ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart38b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480589.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.12
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
3dbj|AP003858.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
4dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
5dbj|AK106289.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
6gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 44 0.47
7emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.47
8gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.47
9gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.47
10gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.8
11gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 42 1.8
12gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 42 1.8
13gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide... 42 1.8
14ref|XM_314506.2| Anopheles gambiae str. PEST ENSANGP00000020521 ... 42 1.8
15gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.8
16ref|NM_194777.1| Oryza sativa (japonica cultivar-group) unknown ... 40 7.3
17gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
18gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 40 7.3
19ref|XM_418021.1| PREDICTED: Gallus gallus similar to signal pept... 40 7.3
20gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
21emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 7.3
22emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete ... 40 7.3
23gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 7.3
24gb|AE005747.1| Caulobacter crescentus CB15 section 73 of 359 of ... 40 7.3
25gb|AE005730.1| Caulobacter crescentus CB15 section 56 of 359 of ... 40 7.3
26gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, c... 40 7.3
27gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, c... 40 7.3
28gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 7.3
29dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
30dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
31gb|AC007810.6|AC007810 Drosophila melanogaster, chromosome 3R, r... 40 7.3
32dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 7.3
33dbj|AB190763.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
34dbj|AB190762.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
35dbj|AB190761.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
36dbj|AB190760.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
37dbj|AB190759.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
38dbj|AB190758.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
39dbj|AB190757.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
40dbj|AB190756.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
41dbj|AB190755.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
42dbj|AB190754.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
43dbj|AB190753.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
44dbj|AB190752.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
45dbj|AB190751.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
46dbj|AB190750.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
47dbj|AB190749.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
48dbj|AB190748.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
49dbj|AB190747.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
50dbj|AB190746.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
51dbj|AB190745.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
52dbj|AB190744.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
53dbj|AB190743.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
54dbj|AB190742.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
55dbj|AB190741.1| Burkholderia plantarii gene for DNA-directed RNA... 40 7.3
56dbj|AK119430.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
57gb|AE003719.3| Drosophila melanogaster chromosome 3R, section 57... 40 7.3
58gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.3
59gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
60gb|AC140943.1| Gallus gallus BAC clone TAM32-50F18 from chromoso... 40 7.3
61dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 7.3 
>ref|XM_480589.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1768

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                       
Query: 234 cctcttccgctgcgcggccgcgcgcaagcgctggcgcgacctcgtcaccgagccgtcctt 293
           ||||||||||||||| || ||| ||||||| |||| |  |||| || |||| | | ||||
Sbjct: 174 cctcttccgctgcgccgcagcgtgcaagcggtggctccgcctcatcgccgaccaggcctt 233

                              
Query: 294 cctgcgccgccgctggccg 312
            || |||||||||||||||
Sbjct: 234 actccgccgccgctggccg 252
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                           
Query: 234     cctcttccgctgcgcggccgcgcgcaagcgctggcgcgacctcgtcaccgagccgtcctt 293
               ||||||||||||||| || ||| ||||||| |||| |  |||| || |||| | | ||||
Sbjct: 6049658 cctcttccgctgcgccgcagcgtgcaagcggtggctccgcctcatcgccgaccaggcctt 6049717

                                  
Query: 294     cctgcgccgccgctggccg 312
                || |||||||||||||||
Sbjct: 6049718 actccgccgccgctggccg 6049736
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>dbj|AP003858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1014_H11
          Length = 122464

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                          
Query: 234    cctcttccgctgcgcggccgcgcgcaagcgctggcgcgacctcgtcaccgagccgtcctt 293
              ||||||||||||||| || ||| ||||||| |||| |  |||| || |||| | | ||||
Sbjct: 100470 cctcttccgctgcgccgcagcgtgcaagcggtggctccgcctcatcgccgaccaggcctt 100529

                                 
Query: 294    cctgcgccgccgctggccg 312
               || |||||||||||||||
Sbjct: 100530 actccgccgccgctggccg 100548
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>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0486F07
          Length = 154926

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                        
Query: 234  cctcttccgctgcgcggccgcgcgcaagcgctggcgcgacctcgtcaccgagccgtcctt 293
            ||||||||||||||| || ||| ||||||| |||| |  |||| || |||| | | ||||
Sbjct: 5675 cctcttccgctgcgccgcagcgtgcaagcggtggctccgcctcatcgccgaccaggcctt 5734

                               
Query: 294  cctgcgccgccgctggccg 312
             || |||||||||||||||
Sbjct: 5735 actccgccgccgctggccg 5753
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>dbj|AK106289.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B01, full
           insert sequence
          Length = 1768

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                       
Query: 234 cctcttccgctgcgcggccgcgcgcaagcgctggcgcgacctcgtcaccgagccgtcctt 293
           ||||||||||||||| || ||| ||||||| |||| |  |||| || |||| | | ||||
Sbjct: 174 cctcttccgctgcgccgcagcgtgcaagcggtggctccgcctcatcgccgaccaggcctt 233

                              
Query: 294 cctgcgccgccgctggccg 312
            || |||||||||||||||
Sbjct: 234 actccgccgccgctggccg 252
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 483     ccgcgtcgtgccgctcgcctcg 504
               ||||||||||||||||||||||
Sbjct: 2330705 ccgcgtcgtgccgctcgcctcg 2330684
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 483     ccgcgtcgtgccgctcgcctcg 504
               ||||||||||||||||||||||
Sbjct: 1054636 ccgcgtcgtgccgctcgcctcg 1054657
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 342     cggcttcctcggccgggagcgtcgcc 367
               ||||||||||||||| ||||||||||
Sbjct: 1795570 cggcttcctcggccgtgagcgtcgcc 1795545
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 208     ctggcgcgcgtgcccggcgtcgccgacctc 237
               ||||||||| |||||||| |||||||||||
Sbjct: 1439068 ctggcgcgcctgcccggcttcgccgacctc 1439039
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 242     gctgcgcggccgcgcgcaagc 262
               |||||||||||||||||||||
Sbjct: 2184927 gctgcgcggccgcgcgcaagc 2184947
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 411    gtggtcggtcctcggccccggtcgt 435
              |||||||||||||||| ||||||||
Sbjct: 991378 gtggtcggtcctcggcgccggtcgt 991402
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 223    ggcgtcgccgacctcttccgctgcg 247
              ||||||||||||| |||||||||||
Sbjct: 193809 ggcgtcgccgaccgcttccgctgcg 193785
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>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145
            biosynthetic gene cluster, complete sequence
          Length = 126933

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 364  cgccagggcggggaagggccgccgg 388
            |||| ||||||||||||||||||||
Sbjct: 6832 cgcctgggcggggaagggccgccgg 6856
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>ref|XM_314506.2| Anopheles gambiae str. PEST ENSANGP00000020521
           (ENSANGG00000018032), partial mRNA
          Length = 2821

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 35  ctgccctttccctcggcggaa 55
           |||||||||||||||||||||
Sbjct: 718 ctgccctttccctcggcggaa 698
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 262     cgctggcgcgacctcgtcacc 282
               |||||||||||||||||||||
Sbjct: 3070217 cgctggcgcgacctcgtcacc 3070237
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>ref|NM_194777.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0087H07.14), mRNA
          Length = 1161

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 257 gcaagcgctggcgcgacctcgtcaccga 284
           ||||||||||||||  ||||||||||||
Sbjct: 137 gcaagcgctggcgccgcctcgtcaccga 164
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>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006B22, complete sequence
          Length = 166052

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 257   gcaagcgctggcgcgacctcgtcaccga 284
             ||||||||||||||  ||||||||||||
Sbjct: 71546 gcaagcgctggcgccgcctcgtcaccga 71519
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>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 468    tggcctcttggacgaccgcgtcgt 491
              |||||||||| |||||||||||||
Sbjct: 261096 tggcctcttgcacgaccgcgtcgt 261119
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>ref|XM_418021.1| PREDICTED: Gallus gallus similar to signal peptide, CUB domain,
            EGF-like 3; CUB and EGF containing protein 3; CUB domain
            and EGF-like repeat containing 3 (LOC419896), mRNA
          Length = 4029

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 373  ggggaagggccgccgggctc 392
            ||||||||||||||||||||
Sbjct: 2439 ggggaagggccgccgggctc 2458
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 257     gcaagcgctggcgcgacctcgtcaccga 284
               ||||||||||||||  ||||||||||||
Sbjct: 2279444 gcaagcgctggcgccgcctcgtcaccga 2279417
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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   ccgcgcgcaagcgctggcgc 270
             ||||||||||||||||||||
Sbjct: 45570 ccgcgcgcaagcgctggcgc 45551
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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 493    ccgctcgcctcgcaccgcggcgcgctcc 520
              ||||||||| ||| ||||||||||||||
Sbjct: 119554 ccgctcgccgcgcgccgcggcgcgctcc 119527
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 454     gtcccgggcgccgctggcct 473
               ||||||||||||||||||||
Sbjct: 1948815 gtcccgggcgccgctggcct 1948834
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>gb|AE005747.1| Caulobacter crescentus CB15 section 73 of 359 of the complete genome
          Length = 11070

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 504  gcaccgcggcgcgctcctcg 523
            ||||||||||||||||||||
Sbjct: 1009 gcaccgcggcgcgctcctcg 1028
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>gb|AE005730.1| Caulobacter crescentus CB15 section 56 of 359 of the complete genome
          Length = 14506

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 209   tggcgcgcgtgcccggcgtcgccg 232
             |||||||| |||||||||||||||
Sbjct: 13859 tggcgcgcttgcccggcgtcgccg 13836
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>gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, complete sequence
          Length = 156654

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 257    gcaagcgctggcgcgacctcgtcaccga 284
              ||||||||||||||  ||||||||||||
Sbjct: 105098 gcaagcgctggcgccgcctcgtcaccga 105071
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>gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, complete sequence
          Length = 132268

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 257  gcaagcgctggcgcgacctcgtcaccga 284
            ||||||||||||||  ||||||||||||
Sbjct: 8444 gcaagcgctggcgccgcctcgtcaccga 8417
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    gcgcgcgtgcccggcgtcgc 230
              ||||||||||||||||||||
Sbjct: 155214 gcgcgcgtgcccggcgtcgc 155233
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 257     gcaagcgctggcgcgacctcgtcaccga 284
               ||||||||||||||  ||||||||||||
Sbjct: 2279444 gcaagcgctggcgccgcctcgtcaccga 2279417
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 257      gcaagcgctggcgcgacctcgtcaccga 284
                ||||||||||||||  ||||||||||||
Sbjct: 14736132 gcaagcgctggcgccgcctcgtcaccga 14736105
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>gb|AC007810.6|AC007810 Drosophila melanogaster, chromosome 3R, region 90C-90C, BAC clone
             BACR14A01, complete sequence
          Length = 176735

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 488   tcgtgccgctcgcctcgcac 507
             ||||||||||||||||||||
Sbjct: 74715 tcgtgccgctcgcctcgcac 74696
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 201     ggagatcctggcgcgcgtgc 220
               ||||||||||||||||||||
Sbjct: 1158744 ggagatcctggcgcgcgtgc 1158763
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>dbj|AB190763.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 301723
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190762.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 311032
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190761.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 311031
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190760.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 311030
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190759.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 311029
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190758.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302936
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190757.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302924
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190756.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302916
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190755.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302909
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190754.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302907
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190753.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302485
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190752.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302484
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190751.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302482
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190750.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302479
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190749.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302476
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190748.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302470
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190747.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302466
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190746.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302413
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190745.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302412
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190744.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302391
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190743.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302388
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190742.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302387
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AB190741.1| Burkholderia plantarii gene for DNA-directed RNA polymerase subunit
           D, partial cds, strain: MAFF 302381
          Length = 829

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cctcgtcggcttcctcggcc 355
           ||||||||||||||||||||
Sbjct: 246 cctcgtcggcttcctcggcc 227
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>dbj|AK119430.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-A03, full
           insert sequence
          Length = 2800

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 257 gcaagcgctggcgcgacctcgtcaccga 284
           ||||||||||||||  ||||||||||||
Sbjct: 283 gcaagcgctggcgccgcctcgtcaccga 310
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>gb|AE003719.3| Drosophila melanogaster chromosome 3R, section 57 of 118 of the
             complete sequence
          Length = 212941

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 488   tcgtgccgctcgcctcgcac 507
             ||||||||||||||||||||
Sbjct: 27937 tcgtgccgctcgcctcgcac 27918
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 267     gcgcgacctcgtcaccgagc 286
               ||||||||||||||||||||
Sbjct: 1843766 gcgcgacctcgtcaccgagc 1843785
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 257     gcaagcgctggcgcgacctcgtcaccga 284
               ||||||||||||||  ||||||||||||
Sbjct: 2279395 gcaagcgctggcgccgcctcgtcaccga 2279368
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>gb|AC140943.1| Gallus gallus BAC clone TAM32-50F18 from chromosome ul, complete
             sequence
          Length = 142253

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   ggggaagggccgccgggctc 392
             ||||||||||||||||||||
Sbjct: 90583 ggggaagggccgccgggctc 90564
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 369     gggcggggaagggccgccgg 388
               ||||||||||||||||||||
Sbjct: 1344756 gggcggggaagggccgccgg 1344775


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,296,742
Number of Sequences: 3902068
Number of extensions: 3296742
Number of successful extensions: 72591
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69761
Number of HSP's gapped (non-prelim): 2830
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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