ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart37h11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550206.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1134 Score = 252 bits (127), Expect = 7e-64 Identities = 245/283 (86%), Gaps = 6/283 (2%) Strand = Plus / Plus Query: 112 gccaagggctgcgccgacggggtccccgtcctcatgggcgagccggtcgccgcccccgcc 171 |||||| |||||||||| || ||||||||| | |||||||||||| ||| || ||||| Sbjct: 271 gccaagtgctgcgccgatggagtccccgtcgttatgggcgagccgctcggggcacccgc- 329 Query: 172 ggtgacgcgccacgggacagctgggactcggggatcctctcctgcctcggccgcaacgac 231 || |||| ||||| |||||| |||||||| | |||||||||||||||||||||||| Sbjct: 330 ----ac-cgccgcgggagagctggaactcgggggtgctctcctgcctcggccgcaacgac 384 Query: 232 gacttctgcagcagcgacctcgaagtctgtcttcttggaagtgtagcaccatgtgtgctg 291 || ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| Sbjct: 385 gagttctgcagcagcgacgtcgaagtgtgtcttcttggaagcatagcaccatgtgtgctg 444 Query: 292 tatggcagcaatgttgagaggcttgcagcagcaccagggacttttgccaacagttgcttg 351 ||||| || |||||||||||| ||||||| |||||| |||||||| ||||| |||||| Sbjct: 445 tatggtagtaatgttgagaggtttgcagccagaccaggaacttttgcaaacagctgcttg 504 Query: 352 ccttacactggtctctatatgcttgggaactctctctttgggt 394 ||||||||||| ||||||||||||||||| ||||||| |||| Sbjct: 505 ccttacactggcctctatatgcttgggaatgctctcttcgggt 547
>dbj|AK072658.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134D11, full insert sequence Length = 1134 Score = 252 bits (127), Expect = 7e-64 Identities = 245/283 (86%), Gaps = 6/283 (2%) Strand = Plus / Plus Query: 112 gccaagggctgcgccgacggggtccccgtcctcatgggcgagccggtcgccgcccccgcc 171 |||||| |||||||||| || ||||||||| | |||||||||||| ||| || ||||| Sbjct: 271 gccaagtgctgcgccgatggagtccccgtcgttatgggcgagccgctcggggcacccgc- 329 Query: 172 ggtgacgcgccacgggacagctgggactcggggatcctctcctgcctcggccgcaacgac 231 || |||| ||||| |||||| |||||||| | |||||||||||||||||||||||| Sbjct: 330 ----ac-cgccgcgggagagctggaactcgggggtgctctcctgcctcggccgcaacgac 384 Query: 232 gacttctgcagcagcgacctcgaagtctgtcttcttggaagtgtagcaccatgtgtgctg 291 || ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| Sbjct: 385 gagttctgcagcagcgacgtcgaagtgtgtcttcttggaagcatagcaccatgtgtgctg 444 Query: 292 tatggcagcaatgttgagaggcttgcagcagcaccagggacttttgccaacagttgcttg 351 ||||| || |||||||||||| ||||||| |||||| |||||||| ||||| |||||| Sbjct: 445 tatggtagtaatgttgagaggtttgcagccagaccaggaacttttgcaaacagctgcttg 504 Query: 352 ccttacactggtctctatatgcttgggaactctctctttgggt 394 ||||||||||| ||||||||||||||||| ||||||| |||| Sbjct: 505 ccttacactggcctctatatgcttgggaatgctctcttcgggt 547
>gb|AY104312.1| Zea mays PCO074362 mRNA sequence Length = 2610 Score = 244 bits (123), Expect = 2e-61 Identities = 189/211 (89%) Strand = Plus / Plus Query: 184 cgggacagctgggactcggggatcctctcctgcctcggccgcaacgacgacttctgcagc 243 ||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1771 cgggagagctggaactccgggatcctctcctgcctcggccgcaacgacgagttctgcagc 1830 Query: 244 agcgacctcgaagtctgtcttcttggaagtgtagcaccatgtgtgctgtatggcagcaat 303 |||||| ||||||| ||||||||||||| ||||||||||||||||| ||||| |||||| Sbjct: 1831 agcgacgtcgaagtgtgtcttcttggaacggtagcaccatgtgtgctctatggtagcaat 1890 Query: 304 gttgagaggcttgcagcagcaccagggacttttgccaacagttgcttgccttacactggt 363 |||||||||||||| || | || ||| || ||||| ||||| || |||||||||||||| Sbjct: 1891 gttgagaggcttgctgctggacaaggcacatttgcaaacagctgtttgccttacactggg 1950 Query: 364 ctctatatgcttgggaactctctctttgggt 394 || ||| |||||||||||||||||||||||| Sbjct: 1951 ctgtatttgcttgggaactctctctttgggt 1981 Score = 42.1 bits (21), Expect = 1.3 Identities = 42/49 (85%) Strand = Plus / Plus Query: 18 tctcgccatgggcgccgccgacgagcaccacgaggaggcaagccccctc 66 ||||||||||||||||| || | | ||||||||||| | ||||||||| Sbjct: 1584 tctcgccatgggcgccggcgccaacaaccacgaggagtcgagccccctc 1632
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 149 bits (75), Expect = 8e-33 Identities = 120/135 (88%) Strand = Plus / Plus Query: 260 gtcttcttggaagtgtagcaccatgtgtgctgtatggcagcaatgttgagaggcttgcag 319 ||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||| Sbjct: 3045202 gtcttcttggaagcatagcaccatgtgtgctgtatggtagtaatgttgagaggtttgcag 3045261 Query: 320 cagcaccagggacttttgccaacagttgcttgccttacactggtctctatatgcttggga 379 | |||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| Sbjct: 3045262 ccagaccaggaacttttgcaaacagctgcttgccttacactggcctctatatgcttggga 3045321 Query: 380 actctctctttgggt 394 | ||||||| |||| Sbjct: 3045322 atgctctcttcgggt 3045336 Score = 107 bits (54), Expect = 3e-20 Identities = 124/146 (84%), Gaps = 6/146 (4%) Strand = Plus / Plus Query: 112 gccaagggctgcgccgacggggtccccgtcctcatgggcgagccggtcgccgcccccgcc 171 |||||| |||||||||| || ||||||||| | |||||||||||| ||| || ||||| Sbjct: 3043757 gccaagtgctgcgccgatggagtccccgtcgttatgggcgagccgctcggggcacccgc- 3043815 Query: 172 ggtgacgcgccacgggacagctgggactcggggatcctctcctgcctcggccgcaacgac 231 || |||| ||||| |||||| |||||||| | |||||||||||||||||||||||| Sbjct: 3043816 ----ac-cgccgcgggagagctggaactcgggggtgctctcctgcctcggccgcaacgac 3043870 Query: 232 gacttctgcagcagcgacctcgaagt 257 || ||||||||||||||| ||||||| Sbjct: 3043871 gagttctgcagcagcgacgtcgaagt 3043896 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tcgccatgggcgccgccgac 39 |||||||||||||||||||| Sbjct: 33201435 tcgccatgggcgccgccgac 33201416
>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0011G08 Length = 139490 Score = 149 bits (75), Expect = 8e-33 Identities = 120/135 (88%) Strand = Plus / Plus Query: 260 gtcttcttggaagtgtagcaccatgtgtgctgtatggcagcaatgttgagaggcttgcag 319 ||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||| Sbjct: 126719 gtcttcttggaagcatagcaccatgtgtgctgtatggtagtaatgttgagaggtttgcag 126778 Query: 320 cagcaccagggacttttgccaacagttgcttgccttacactggtctctatatgcttggga 379 | |||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| Sbjct: 126779 ccagaccaggaacttttgcaaacagctgcttgccttacactggcctctatatgcttggga 126838 Query: 380 actctctctttgggt 394 | ||||||| |||| Sbjct: 126839 atgctctcttcgggt 126853 Score = 107 bits (54), Expect = 3e-20 Identities = 124/146 (84%), Gaps = 6/146 (4%) Strand = Plus / Plus Query: 112 gccaagggctgcgccgacggggtccccgtcctcatgggcgagccggtcgccgcccccgcc 171 |||||| |||||||||| || ||||||||| | |||||||||||| ||| || ||||| Sbjct: 125274 gccaagtgctgcgccgatggagtccccgtcgttatgggcgagccgctcggggcacccgc- 125332 Query: 172 ggtgacgcgccacgggacagctgggactcggggatcctctcctgcctcggccgcaacgac 231 || |||| ||||| |||||| |||||||| | |||||||||||||||||||||||| Sbjct: 125333 ----ac-cgccgcgggagagctggaactcgggggtgctctcctgcctcggccgcaacgac 125387 Query: 232 gacttctgcagcagcgacctcgaagt 257 || ||||||||||||||| ||||||| Sbjct: 125388 gagttctgcagcagcgacgtcgaagt 125413
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0433F09 Length = 150150 Score = 149 bits (75), Expect = 8e-33 Identities = 120/135 (88%) Strand = Plus / Plus Query: 260 gtcttcttggaagtgtagcaccatgtgtgctgtatggcagcaatgttgagaggcttgcag 319 ||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||| Sbjct: 13242 gtcttcttggaagcatagcaccatgtgtgctgtatggtagtaatgttgagaggtttgcag 13301 Query: 320 cagcaccagggacttttgccaacagttgcttgccttacactggtctctatatgcttggga 379 | |||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| Sbjct: 13302 ccagaccaggaacttttgcaaacagctgcttgccttacactggcctctatatgcttggga 13361 Query: 380 actctctctttgggt 394 | ||||||| |||| Sbjct: 13362 atgctctcttcgggt 13376 Score = 107 bits (54), Expect = 3e-20 Identities = 124/146 (84%), Gaps = 6/146 (4%) Strand = Plus / Plus Query: 112 gccaagggctgcgccgacggggtccccgtcctcatgggcgagccggtcgccgcccccgcc 171 |||||| |||||||||| || ||||||||| | |||||||||||| ||| || ||||| Sbjct: 11797 gccaagtgctgcgccgatggagtccccgtcgttatgggcgagccgctcggggcacccgc- 11855 Query: 172 ggtgacgcgccacgggacagctgggactcggggatcctctcctgcctcggccgcaacgac 231 || |||| ||||| |||||| |||||||| | |||||||||||||||||||||||| Sbjct: 11856 ----ac-cgccgcgggagagctggaactcgggggtgctctcctgcctcggccgcaacgac 11910 Query: 232 gacttctgcagcagcgacctcgaagt 257 || ||||||||||||||| ||||||| Sbjct: 11911 gagttctgcagcagcgacgtcgaagt 11936
>gb|BT017175.1| Zea mays clone EL01N0369B02.c mRNA sequence Length = 764 Score = 101 bits (51), Expect = 2e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 292 tatggcagcaatgttgagaggcttgcagcagcaccagggacttttgccaacagttgcttg 351 ||||| |||||||||||||||||||| || | || ||| || ||||| ||||| || ||| Sbjct: 12 tatggtagcaatgttgagaggcttgctgctggacaaggcacatttgcaaacagctgtttg 71 Query: 352 ccttacactggtctctatatgcttgggaactctctctttgggt 394 ||||||||||| || ||| |||||||||||||||||||||||| Sbjct: 72 ccttacactgggctgtatttgcttgggaactctctctttgggt 114
>gb|AY367058.1| Pisum sativum cultivar Alaska SAT5 mRNA, complete cds Length = 1257 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 233 acttctgcagcagcgacctcgaagtctgtcttcttggaagtgtagcaccatgtgtgctgt 292 |||| ||||||||||| |||||||| ||||||||||| ||||| || || |||||||||| Sbjct: 378 acttttgcagcagcgatctcgaagtttgtcttcttgggagtgtggctccttgtgtgctgt 437 Query: 293 atggcagcaatgttgagaggcttg 316 |||| |||||||||||||| |||| Sbjct: 438 atggaagcaatgttgagagacttg 461
>ref|NM_129267.2| Arabidopsis thaliana unknown protein AT2G37110 mRNA, complete cds Length = 1128 Score = 69.9 bits (35), Expect = 6e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 238 tgcagcagcgacctcgaagtctgtcttcttggaagtgtagcaccatgtgtgctgtatgg 296 ||||||||||| |||||||| ||||||||||||||||| || || |||||| ||||||| Sbjct: 400 tgcagcagcgatctcgaagtttgtcttcttggaagtgtggctccttgtgtgttgtatgg 458
>gb|BT024466.1| Arabidopsis thaliana At2g37110 mRNA, complete cds Length = 729 Score = 69.9 bits (35), Expect = 6e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 238 tgcagcagcgacctcgaagtctgtcttcttggaagtgtagcaccatgtgtgctgtatgg 296 ||||||||||| |||||||| ||||||||||||||||| || || |||||| ||||||| Sbjct: 268 tgcagcagcgatctcgaagtttgtcttcttggaagtgtggctccttgtgtgttgtatgg 326
>gb|AY084973.1| Arabidopsis thaliana clone 123128 mRNA, complete sequence Length = 1070 Score = 69.9 bits (35), Expect = 6e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 238 tgcagcagcgacctcgaagtctgtcttcttggaagtgtagcaccatgtgtgctgtatgg 296 ||||||||||| |||||||| ||||||||||||||||| || || |||||| ||||||| Sbjct: 400 tgcagcagcgatctcgaagtttgtcttcttggaagtgtggctccttgtgtgttgtatgg 458
>gb|AC124963.32| Medicago truncatula clone mth2-24f5, complete sequence Length = 159515 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 260 gtcttcttggaagtgtagcaccatgtgtgctgtatggcagcaat 303 |||||||||| ||||| || || |||||||||||||| |||||| Sbjct: 99040 gtcttcttgggagtgtggctccttgtgtgctgtatggaagcaat 99083
>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 Length = 1913118 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 15 gcctctcgccatgggcgccgccgacg 40 ||||| |||||||||||||||||||| Sbjct: 679256 gcctcccgccatgggcgccgccgacg 679281
>emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete chromosome; segment 2/12 Length = 306650 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 atgggcgagccggtcgccgcc 165 ||||||||||||||||||||| Sbjct: 24508 atgggcgagccggtcgccgcc 24528
>gb|AC006260.4| Arabidopsis thaliana chromosome 2 clone T2N18 map ve018, complete sequence Length = 80736 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 260 gtcttcttggaagtgtagcaccatgtgtgctgtatgg 296 |||||||||||||||| || || |||||| ||||||| Sbjct: 45776 gtcttcttggaagtgtggctccttgtgtgttgtatgg 45740
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 28 ggcgccgccgacgagcaccacgagg 52 |||||||||| |||||||||||||| Sbjct: 1101545 ggcgccgccgccgagcaccacgagg 1101521
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 cgcctctcgccatgggcgccgccg 37 ||||||| |||||||||||||||| Sbjct: 1204694 cgcctctggccatgggcgccgccg 1204717
>gb|AC119269.9| Mus musculus chromosome 5, clone RP24-324B22, complete sequence Length = 172282 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 tgtgctgtatggcagcaatg 304 |||||||||||||||||||| Sbjct: 120076 tgtgctgtatggcagcaatg 120095
>ref|XM_470681.1| Oryza sativa (japonica cultivar-group), mRNA Length = 933 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 tcctctcctgcctcggccgc 225 |||||||||||||||||||| Sbjct: 411 tcctctcctgcctcggccgc 392
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 agaagctccccccggcgcag 105 |||||||||||||||||||| Sbjct: 1553553 agaagctccccccggcgcag 1553572
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 tcctctcctgcctcggccgc 225 |||||||||||||||||||| Sbjct: 14517437 tcctctcctgcctcggccgc 14517418
>emb|AJ698944.1| Equus caballus csf1R gene, smf gene, tigd14 gene, slc26a2 gene, ORF1 and cGMP-alpha gene Length = 142625 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 ccatgtgtgctgtatggcag 299 |||||||||||||||||||| Sbjct: 52872 ccatgtgtgctgtatggcag 52853
>emb|AJ488769.2|AFR488769 Actinoplanes firuliensis partial friulimicin biosynthetic gene cluster Length = 15457 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 gcctcggccgcaacgacgacttct 238 ||||||||||| |||||||||||| Sbjct: 3207 gcctcggccgcgacgacgacttct 3230
>emb|AL611922.7| Human DNA sequence from clone RP11-633N4 on chromosome 9, complete sequence Length = 176612 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 gcagcagcaccagggacttt 335 |||||||||||||||||||| Sbjct: 12002 gcagcagcaccagggacttt 11983
>gb|AF522240.1| Caloglossa postiae isolate MK1061 28S ribosomal RNA gene, partial sequence Length = 1631 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 cgaggaggcaagccccctct 67 |||||||||||||||||||| Sbjct: 1236 cgaggaggcaagccccctct 1217
>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete sequence Length = 147130 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 tcctctcctgcctcggccgc 225 |||||||||||||||||||| Sbjct: 140270 tcctctcctgcctcggccgc 140289
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gggcgagccggtcgccgccc 166 |||||||||||||||||||| Sbjct: 71194 gggcgagccggtcgccgccc 71213
>emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01, complete sequence Length = 143157 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 cgccgcccccgccggtgacgcgcc 182 ||||||| |||||||||||||||| Sbjct: 126363 cgccgccgccgccggtgacgcgcc 126386
>gb|AF319543.1| Streptomyces venezuelae putative acetyl-CoA acetyltransferase and cystathionine beta-synthase (CbsSV) genes, complete cds Length = 6927 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gggcgagccggtcgccgccc 166 |||||||||||||||||||| Sbjct: 5713 gggcgagccggtcgccgccc 5732
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 tgggcgagccggtcgccgcc 165 |||||||||||||||||||| Sbjct: 1557156 tgggcgagccggtcgccgcc 1557137
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cccgccaagggctgcgccga 128 |||||||||||||||||||| Sbjct: 2184286 cccgccaagggctgcgccga 2184305
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 cgccgcccccgccggtgacgcgcc 182 ||||||| |||||||||||||||| Sbjct: 30147387 cgccgccgccgccggtgacgcgcc 30147410 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 cgccgcccccgccggtgacgcgcc 182 ||||||| |||||||||||||||| Sbjct: 30086684 cgccgccgccgccggtgacgcgcc 30086707
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 cgccgcccccgccggtgacgcgcc 182 ||||||| |||||||||||||||| Sbjct: 15872773 cgccgccgccgccggtgacgcgcc 15872750
>gb|AC092135.4| Homo sapiens chromosome 16 clone RP11-274A11, complete sequence Length = 185193 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gatcctctcctgcctcggcc 223 |||||||||||||||||||| Sbjct: 113027 gatcctctcctgcctcggcc 113008
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 tcctctcctgcctcggccgc 225 |||||||||||||||||||| Sbjct: 14512412 tcctctcctgcctcggccgc 14512393
>gb|AC092139.5| Homo sapiens chromosome 16 clone RP11-391L3, complete sequence Length = 191731 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gatcctctcctgcctcggcc 223 |||||||||||||||||||| Sbjct: 2455 gatcctctcctgcctcggcc 2436
>gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete sequence Length = 135594 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 tcctctcctgcctcggccgc 225 |||||||||||||||||||| Sbjct: 23944 tcctctcctgcctcggccgc 23963
>gb|AY117439.1| Streptomyces carzinostaticus subsp. neocarzinostaticus neocarzinostatin biosynthetic locus, complete sequence Length = 92294 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 gcgccgccgacgagcaccac 48 |||||||||||||||||||| Sbjct: 4198 gcgccgccgacgagcaccac 4217
>dbj|AP003368.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1100D10 Length = 152997 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tcgccatgggcgccgccgac 39 |||||||||||||||||||| Sbjct: 138345 tcgccatgggcgccgccgac 138326
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 cggtcgccgcccccgccggt 174 |||||||||||||||||||| Sbjct: 8010115 cggtcgccgcccccgccggt 8010096
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 cgccgccgacgagcaccacg 49 |||||||||||||||||||| Sbjct: 3163415 cgccgccgacgagcaccacg 3163434
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 cgacgagcaccacgaggagg 55 |||||||||||||||||||| Sbjct: 1369581 cgacgagcaccacgaggagg 1369600
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1081_G10 Length = 107955 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 cgccgcccccgccggtgacgcgcc 182 ||||||| |||||||||||||||| Sbjct: 35899 cgccgccgccgccggtgacgcgcc 35876
>dbj|AK120076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013010M02, full insert sequence Length = 1270 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 cgccgcccccgccggtgacgcgcc 182 ||||||| |||||||||||||||| Sbjct: 135 cgccgccgccgccggtgacgcgcc 112
>dbj|AK109278.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-B02, full insert sequence Length = 549 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tcgccatgggcgccgccgac 39 |||||||||||||||||||| Sbjct: 86 tcgccatgggcgccgccgac 105
>dbj|AK104973.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-B03, full insert sequence Length = 994 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 cgccgcccccgccggtgacgcgcc 182 ||||||| |||||||||||||||| Sbjct: 386 cgccgccgccgccggtgacgcgcc 363
>dbj|AK072558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131I21, full insert sequence Length = 916 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 cgccgcccccgccggtgacgcgcc 182 ||||||| |||||||||||||||| Sbjct: 399 cgccgccgccgccggtgacgcgcc 376
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 gaggcttgcagcagcaccag 328 |||||||||||||||||||| Sbjct: 3213280 gaggcttgcagcagcaccag 3213261
>dbj|AK058642.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-E05, full insert sequence Length = 1353 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 cgccgcccccgccggtgacgcgcc 182 ||||||| |||||||||||||||| Sbjct: 108 cgccgccgccgccggtgacgcgcc 85
>gb|AY104688.1| Zea mays PCO061445 mRNA sequence Length = 991 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cccgccggtgacgcgccacg 185 |||||||||||||||||||| Sbjct: 142 cccgccggtgacgcgccacg 123
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 221 gccgcaacgacgacttctgcagcagcga 248 |||||| ||||| ||||||||||||||| Sbjct: 206296 gccgcagcgacggcttctgcagcagcga 206323
>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12, complete sequence Length = 186142 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 cgccgcccccgccggtgacgcgcc 182 ||||||| |||||||||||||||| Sbjct: 43795 cgccgccgccgccggtgacgcgcc 43818
>dbj|AB029754.1| Paralichthys olivaceus mRNA for chymotrypsinogen 2, complete cds Length = 875 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 ggggatcctctcctgcctcg 220 |||||||||||||||||||| Sbjct: 3 ggggatcctctcctgcctcg 22 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,985,943 Number of Sequences: 3902068 Number of extensions: 3985943 Number of successful extensions: 81874 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80414 Number of HSP's gapped (non-prelim): 1460 length of query: 394 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 372 effective length of database: 17,147,199,772 effective search space: 6378758315184 effective search space used: 6378758315184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
