Clone Name | bart37h11 |
---|---|
Clone Library Name | barley_pub |
>TPM4_DROME (P49455) Tropomyosin 1, isoforms 33/34 (Tropomyosin II)| Length = 518 Score = 32.7 bits (73), Expect = 0.21 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Frame = +1 Query: 16 PLAMGAADEHHEEASPL--LAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAPRD 189 P A GAA A P PPAD PPA+ A P G A A AP D Sbjct: 414 PAAEGAAPPAEGAAPPAEGAVPPADGAAPPAEGAAPAAEGAAPPADGAAPPAEAAAAPAD 473 Query: 190 S 192 + Sbjct: 474 A 474 Score = 32.0 bits (71), Expect = 0.37 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = +1 Query: 16 PLAMGAAD--EHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDA 180 P A GAA E A+ APPAD PPA+ A P P APA +A Sbjct: 435 PPADGAAPPAEGAAPAAEGAAPPADGAAPPAEAAAAPADAAAPAAEAAPAEAPAAEA 491
>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)| Length = 387 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 5/31 (16%) Frame = +1 Query: 1 YHHHPPLAM-----GAADEHHEEASPLLAPP 78 +HHHPP AA+E EE +PLL PP Sbjct: 51 HHHHPPPPQQPQRAAAAEEEDEEKAPLLLPP 81
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 5/31 (16%) Frame = +1 Query: 1 YHHHPPLAM-----GAADEHHEEASPLLAPP 78 +HHHPP AA+E EE +PLL PP Sbjct: 51 HHHHPPPPQQPQRAAAAEEEDEEKAPLLLPP 81
>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)| Length = 4289 Score = 31.2 bits (69), Expect = 0.63 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 6/80 (7%) Frame = +1 Query: 61 PLLAPPADEKLPPAQDPAKG------CADGVPVLMGEPVAAPAGDAPRDSWDSGILSCLG 222 P + P D ++PP+ P+ C D + G V P P W S C G Sbjct: 165 PTCSDPTDAEIPPSSPPSASGSCPDDCNDQGRCVRGRCVCFPGYTGPSCGWPSCPGDCQG 224 Query: 223 RNDDFCSSDLEVCLLGSVAP 282 R C + VC G P Sbjct: 225 RGR--CVQGVCVCRAGFSGP 242
>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (HFK1) Length = 477 Score = 31.2 bits (69), Expect = 0.63 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = +1 Query: 13 PPLA--MGAADEHHEEASP--LLAPPADEKLPPAQDPAKGC 123 PPLA G A + ++E P LL PP D PP+ A GC Sbjct: 79 PPLAPQAGGAAQSNDEKGPQLLLLPPTDHHRPPSGAKAGGC 119
>NGCA_CHICK (Q03696) Neuronal-glial cell adhesion molecule precursor (Ng-CAM)| Length = 1266 Score = 30.8 bits (68), Expect = 0.82 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +1 Query: 40 EHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAP 183 EHH ++P+ PPA + P +G G V+ EP+ A +AP Sbjct: 685 EHHAPSAPIETPPAAPERNPGGVHGEGNETGNLVITWEPLPPQAWNAP 732
>GCP60_HUMAN (Q9H3P7) Golgi resident protein GCP60 (Acyl-CoA-binding| domain-containing protein 3) (Golgi phosphoprotein 1) (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1) (PBR- and PKA-associated protein 7) (Peripherial benzodiazepine receptor-asso Length = 527 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = +1 Query: 52 EASPLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAPRDS 192 E +PLL PP LPP P G G EP A AG A ++ Sbjct: 29 EGAPLLPPP----LPPPSPPGSGRGPGASGEQPEPGEAAAGGAAEEA 71
>SOS2_MOUSE (Q02384) Son of sevenless homolog 2 (SOS-2) (mSOS-2) (Fragment)| Length = 1297 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +1 Query: 73 PPADEKLPPAQDPAKGCADGVPVLMGE---PVAAPAGDAPRD 189 PPA +PP Q P VPVLMG PV +P PRD Sbjct: 1137 PPA---IPPRQPPPPKVKPRVPVLMGTFDGPVPSPPPPPPRD 1175
>MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein) (86 kDa| protein) Length = 537 Score = 30.0 bits (66), Expect = 1.4 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 9/68 (13%) Frame = +1 Query: 7 HHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVLM---------GEPV 159 H PP E H A PPA E P A+ PA A+ P G P Sbjct: 60 HAPP-----PKEEHAPAPAAETPPAPEHPPDAEQPAAPAAEHAPTPTHEAAPAHEEGPPP 114 Query: 160 AAPAGDAP 183 AAPA +AP Sbjct: 115 AAPA-EAP 121
>RNE_ECOLI (P21513) Ribonuclease E (EC 3.1.4.-) (RNase E)| Length = 1061 Score = 29.6 bits (65), Expect = 1.8 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Frame = +1 Query: 7 HHPPLAMGAADEHHEEA---SPLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGD 177 H +A+ + +E E P LA A +PPA PA+ A PV+ P AAPA Sbjct: 506 HEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAA---PVVAPAPKAAPA-- 560 Query: 178 APRDSWDSGILS 213 P G+LS Sbjct: 561 TPAAPAQPGLLS 572
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/53 (30%), Positives = 18/53 (33%) Frame = +1 Query: 61 PLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAPRDSWDSGILSCL 219 P PP P P A PVA+PA +P S G S L Sbjct: 28 PQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSL 80
>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47| Length = 641 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/60 (35%), Positives = 25/60 (41%) Frame = +1 Query: 73 PPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAPRDSWDSGILSCLGRNDDFCSSDL 252 P A PPA +P+ CA EPV A P + LSCL FCS+ L Sbjct: 103 PSAPSAPPPAPEPSAPCAPEQWPAGEEPVRCDA--CPEGAALPAALSCLSCLASFCSAHL 160
>FTSB_XANCP (Q8P9Z2) Cell division protein ftsB homolog| Length = 121 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +1 Query: 52 EASPLLAPPADEKLPPAQDPA 114 E +PLL P A E PPAQ PA Sbjct: 92 EDAPLLPPAAQEAAPPAQPPA 112
>DOC2A_HUMAN (Q14183) Double C2-like domain-containing protein alpha| (Doc2-alpha) (Doc2) Length = 400 Score = 28.9 bits (63), Expect = 3.1 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Frame = +1 Query: 133 VPVLMGEPVA-----APAGDAPRDSWDSGILSCLGRNDDFCSSDLEVCLLGSVAPCVLYG 297 VP+ + P A P A DS+DS + LG LE LL A C L+ Sbjct: 57 VPLALAPPAALLGATTPEDGAEVDSYDSDDATALGT--------LEFDLLYDRASCTLHC 108 Query: 298 SNVERLAAAPGTFANSCLPYTGLYML 375 S + P F PY L++L Sbjct: 109 SILRAKGLKPMDFNGLADPYVKLHLL 134
>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)| Length = 706 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/53 (30%), Positives = 18/53 (33%) Frame = +1 Query: 61 PLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAPRDSWDSGILSCL 219 P PP P P A PVA+PA +P S G S L Sbjct: 28 PQPPPPPPSAASPGATPGSATASAERASTAAPVASPAAPSPGSSGGGGFFSSL 80
>PIV6_ADE40 (P48309) Minor capsid protein 6 precursor (Minor capsid protein VI)| [Contains: Protease cofactor] Length = 267 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Frame = +1 Query: 16 PLAMGAADEHHEEASP--LLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAPRD 189 P+ A + +E+ P L PP +PP P G A P VA PA Sbjct: 185 PIGSMARPVYGKESKPVTLELPPPVPTVPPMPAPTLGTAVSRPTAPTVAVATPARRPRGA 244 Query: 190 SWDSGILSCLG 222 +W S + S +G Sbjct: 245 NWQSTLNSIVG 255
>EDD1_HUMAN (O95071) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic| discs protein homolog) (hHYD) (Progestin-induced protein) Length = 2799 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +1 Query: 22 AMGAADEHHEEASPLLAPPADEKLPPAQDP 111 A ++ +H + SP +APP+ PPA DP Sbjct: 1006 AGASSSDHQDPVSPPIAPPSWVPDPPAMDP 1035
>ZC11A_CHICK (Q5ZJJ1) Zinc finger CCCH-type domain-containing protein 11A| Length = 723 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +1 Query: 10 HPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVL 144 HPP+ + AAD+ E+ L+ +E P Q PA+ +G+ ++ Sbjct: 152 HPPVVINAADD-DEDDDDQLSEEGEETKTPVQQPAEENHNGLRII 195
>GR65_HUMAN (Q9BQQ3) Golgi reassembly-stacking protein 1 (Golgi| reassembly-stacking protein of 65 kDa) (GRASP65) (Golgi peripheral membrane protein p65) (Golgi phosphoprotein 5) (GOLPH5) Length = 439 Score = 28.5 bits (62), Expect = 4.1 Identities = 29/98 (29%), Positives = 38/98 (38%) Frame = +1 Query: 73 PPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAPRDSWDSGILSCLGRNDDFCSSDL 252 PP+ K PP P G P P A P G P DS L R D+ + L Sbjct: 205 PPSYHKKPPGTPPPSALPLGAP----PPDALPPGPTPE---DSPSLETGSRQSDYMEALL 257 Query: 253 EVCLLGSVAPCVLYGSNVERLAAAPGTFANSCLPYTGL 366 + AP GS++E PG+ ++S GL Sbjct: 258 Q-------AP----GSSMEDPLPGPGSPSHSAPDPDGL 284
>DAG1_MOUSE (Q62165) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 893 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +1 Query: 58 SPLLAPPADEKLPPAQDPAKG 120 SP +APP + PP +DP G Sbjct: 342 SPAIAPPTETMAPPVRDPVPG 362
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 28.5 bits (62), Expect = 4.1 Identities = 23/69 (33%), Positives = 23/69 (33%), Gaps = 5/69 (7%) Frame = +1 Query: 13 PPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCA-----DGVPVLMGEPVAAPAGD 177 PP G E E A P K PP D KG G P GEP A Sbjct: 1301 PPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDG 1360 Query: 178 APRDSWDSG 204 P D D G Sbjct: 1361 PPGDKGDDG 1369
>PLAS_HORVU (P08248) Plastocyanin, chloroplast precursor| Length = 155 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/93 (23%), Positives = 35/93 (37%) Frame = +1 Query: 100 AQDPAKGCADGVPVLMGEPVAAPAGDAPRDSWDSGILSCLGRNDDFCSSDLEVCLLGSVA 279 AQD G GV V + AG+ ++G + ++D S ++V + Sbjct: 58 AQDVLLGANGGVLVFEPNDFSVKAGETITFKNNAGYPHNVVFDEDAVPSGVDVSKISQEE 117 Query: 280 PCVLYGSNVERLAAAPGTFANSCLPYTGLYMLG 378 G PGT+ C P+ G M+G Sbjct: 118 YLTAPGETFSVTLTVPGTYGFYCEPHAGAGMVG 150
>GNDS_RAT (Q03386) Ral guanine nucleotide dissociation stimulator (RalGEF)| (RalGDS) Length = 895 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/55 (32%), Positives = 25/55 (45%) Frame = +1 Query: 13 PPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGD 177 P L++ A + + LL P P ++PA VPVL PV APA + Sbjct: 253 PVLSLKPASQLEPAPALLLTPSRAVASTPVREPAP-----VPVLASSPVVAPASE 302
>DAG1_RABIT (Q28685) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +1 Query: 58 SPLLAPPADEKLPPAQDPAKG 120 SP +APP + PP +DP G Sbjct: 344 SPAIAPPTETMAPPVRDPVPG 364
>DAG1_HUMAN (Q14118) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +1 Query: 58 SPLLAPPADEKLPPAQDPAKG 120 SP +APP + PP +DP G Sbjct: 344 SPAIAPPTETMAPPVRDPVPG 364
>DAG1_BOVIN (O18738) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +1 Query: 58 SPLLAPPADEKLPPAQDPAKG 120 SP +APP + PP +DP G Sbjct: 344 SPAIAPPTETMAPPVRDPVPG 364
>DAG1_CANFA (Q9TSZ6) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 892 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +1 Query: 58 SPLLAPPADEKLPPAQDPAKG 120 SP +APP + PP +DP G Sbjct: 341 SPAIAPPTETMAPPVRDPVPG 361
>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)| Length = 426 Score = 28.1 bits (61), Expect = 5.3 Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 17/97 (17%) Frame = +1 Query: 58 SPLLAPPADEKLPPAQDPAKGCADGVPVLM----------------GEPVAAPAGDAPRD 189 SPLL PP PP P+ A P++ PV P + Sbjct: 229 SPLLPPPPPVAYPPVMTPSPSPAAEPPIIAPFPSPPANPPLIPRRPAPPVVKPLPPLGKP 288 Query: 190 SWDSGILSCLGRNDDFCSSDLEVCLL-GSVAPCVLYG 297 SG++ C N + L LL G+V + YG Sbjct: 289 PIVSGLVYCKSCNSYGVPTLLNASLLQGAVVKLICYG 325
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 5/51 (9%) Frame = +1 Query: 70 APPADEKLPPAQDPAKGCADG-----VPVLMGEPVAAPAGDAPRDSWDSGI 207 APPA PPA P G G P +AP G P SG+ Sbjct: 124 APPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGV 174
>YKAA_CAEEL (P34261) Putative amino-acid permease B0303.11| Length = 903 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 Query: 283 CVLYGSNVERLAAAPGTFANSCLPYTGLYMLGNSLF 390 C+L S V+ L +A G++ C+P T Y+ +LF Sbjct: 346 CLLLLSTVQILVSAIGSYDILCIPTTVFYLFAYALF 381
>PEVRA_PIG (Q863Y7) Endogenous retrovirus A receptor precursor| Length = 446 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +1 Query: 22 AMGAADEHHEEASPLLAPPADEK-LPPAQDPA 114 A G +E EEASPL PP+ P+ DPA Sbjct: 237 APGVEEEEEEEASPLQEPPSQAAGNTPSPDPA 268
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +1 Query: 13 PPLAMGAADEHHEEASPLLAPPADEKL-PPAQDPAKGCADGVPVLMGEPVA 162 PPLA G + + LL PP + L PP+ P+ A +P+L P A Sbjct: 585 PPLAPGEPEGPSLLVASLLPPPPSDLLPPPSAPPSNLLASFLPLLALGPTA 635
>RS2_STRAW (Q82JX7) 30S ribosomal protein S2| Length = 308 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Frame = +1 Query: 16 PLAMGAAD--EHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAP 183 PLA D E ++A AP A E PA+ A+ A P APA +AP Sbjct: 244 PLAAWERDLLEGEKKADEAEAPAAAEAEKPAEAAAEAPAAEAPAAEAPAAEAPAAEAP 301
>HERC2_DROME (Q9VR91) HECT domain and RCC1-like domain-containing protein 2| Length = 4912 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +1 Query: 130 GVPVLMGEPVAAPAGDAPRDSWDSGI 207 G P+ + E +A G+AP D+ D+G+ Sbjct: 3466 GAPLQLAETIAQGGGEAPADATDAGL 3491
>XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG protein)| Length = 439 Score = 27.7 bits (60), Expect = 6.9 Identities = 21/57 (36%), Positives = 24/57 (42%) Frame = +1 Query: 13 PPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAP 183 P A G A E +P AP E PA PA+G A GE A G+AP Sbjct: 103 PAPAEGGAPAPAEGGAPAPAPAEGEA--PAPAPAEGEAPAPAPAEGEAPAPAEGEAP 157
>POLN_ONNVG (P13886) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC 3.6.1. Length = 2514 Score = 27.7 bits (60), Expect = 6.9 Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 6/72 (8%) Frame = +1 Query: 58 SPLLAPPADEKLPPAQDPAKGCADG--VPVLMGEPVAAP----AGDAPRDSWDSGILSCL 219 SP PADE + Q P + C D V + E V P A DA D G +S Sbjct: 1653 SPRTYRPADEIIQTPQTPTEACQDAQLVQSINDEAVPVPSDLEACDATMDWPSIGTVSTR 1712 Query: 220 GRNDDFCSSDLE 255 R+D SSD E Sbjct: 1713 QRHD---SSDSE 1721
>EDD1_MOUSE (Q80TP3) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic| discs protein homolog) Length = 2792 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +1 Query: 22 AMGAADEHHEEASPLLAPPADEKLPPAQDP 111 A ++ +H + SP +APP+ PP+ DP Sbjct: 1000 AGASSSDHQDPVSPPIAPPSWVPDPPSMDP 1029
>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)| Length = 2001 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = +1 Query: 4 HHHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAA 165 HHHP + A+ A L PP+ + PPA P G + P P++A Sbjct: 183 HHHPNPFVAAS------APSLPPPPSSLQAPPAITPIAGLSAPAPASGSLPLSA 230
>MUTS_BURPS (Q63SR9) DNA mismatch repair protein mutS| Length = 890 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 7 HHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCAD 129 HHPP A AA H+ LL P + L + + AD Sbjct: 326 HHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIAD 366
>MUTS_BURP1 (Q3JQS6) DNA mismatch repair protein mutS| Length = 890 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 7 HHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCAD 129 HHPP A AA H+ LL P + L + + AD Sbjct: 326 HHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIAD 366
>MUTS_BURMA (Q62J26) DNA mismatch repair protein mutS| Length = 891 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 7 HHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCAD 129 HHPP A AA H+ LL P + L + + AD Sbjct: 326 HHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIAD 366
>CAPON_HUMAN (O75052) Carboxyl-terminal PDZ ligand of neuronal nitric oxide| synthase protein (C--terminal PDZ ligand of neuronal nitric oxide synthase protein) (Nitric oxide synthase 1 adaptor protein) Length = 506 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/49 (38%), Positives = 19/49 (38%), Gaps = 13/49 (26%) Frame = +1 Query: 7 HHPPLAMGAADEHHEEASPL-------------LAPPADEKLPPAQDPA 114 H PPL G AD H SPL PP D PPAQ A Sbjct: 400 HSPPLGAGLADFAHPAGSPLGRRDCLVKLECFRFLPPEDTP-PPAQGEA 447
>MUTS_BURS3 (Q39EX8) DNA mismatch repair protein mutS| Length = 885 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 7 HHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCAD 129 HHPP A AA + LL PA+ L + + AD Sbjct: 318 HHPPRASVAAQSRQQAIGALLDAPANASLDALRSALRQIAD 358
>RSSA_STRPU (P46771) 40S ribosomal protein SA (p40) (34/67 kDa laminin-binding| protein) (Fragment) Length = 264 Score = 27.7 bits (60), Expect = 6.9 Identities = 21/65 (32%), Positives = 26/65 (40%) Frame = +1 Query: 52 EASPLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAPRDSWDSGILSCLGRND 231 +AS + AP A P++D A PV AAPA AP W + ND Sbjct: 202 DASKVAAPAAAPAAFPSEDWGSVDAPAAPV--APAAAAPAAAAPSQDWSTDDWGGAATND 259 Query: 232 DFCSS 246 SS Sbjct: 260 WAVSS 264
>APA_MYCTU (Q50906) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (Immunogenic protein MPT32) (Antigen MPT-32) (45-kDa glycoprotein) (FAP-B) Length = 325 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/57 (33%), Positives = 22/57 (38%) Frame = +1 Query: 16 PLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAPR 186 P+ GAA E PL+AP PPA PA P GE P P+ Sbjct: 270 PVDKGAAKALAESIRPLVAP------PPAPAPAPAEPAPAPAPAGEVAPTPTTPTPQ 320
>APA_MYCBO (O30620) Alanine and proline-rich secreted protein apa precursor| (Fibronectin attachment protein) (45/47 kDa antigen) (FAP-B) Length = 325 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/57 (33%), Positives = 22/57 (38%) Frame = +1 Query: 16 PLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAPR 186 P+ GAA E PL+AP PPA PA P GE P P+ Sbjct: 270 PVDKGAAKALAESIRPLVAP------PPAPAPAPAEPAPAPAPAGEVAPTPTTPTPQ 320
>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082| Length = 721 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = +1 Query: 67 LAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAP 183 +APP + A A+G P P AAPAG P Sbjct: 387 IAPPTTDNASAMTPIAPMVANGPPASPAPPAAAPAGPLP 425
>GLU2B_MOUSE (O08795) Glucosidase 2 beta subunit precursor (Glucosidase II beta| subunit) (Protein kinase C substrate, 60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein) Length = 521 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 6/37 (16%) Frame = +1 Query: 37 DEHHEEASPLLAPPA------DEKLPPAQDPAKGCAD 129 +E EEA P L PP DEK+PP + + D Sbjct: 325 EEEEEEAPPPLQPPQPPSPTEDEKMPPYDEETQAIID 361
>NEUM_BOVIN (P06836) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (Calmodulin-binding protein P-57) Length = 239 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Frame = +1 Query: 13 PPLAMGAADEHHEEASPLLAPPADEKLPPA--QDPAKGCADGVPVLMGEPVAAPAGDAPR 186 P GA D E+A+P P++EK A + K D P E APA + P+ Sbjct: 110 PKKGEGAPDAATEQAAPQAPAPSEEKAGSAETESATKASTDNSPSSKAED--APAKEEPK 167 Query: 187 DS 192 + Sbjct: 168 QA 169
>ALK_MOUSE (P97793) ALK tyrosine kinase receptor precursor (EC 2.7.10.1)| (Anaplastic lymphoma kinase) (CD246 antigen) Length = 1621 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 6/70 (8%) Frame = +1 Query: 13 PPLAMGAADEHHEEAS------PLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAG 174 PPL + HEEAS L AP K PP G G AG Sbjct: 1426 PPLLVSPQPAKHEEASAAPQPAALTAPGPSVKKPPGAGAGAGAGAG------------AG 1473 Query: 175 DAPRDSWDSG 204 PR + D G Sbjct: 1474 PVPRGAADRG 1483
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Frame = +1 Query: 16 PLAMGAADEHHEEASPLLAPPADEKLPPA--QDPAKGCADGVPVLMGEPVAA--PAGDAP 183 P +A E EEA+ +P ++ PA + K ++ V V + +P + P G+ Sbjct: 1664 PEPASSAPEKAEEAAEAPSPAGEKPAEPAPVSEETKLVSEPVSVPVEQPRQSDVPPGEDS 1723 Query: 184 RDSWDSGILS 213 RDS DS L+ Sbjct: 1724 RDSQDSAALA 1733
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 8/71 (11%) Frame = +1 Query: 4 HHHPPLAMGAADEHHEEASPLLAPPADEK------LPPAQDPAKGC--ADGVPVLMGEPV 159 HH PP A H +A +PP + LP D C P+ + PV Sbjct: 1053 HHEPPYIPPAVCIGHRDAPRASSPPRHTQFDPFPFLPDTSDAEHQCQSPQHEPLQLPAPV 1112 Query: 160 AAPAGDAPRDS 192 DAPR S Sbjct: 1113 CIGYRDAPRAS 1123
>PFTA_RAT (Q04631) Protein farnesyltransferase/geranylgeranyltransferase type| I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alpha subunit) (Ras proteins prenyltransferase alpha) (FTase-alpha) (Type I protein geranyl-geranyltransfer Length = 377 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/47 (36%), Positives = 20/47 (42%) Frame = +1 Query: 73 PPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAPRDSWDSGILS 213 PP PPAQ P + E +AA AG+A D G LS Sbjct: 22 PPPPPPPPPAQQPQE-----------EEMAAEAGEAAASPMDDGFLS 57
>PFTA_MOUSE (Q61239) Protein farnesyltransferase/geranylgeranyltransferase type| I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alpha subunit) (Ras proteins prenyltransferase alpha) (FTase-alpha) (Type I protein geranyl-geranyltransf Length = 377 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/47 (36%), Positives = 20/47 (42%) Frame = +1 Query: 73 PPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAPRDSWDSGILS 213 PP PPAQ P + E +AA AG+A D G LS Sbjct: 22 PPPPPPPPPAQQPQE-----------EEMAAEAGEAAASPMDDGFLS 57
>WASF4_HUMAN (Q8IV90) Wiskott-Aldrich syndrome protein family member 4| (WASP-family protein member 4) Length = 625 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/57 (29%), Positives = 22/57 (38%) Frame = +1 Query: 13 PPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAP 183 PP+ G+ +SP P D PP P A P L P++ P AP Sbjct: 465 PPIGFGSPGTPPPPSSPSFPPHPDFAAPPPLPPPP--AADYPTLPPPPLSQPTRGAP 519
>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2386 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 8/48 (16%) Frame = +1 Query: 94 PPAQDPAKGCADGVPVLMGEPVAAPAGDAP--------RDSWDSGILS 213 PPA P ADG P G+P A A P R+ W G+++ Sbjct: 2070 PPAPPPPPPPADGGPRGAGDPGGAGASSGPGAPAEPRVREVWPRGLIT 2117
>TYK2_HUMAN (P29597) Non-receptor tyrosine-protein kinase TYK2 (EC 2.7.10.2)| Length = 1187 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 7/52 (13%) Frame = -3 Query: 332 VPGAAASLSTLLPYSTHGATL-------PRRQTSRSLLQKSSLRPRQERIPE 198 +PG A SLST + GATL SRS +K RQ R+PE Sbjct: 784 LPGGANSLSTAMDKWGFGATLLEICFDGEAPLQSRSPSEKEHFYQRQHRLPE 835
>PGCB_MOUSE (Q61361) Brevican core protein precursor| Length = 883 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +1 Query: 73 PPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGDAPRDSWDSG 204 PPA+ LPP + A G + GE + PR+S ++G Sbjct: 517 PPAETLLPPREWSATSTPGGAREVGGETGSPELSGVPRESEEAG 560
>UL17_HHV11 (P10201) Protein UL17| Length = 703 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = +1 Query: 19 LAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVLMGEPVAAPAGD 177 L+MG + PL P A PA P G +D P+ E + AP GD Sbjct: 196 LSMGLGESASPRPQPLARPHAGA---PADPPIVGASDP-PISPEEQLTAPGGD 244 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.138 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,015,223 Number of Sequences: 219361 Number of extensions: 826622 Number of successful extensions: 3685 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 3484 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3669 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)