb|AY370891.1| Hordeum vulgare caleosin 2 (Clo2) mRNA, complete cds
          Length = 1132

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                       
Query: 292 gagcgtgctccagcagcacgccgccttctccgaccgcaacggcgacggggtaatctaccc 351
           ||||||||| ||||||||||  ||||||| ||||    | |||||||| || ||||||||
Sbjct: 204 gagcgtgctgcagcagcacgtagccttcttcgacatggatggcgacggcgtcatctaccc 263

                 
Query: 352 atggga 357
           ||||||
Sbjct: 264 atggga 269



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 494 aacatccacaggggcaagcatgggagcga 522
           ||||||||||||| ||||||||| |||||
Sbjct: 406 aacatccacagggccaagcatggcagcga 434

---

>emb|CR385067.9| Zebrafish DNA sequence from clone CH211-79A21 in linkage group 12,
             complete sequence
          Length = 203410

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 494   aacatccacaggggcaagcatg 515
             ||||||||||||||||||||||
Sbjct: 56623 aacatccacaggggcaagcatg 56602

---

>gb|AY043288.1| Hordeum vulgare calcium-binding protein 1 (CaBP1) mRNA, complete
           cds
          Length = 963

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                       
Query: 292 gagcgtgctccagcagcacgccgccttctccgaccgcaacggcgacggggtaatctaccc 351
           ||||||||| ||||||||||  ||||||| ||||    | |||||||| || ||||||||
Sbjct: 242 gagcgtgctgcagcagcacgtagccttcttcgacatggatggcgacggcgtcatctaccc 301

                 
Query: 352 atggga 357
           ||||||
Sbjct: 302 atggga 307



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 494 aacatccacaggggcaagcatgggagcga 522
           ||||||||||||| ||||||||| |||||
Sbjct: 441 aacatccacagggccaagcatggcagcga 469

---

>gb|AY104745.1| Zea mays PCO069403 mRNA sequence
          Length = 1383

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 198 aggagcagctcgccaagccatatctggctcgagc 231
           ||||||| ||| |||||||||||||||| |||||
Sbjct: 403 aggagcacctccccaagccatatctggcgcgagc 436

---

>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 295     cgtgctccagcagcacgccgc 315
               |||||||||||||||||||||
Sbjct: 1426241 cgtgctccagcagcacgccgc 1426261

---

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 105     ccgccgccatgtcgtcgtcga 125
               |||||||||||||||||||||
Sbjct: 1904917 ccgccgccatgtcgtcgtcga 1904937

---

>gb|AC164981.2| Mus musculus BAC clone RP23-121F5 from chromosome 17, complete
            sequence
          Length = 243701

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 35   ctccccaccctgcgctcccg 54
            ||||||||||||||||||||
Sbjct: 5643 ctccccaccctgcgctcccg 5624

---

>ref|XM_528515.1| PREDICTED: Pan troglodytes similar to doublesex and mab-3 related
           transcription factor 3; testis-specific protein;
           DMRT-like family A3 (LOC473145), mRNA
          Length = 2001

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 194 ctgcaggagcagctcgccaagcca 217
           ||||||| ||||||||||||||||
Sbjct: 148 ctgcaggcgcagctcgccaagcca 171

---

>ref|NM_190058.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2406

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 105 ccgccgccatgtcgtcgtcg 124
           ||||||||||||||||||||
Sbjct: 143 ccgccgccatgtcgtcgtcg 162

---

>ref|XM_418482.1| PREDICTED: Gallus gallus similar to DEAH (Asp-Glu-Ala-His) box
            polypeptide 30 isoform 2; DEAD/H (Asp-Glu-Ala-Asp/His)
            box polypeptide 30 (LOC420377), mRNA
          Length = 2373

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 178  gaagctcaaccccgacctgc 197
            ||||||||||||||||||||
Sbjct: 1896 gaagctcaaccccgacctgc 1915

---

>ref|NM_021240.2| Homo sapiens doublesex and mab-3 related transcription factor 3
           (DMRT3), mRNA
          Length = 2184

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 194 ctgcaggagcagctcgccaagcca 217
           ||||||| ||||||||||||||||
Sbjct: 468 ctgcaggcgcagctcgccaagcca 491

---

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 123     cgaccgatccgtcgctggcg 142
               ||||||||||||||||||||
Sbjct: 4202962 cgaccgatccgtcgctggcg 4202943

---

>gb|AY165140.1| Certhilauda albofasciata 16S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 603

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 410 acatccatactcctccacctcgtcctcacttatcct 445
           |||| |||||||| ||||||||  ||||||||||||
Sbjct: 110 acatacatactcccccacctcgggctcacttatcct 145

---

>emb|AL136365.9| Human DNA sequence from clone RP11-143M15 on chromosome 9p23-24.3
              Contains the DMRT1 gene for doublesex and mab-3 related
              transcription factor 1, the DMRT3 gene for doublesex and
              mab-3 related transcription factor 3 and four CpG islands,
              complete sequence
          Length = 179006

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 194    ctgcaggagcagctcgccaagcca 217
              ||||||| ||||||||||||||||
Sbjct: 155285 ctgcaggcgcagctcgccaagcca 155308

---

>emb|AL049636.22|HSDJ792G4 Human DNA sequence from clone RP4-792G4 on chromosome 1p31.2-32.2
             Contains the 5' end of the ALG6 gene for asparagine-linked
             glycosylation 6 homolog (yeast alpha-1
             3-glucosyltransferase), a DnaJ (Hsp40) homolog subfamily C
             member 7 (DNAJC7) pseudogene, the FOXD3 gene for forkhead
             box D3, a novel gene, the 5' end of a novel gene and a CpG
             island, complete sequence
          Length = 142728

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ggagggcagcaaggggaggg 278
             ||||||||||||||||||||
Sbjct: 58331 ggagggcagcaaggggaggg 58312

---

>gb|AC144743.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0009H09,
             complete sequence
          Length = 148740

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   ccgccgccatgtcgtcgtcg 124
             ||||||||||||||||||||
Sbjct: 88968 ccgccgccatgtcgtcgtcg 88949

---

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 123     cgaccgatccgtcgctggcg 142
               ||||||||||||||||||||
Sbjct: 1378453 cgaccgatccgtcgctggcg 1378472

---

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 123     cgaccgatccgtcgctggcg 142
               ||||||||||||||||||||
Sbjct: 4577606 cgaccgatccgtcgctggcg 4577587

---

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 105      ccgccgccatgtcgtcgtcg 124
                ||||||||||||||||||||
Sbjct: 23264911 ccgccgccatgtcgtcgtcg 23264892

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 105      ccgccgccatgtcgtcgtcg 124
                ||||||||||||||||||||
Sbjct: 41065568 ccgccgccatgtcgtcgtcg 41065549

---

>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0492G09
          Length = 142239

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    ccgccgccatgtcgtcgtcg 124
              ||||||||||||||||||||
Sbjct: 102498 ccgccgccatgtcgtcgtcg 102479

---

>gb|AF193873.1|AF193873 Homo sapiens testis-specific protein mRNA, partial cds,
           alternatively spliced
          Length = 1760

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 194 ctgcaggagcagctcgccaagcca 217
           ||||||| ||||||||||||||||
Sbjct: 45  ctgcaggcgcagctcgccaagcca 68

---

>gb|AF193872.1|AF193872 Homo sapiens putative DM domain protein gene, partial cds
          Length = 685

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 194 ctgcaggagcagctcgccaagcca 217
           ||||||| ||||||||||||||||
Sbjct: 592 ctgcaggcgcagctcgccaagcca 615

---

>emb|AJ328770.1|HSA328770 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-NH18C
          Length = 769

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 194 ctgcaggagcagctcgccaagcca 217
           ||||||| ||||||||||||||||
Sbjct: 46  ctgcaggcgcagctcgccaagcca 69

---

>dbj|AK073548.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C05, full
           insert sequence
          Length = 1078

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 105 ccgccgccatgtcgtcgtcg 124
           ||||||||||||||||||||
Sbjct: 374 ccgccgccatgtcgtcgtcg 393

---

>emb|AJ301581.1|HSA301581 Homo sapiens partial mRNA for doublesex-mab-3 (DM) domain (DMRT3
           gene)
          Length = 372

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 194 ctgcaggagcagctcgccaagcca 217
           ||||||| ||||||||||||||||
Sbjct: 295 ctgcaggcgcagctcgccaagcca 318

---

>gb|AC154475.2| Mus musculus BAC clone RP24-130B12 from 17, complete sequence
          Length = 117680

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    ctccccaccctgcgctcccg 54
             ||||||||||||||||||||
Sbjct: 58415 ctccccaccctgcgctcccg 58396

---

>gb|AC149216.5| Mus musculus BAC clone RP24-194H8 from 18, complete sequence
          Length = 193186

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    gcttgggtccccttcagcct 404
              ||||||||||||||||||||
Sbjct: 119823 gcttgggtccccttcagcct 119842


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,006,336
Number of Sequences: 3902068
Number of extensions: 4006336
Number of successful extensions: 81755
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80951
Number of HSP's gapped (non-prelim): 801
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---