ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart37h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_550206.1| Oryza sativa (japonica cultivar-group), mRNA 252 7e-64
2dbj|AK072658.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 7e-64
3gb|AY104312.1| Zea mays PCO074362 mRNA sequence 244 2e-61
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 149 8e-33
5dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic D... 149 8e-33
6dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic D... 149 8e-33
7gb|BT017175.1| Zea mays clone EL01N0369B02.c mRNA sequence 101 2e-18
8gb|AY367058.1| Pisum sativum cultivar Alaska SAT5 mRNA, complete... 96 1e-16
9ref|NM_129267.2| Arabidopsis thaliana unknown protein AT2G37110 ... 70 6e-09
10gb|BT024466.1| Arabidopsis thaliana At2g37110 mRNA, complete cds 70 6e-09
11gb|AY084973.1| Arabidopsis thaliana clone 123128 mRNA, complete ... 70 6e-09
12gb|AC124963.32| Medicago truncatula clone mth2-24f5, complete se... 48 0.022
13dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 44 0.34
14emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete ch... 42 1.3
15gb|AC006260.4| Arabidopsis thaliana chromosome 2 clone T2N18 map... 42 1.3
16gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.3
17gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 5.3
18gb|AC119269.9| Mus musculus chromosome 5, clone RP24-324B22, com... 40 5.3
19ref|XM_470681.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.3
20gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 5.3
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.3
22emb|AJ698944.1| Equus caballus csf1R gene, smf gene, tigd14 gene... 40 5.3
23emb|AJ488769.2|AFR488769 Actinoplanes firuliensis partial friuli... 40 5.3
24emb|AL611922.7| Human DNA sequence from clone RP11-633N4 on chro... 40 5.3
25gb|AF522240.1| Caloglossa postiae isolate MK1061 28S ribosomal R... 40 5.3
26gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genom... 40 5.3
27emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete ... 40 5.3
28emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4,... 40 5.3
29gb|AF319543.1| Streptomyces venezuelae putative acetyl-CoA acety... 40 5.3
30dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.3
31gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.3
32dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
33dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
34gb|AC092135.4| Homo sapiens chromosome 16 clone RP11-274A11, com... 40 5.3
35dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
36gb|AC092139.5| Homo sapiens chromosome 16 clone RP11-391L3, comp... 40 5.3
37gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genom... 40 5.3
38gb|AY117439.1| Streptomyces carzinostaticus subsp. neocarzinosta... 40 5.3
39dbj|AP003368.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
40dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.3
41gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.3
42dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.3
43dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
44dbj|AK120076.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
45dbj|AK109278.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
46dbj|AK104973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
47dbj|AK072558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
48emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.3
49dbj|AK058642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
50gb|AY104688.1| Zea mays PCO061445 mRNA sequence 40 5.3
51gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 5.3
52emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4,... 40 5.3
53dbj|AB029754.1| Paralichthys olivaceus mRNA for chymotrypsinogen... 40 5.3

>ref|XM_550206.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1134

 Score =  252 bits (127), Expect = 7e-64
 Identities = 245/283 (86%), Gaps = 6/283 (2%)
 Strand = Plus / Plus

                                                                       
Query: 112 gccaagggctgcgccgacggggtccccgtcctcatgggcgagccggtcgccgcccccgcc 171
           |||||| |||||||||| || ||||||||| | |||||||||||| |||  || ||||| 
Sbjct: 271 gccaagtgctgcgccgatggagtccccgtcgttatgggcgagccgctcggggcacccgc- 329

                                                                       
Query: 172 ggtgacgcgccacgggacagctgggactcggggatcctctcctgcctcggccgcaacgac 231
               || |||| ||||| |||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 330 ----ac-cgccgcgggagagctggaactcgggggtgctctcctgcctcggccgcaacgac 384

                                                                       
Query: 232 gacttctgcagcagcgacctcgaagtctgtcttcttggaagtgtagcaccatgtgtgctg 291
           || ||||||||||||||| ||||||| ||||||||||||||  |||||||||||||||||
Sbjct: 385 gagttctgcagcagcgacgtcgaagtgtgtcttcttggaagcatagcaccatgtgtgctg 444

                                                                       
Query: 292 tatggcagcaatgttgagaggcttgcagcagcaccagggacttttgccaacagttgcttg 351
           ||||| || |||||||||||| |||||||   |||||| |||||||| ||||| ||||||
Sbjct: 445 tatggtagtaatgttgagaggtttgcagccagaccaggaacttttgcaaacagctgcttg 504

                                                      
Query: 352 ccttacactggtctctatatgcttgggaactctctctttgggt 394
           ||||||||||| |||||||||||||||||  ||||||| ||||
Sbjct: 505 ccttacactggcctctatatgcttgggaatgctctcttcgggt 547



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>dbj|AK072658.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134D11, full
           insert sequence
          Length = 1134

 Score =  252 bits (127), Expect = 7e-64
 Identities = 245/283 (86%), Gaps = 6/283 (2%)
 Strand = Plus / Plus

                                                                       
Query: 112 gccaagggctgcgccgacggggtccccgtcctcatgggcgagccggtcgccgcccccgcc 171
           |||||| |||||||||| || ||||||||| | |||||||||||| |||  || ||||| 
Sbjct: 271 gccaagtgctgcgccgatggagtccccgtcgttatgggcgagccgctcggggcacccgc- 329

                                                                       
Query: 172 ggtgacgcgccacgggacagctgggactcggggatcctctcctgcctcggccgcaacgac 231
               || |||| ||||| |||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 330 ----ac-cgccgcgggagagctggaactcgggggtgctctcctgcctcggccgcaacgac 384

                                                                       
Query: 232 gacttctgcagcagcgacctcgaagtctgtcttcttggaagtgtagcaccatgtgtgctg 291
           || ||||||||||||||| ||||||| ||||||||||||||  |||||||||||||||||
Sbjct: 385 gagttctgcagcagcgacgtcgaagtgtgtcttcttggaagcatagcaccatgtgtgctg 444

                                                                       
Query: 292 tatggcagcaatgttgagaggcttgcagcagcaccagggacttttgccaacagttgcttg 351
           ||||| || |||||||||||| |||||||   |||||| |||||||| ||||| ||||||
Sbjct: 445 tatggtagtaatgttgagaggtttgcagccagaccaggaacttttgcaaacagctgcttg 504

                                                      
Query: 352 ccttacactggtctctatatgcttgggaactctctctttgggt 394
           ||||||||||| |||||||||||||||||  ||||||| ||||
Sbjct: 505 ccttacactggcctctatatgcttgggaatgctctcttcgggt 547



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>gb|AY104312.1| Zea mays PCO074362 mRNA sequence
          Length = 2610

 Score =  244 bits (123), Expect = 2e-61
 Identities = 189/211 (89%)
 Strand = Plus / Plus

                                                                        
Query: 184  cgggacagctgggactcggggatcctctcctgcctcggccgcaacgacgacttctgcagc 243
            ||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1771 cgggagagctggaactccgggatcctctcctgcctcggccgcaacgacgagttctgcagc 1830

                                                                        
Query: 244  agcgacctcgaagtctgtcttcttggaagtgtagcaccatgtgtgctgtatggcagcaat 303
            |||||| ||||||| |||||||||||||  ||||||||||||||||| ||||| ||||||
Sbjct: 1831 agcgacgtcgaagtgtgtcttcttggaacggtagcaccatgtgtgctctatggtagcaat 1890

                                                                        
Query: 304  gttgagaggcttgcagcagcaccagggacttttgccaacagttgcttgccttacactggt 363
            |||||||||||||| || | || ||| || ||||| ||||| || |||||||||||||| 
Sbjct: 1891 gttgagaggcttgctgctggacaaggcacatttgcaaacagctgtttgccttacactggg 1950

                                           
Query: 364  ctctatatgcttgggaactctctctttgggt 394
            || ||| ||||||||||||||||||||||||
Sbjct: 1951 ctgtatttgcttgggaactctctctttgggt 1981



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                             
Query: 18   tctcgccatgggcgccgccgacgagcaccacgaggaggcaagccccctc 66
            ||||||||||||||||| || | |  ||||||||||| | |||||||||
Sbjct: 1584 tctcgccatgggcgccggcgccaacaaccacgaggagtcgagccccctc 1632



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  149 bits (75), Expect = 8e-33
 Identities = 120/135 (88%)
 Strand = Plus / Plus

                                                                           
Query: 260     gtcttcttggaagtgtagcaccatgtgtgctgtatggcagcaatgttgagaggcttgcag 319
               |||||||||||||  |||||||||||||||||||||| || |||||||||||| ||||||
Sbjct: 3045202 gtcttcttggaagcatagcaccatgtgtgctgtatggtagtaatgttgagaggtttgcag 3045261

                                                                           
Query: 320     cagcaccagggacttttgccaacagttgcttgccttacactggtctctatatgcttggga 379
               |   |||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 3045262 ccagaccaggaacttttgcaaacagctgcttgccttacactggcctctatatgcttggga 3045321

                              
Query: 380     actctctctttgggt 394
               |  ||||||| ||||
Sbjct: 3045322 atgctctcttcgggt 3045336



 Score =  107 bits (54), Expect = 3e-20
 Identities = 124/146 (84%), Gaps = 6/146 (4%)
 Strand = Plus / Plus

                                                                           
Query: 112     gccaagggctgcgccgacggggtccccgtcctcatgggcgagccggtcgccgcccccgcc 171
               |||||| |||||||||| || ||||||||| | |||||||||||| |||  || ||||| 
Sbjct: 3043757 gccaagtgctgcgccgatggagtccccgtcgttatgggcgagccgctcggggcacccgc- 3043815

                                                                           
Query: 172     ggtgacgcgccacgggacagctgggactcggggatcctctcctgcctcggccgcaacgac 231
                   || |||| ||||| |||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 3043816 ----ac-cgccgcgggagagctggaactcgggggtgctctcctgcctcggccgcaacgac 3043870

                                         
Query: 232     gacttctgcagcagcgacctcgaagt 257
               || ||||||||||||||| |||||||
Sbjct: 3043871 gagttctgcagcagcgacgtcgaagt 3043896



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 20       tcgccatgggcgccgccgac 39
                ||||||||||||||||||||
Sbjct: 33201435 tcgccatgggcgccgccgac 33201416



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>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0011G08
          Length = 139490

 Score =  149 bits (75), Expect = 8e-33
 Identities = 120/135 (88%)
 Strand = Plus / Plus

                                                                          
Query: 260    gtcttcttggaagtgtagcaccatgtgtgctgtatggcagcaatgttgagaggcttgcag 319
              |||||||||||||  |||||||||||||||||||||| || |||||||||||| ||||||
Sbjct: 126719 gtcttcttggaagcatagcaccatgtgtgctgtatggtagtaatgttgagaggtttgcag 126778

                                                                          
Query: 320    cagcaccagggacttttgccaacagttgcttgccttacactggtctctatatgcttggga 379
              |   |||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 126779 ccagaccaggaacttttgcaaacagctgcttgccttacactggcctctatatgcttggga 126838

                             
Query: 380    actctctctttgggt 394
              |  ||||||| ||||
Sbjct: 126839 atgctctcttcgggt 126853



 Score =  107 bits (54), Expect = 3e-20
 Identities = 124/146 (84%), Gaps = 6/146 (4%)
 Strand = Plus / Plus

                                                                          
Query: 112    gccaagggctgcgccgacggggtccccgtcctcatgggcgagccggtcgccgcccccgcc 171
              |||||| |||||||||| || ||||||||| | |||||||||||| |||  || ||||| 
Sbjct: 125274 gccaagtgctgcgccgatggagtccccgtcgttatgggcgagccgctcggggcacccgc- 125332

                                                                          
Query: 172    ggtgacgcgccacgggacagctgggactcggggatcctctcctgcctcggccgcaacgac 231
                  || |||| ||||| |||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 125333 ----ac-cgccgcgggagagctggaactcgggggtgctctcctgcctcggccgcaacgac 125387

                                        
Query: 232    gacttctgcagcagcgacctcgaagt 257
              || ||||||||||||||| |||||||
Sbjct: 125388 gagttctgcagcagcgacgtcgaagt 125413



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>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0433F09
          Length = 150150

 Score =  149 bits (75), Expect = 8e-33
 Identities = 120/135 (88%)
 Strand = Plus / Plus

                                                                         
Query: 260   gtcttcttggaagtgtagcaccatgtgtgctgtatggcagcaatgttgagaggcttgcag 319
             |||||||||||||  |||||||||||||||||||||| || |||||||||||| ||||||
Sbjct: 13242 gtcttcttggaagcatagcaccatgtgtgctgtatggtagtaatgttgagaggtttgcag 13301

                                                                         
Query: 320   cagcaccagggacttttgccaacagttgcttgccttacactggtctctatatgcttggga 379
             |   |||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 13302 ccagaccaggaacttttgcaaacagctgcttgccttacactggcctctatatgcttggga 13361

                            
Query: 380   actctctctttgggt 394
             |  ||||||| ||||
Sbjct: 13362 atgctctcttcgggt 13376



 Score =  107 bits (54), Expect = 3e-20
 Identities = 124/146 (84%), Gaps = 6/146 (4%)
 Strand = Plus / Plus

                                                                         
Query: 112   gccaagggctgcgccgacggggtccccgtcctcatgggcgagccggtcgccgcccccgcc 171
             |||||| |||||||||| || ||||||||| | |||||||||||| |||  || ||||| 
Sbjct: 11797 gccaagtgctgcgccgatggagtccccgtcgttatgggcgagccgctcggggcacccgc- 11855

                                                                         
Query: 172   ggtgacgcgccacgggacagctgggactcggggatcctctcctgcctcggccgcaacgac 231
                 || |||| ||||| |||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 11856 ----ac-cgccgcgggagagctggaactcgggggtgctctcctgcctcggccgcaacgac 11910

                                       
Query: 232   gacttctgcagcagcgacctcgaagt 257
             || ||||||||||||||| |||||||
Sbjct: 11911 gagttctgcagcagcgacgtcgaagt 11936



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>gb|BT017175.1| Zea mays clone EL01N0369B02.c mRNA sequence
          Length = 764

 Score =  101 bits (51), Expect = 2e-18
 Identities = 90/103 (87%)
 Strand = Plus / Plus

                                                                       
Query: 292 tatggcagcaatgttgagaggcttgcagcagcaccagggacttttgccaacagttgcttg 351
           ||||| |||||||||||||||||||| || | || ||| || ||||| ||||| || |||
Sbjct: 12  tatggtagcaatgttgagaggcttgctgctggacaaggcacatttgcaaacagctgtttg 71

                                                      
Query: 352 ccttacactggtctctatatgcttgggaactctctctttgggt 394
           ||||||||||| || ||| ||||||||||||||||||||||||
Sbjct: 72  ccttacactgggctgtatttgcttgggaactctctctttgggt 114



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>gb|AY367058.1| Pisum sativum cultivar Alaska SAT5 mRNA, complete cds
          Length = 1257

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                       
Query: 233 acttctgcagcagcgacctcgaagtctgtcttcttggaagtgtagcaccatgtgtgctgt 292
           |||| ||||||||||| |||||||| ||||||||||| ||||| || || ||||||||||
Sbjct: 378 acttttgcagcagcgatctcgaagtttgtcttcttgggagtgtggctccttgtgtgctgt 437

                                   
Query: 293 atggcagcaatgttgagaggcttg 316
           |||| |||||||||||||| ||||
Sbjct: 438 atggaagcaatgttgagagacttg 461



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>ref|NM_129267.2| Arabidopsis thaliana unknown protein AT2G37110 mRNA, complete cds
          Length = 1128

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                      
Query: 238 tgcagcagcgacctcgaagtctgtcttcttggaagtgtagcaccatgtgtgctgtatgg 296
           ||||||||||| |||||||| ||||||||||||||||| || || |||||| |||||||
Sbjct: 400 tgcagcagcgatctcgaagtttgtcttcttggaagtgtggctccttgtgtgttgtatgg 458



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>gb|BT024466.1| Arabidopsis thaliana At2g37110 mRNA, complete cds
          Length = 729

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                      
Query: 238 tgcagcagcgacctcgaagtctgtcttcttggaagtgtagcaccatgtgtgctgtatgg 296
           ||||||||||| |||||||| ||||||||||||||||| || || |||||| |||||||
Sbjct: 268 tgcagcagcgatctcgaagtttgtcttcttggaagtgtggctccttgtgtgttgtatgg 326



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>gb|AY084973.1| Arabidopsis thaliana clone 123128 mRNA, complete sequence
          Length = 1070

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                      
Query: 238 tgcagcagcgacctcgaagtctgtcttcttggaagtgtagcaccatgtgtgctgtatgg 296
           ||||||||||| |||||||| ||||||||||||||||| || || |||||| |||||||
Sbjct: 400 tgcagcagcgatctcgaagtttgtcttcttggaagtgtggctccttgtgtgttgtatgg 458



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>gb|AC124963.32| Medicago truncatula clone mth2-24f5, complete sequence
          Length = 159515

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 260   gtcttcttggaagtgtagcaccatgtgtgctgtatggcagcaat 303
             |||||||||| ||||| || || |||||||||||||| ||||||
Sbjct: 99040 gtcttcttgggagtgtggctccttgtgtgctgtatggaagcaat 99083



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>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009
          Length = 1913118

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 15     gcctctcgccatgggcgccgccgacg 40
              ||||| ||||||||||||||||||||
Sbjct: 679256 gcctcccgccatgggcgccgccgacg 679281



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>emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete chromosome; segment 2/12
          Length = 306650

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 145   atgggcgagccggtcgccgcc 165
             |||||||||||||||||||||
Sbjct: 24508 atgggcgagccggtcgccgcc 24528



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>gb|AC006260.4| Arabidopsis thaliana chromosome 2 clone T2N18 map ve018, complete
             sequence
          Length = 80736

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 260   gtcttcttggaagtgtagcaccatgtgtgctgtatgg 296
             |||||||||||||||| || || |||||| |||||||
Sbjct: 45776 gtcttcttggaagtgtggctccttgtgtgttgtatgg 45740



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 28      ggcgccgccgacgagcaccacgagg 52
               |||||||||| ||||||||||||||
Sbjct: 1101545 ggcgccgccgccgagcaccacgagg 1101521



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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 14      cgcctctcgccatgggcgccgccg 37
               ||||||| ||||||||||||||||
Sbjct: 1204694 cgcctctggccatgggcgccgccg 1204717



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>gb|AC119269.9| Mus musculus chromosome 5, clone RP24-324B22, complete sequence
          Length = 172282

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    tgtgctgtatggcagcaatg 304
              ||||||||||||||||||||
Sbjct: 120076 tgtgctgtatggcagcaatg 120095



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>ref|XM_470681.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 933

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 206 tcctctcctgcctcggccgc 225
           ||||||||||||||||||||
Sbjct: 411 tcctctcctgcctcggccgc 392



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 86      agaagctccccccggcgcag 105
               ||||||||||||||||||||
Sbjct: 1553553 agaagctccccccggcgcag 1553572



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 206      tcctctcctgcctcggccgc 225
                ||||||||||||||||||||
Sbjct: 14517437 tcctctcctgcctcggccgc 14517418



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>emb|AJ698944.1| Equus caballus csf1R gene, smf gene, tigd14 gene, slc26a2 gene, ORF1
             and cGMP-alpha gene
          Length = 142625

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   ccatgtgtgctgtatggcag 299
             ||||||||||||||||||||
Sbjct: 52872 ccatgtgtgctgtatggcag 52853



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>emb|AJ488769.2|AFR488769 Actinoplanes firuliensis partial friulimicin biosynthetic gene
            cluster
          Length = 15457

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 215  gcctcggccgcaacgacgacttct 238
            ||||||||||| ||||||||||||
Sbjct: 3207 gcctcggccgcgacgacgacttct 3230



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>emb|AL611922.7| Human DNA sequence from clone RP11-633N4 on chromosome 9, complete
             sequence
          Length = 176612

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   gcagcagcaccagggacttt 335
             ||||||||||||||||||||
Sbjct: 12002 gcagcagcaccagggacttt 11983



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>gb|AF522240.1| Caloglossa postiae isolate MK1061 28S ribosomal RNA gene, partial
            sequence
          Length = 1631

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   cgaggaggcaagccccctct 67
            ||||||||||||||||||||
Sbjct: 1236 cgaggaggcaagccccctct 1217



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>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete
              sequence
          Length = 147130

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    tcctctcctgcctcggccgc 225
              ||||||||||||||||||||
Sbjct: 140270 tcctctcctgcctcggccgc 140289



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>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   gggcgagccggtcgccgccc 166
             ||||||||||||||||||||
Sbjct: 71194 gggcgagccggtcgccgccc 71213



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>emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01,
              complete sequence
          Length = 143157

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 159    cgccgcccccgccggtgacgcgcc 182
              ||||||| ||||||||||||||||
Sbjct: 126363 cgccgccgccgccggtgacgcgcc 126386



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>gb|AF319543.1| Streptomyces venezuelae putative acetyl-CoA acetyltransferase and
            cystathionine beta-synthase (CbsSV) genes, complete cds
          Length = 6927

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 147  gggcgagccggtcgccgccc 166
            ||||||||||||||||||||
Sbjct: 5713 gggcgagccggtcgccgccc 5732



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 146     tgggcgagccggtcgccgcc 165
               ||||||||||||||||||||
Sbjct: 1557156 tgggcgagccggtcgccgcc 1557137



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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 109     cccgccaagggctgcgccga 128
               ||||||||||||||||||||
Sbjct: 2184286 cccgccaagggctgcgccga 2184305



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 159      cgccgcccccgccggtgacgcgcc 182
                ||||||| ||||||||||||||||
Sbjct: 30147387 cgccgccgccgccggtgacgcgcc 30147410



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 159      cgccgcccccgccggtgacgcgcc 182
                ||||||| ||||||||||||||||
Sbjct: 30086684 cgccgccgccgccggtgacgcgcc 30086707



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 159      cgccgcccccgccggtgacgcgcc 182
                ||||||| ||||||||||||||||
Sbjct: 15872773 cgccgccgccgccggtgacgcgcc 15872750



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>gb|AC092135.4| Homo sapiens chromosome 16 clone RP11-274A11, complete sequence
          Length = 185193

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    gatcctctcctgcctcggcc 223
              ||||||||||||||||||||
Sbjct: 113027 gatcctctcctgcctcggcc 113008



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 206      tcctctcctgcctcggccgc 225
                ||||||||||||||||||||
Sbjct: 14512412 tcctctcctgcctcggccgc 14512393



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>gb|AC092139.5| Homo sapiens chromosome 16 clone RP11-391L3, complete sequence
          Length = 191731

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  gatcctctcctgcctcggcc 223
            ||||||||||||||||||||
Sbjct: 2455 gatcctctcctgcctcggcc 2436



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>gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete
             sequence
          Length = 135594

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tcctctcctgcctcggccgc 225
             ||||||||||||||||||||
Sbjct: 23944 tcctctcctgcctcggccgc 23963



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>gb|AY117439.1| Streptomyces carzinostaticus subsp. neocarzinostaticus
            neocarzinostatin biosynthetic locus, complete sequence
          Length = 92294

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   gcgccgccgacgagcaccac 48
            ||||||||||||||||||||
Sbjct: 4198 gcgccgccgacgagcaccac 4217



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>dbj|AP003368.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1100D10
          Length = 152997

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     tcgccatgggcgccgccgac 39
              ||||||||||||||||||||
Sbjct: 138345 tcgccatgggcgccgccgac 138326



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 155     cggtcgccgcccccgccggt 174
               ||||||||||||||||||||
Sbjct: 8010115 cggtcgccgcccccgccggt 8010096



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 30      cgccgccgacgagcaccacg 49
               ||||||||||||||||||||
Sbjct: 3163415 cgccgccgacgagcaccacg 3163434



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 36      cgacgagcaccacgaggagg 55
               ||||||||||||||||||||
Sbjct: 1369581 cgacgagcaccacgaggagg 1369600



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>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1081_G10
          Length = 107955

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 159   cgccgcccccgccggtgacgcgcc 182
             ||||||| ||||||||||||||||
Sbjct: 35899 cgccgccgccgccggtgacgcgcc 35876



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>dbj|AK120076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013010M02, full
           insert sequence
          Length = 1270

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 159 cgccgcccccgccggtgacgcgcc 182
           ||||||| ||||||||||||||||
Sbjct: 135 cgccgccgccgccggtgacgcgcc 112



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>dbj|AK109278.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-B02, full
           insert sequence
          Length = 549

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 20  tcgccatgggcgccgccgac 39
           ||||||||||||||||||||
Sbjct: 86  tcgccatgggcgccgccgac 105



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>dbj|AK104973.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-B03, full
           insert sequence
          Length = 994

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 159 cgccgcccccgccggtgacgcgcc 182
           ||||||| ||||||||||||||||
Sbjct: 386 cgccgccgccgccggtgacgcgcc 363



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>dbj|AK072558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131I21, full
           insert sequence
          Length = 916

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 159 cgccgcccccgccggtgacgcgcc 182
           ||||||| ||||||||||||||||
Sbjct: 399 cgccgccgccgccggtgacgcgcc 376



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 309     gaggcttgcagcagcaccag 328
               ||||||||||||||||||||
Sbjct: 3213280 gaggcttgcagcagcaccag 3213261



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>dbj|AK058642.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-E05, full
           insert sequence
          Length = 1353

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 159 cgccgcccccgccggtgacgcgcc 182
           ||||||| ||||||||||||||||
Sbjct: 108 cgccgccgccgccggtgacgcgcc 85



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>gb|AY104688.1| Zea mays PCO061445 mRNA sequence
          Length = 991

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 cccgccggtgacgcgccacg 185
           ||||||||||||||||||||
Sbjct: 142 cccgccggtgacgcgccacg 123



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 221    gccgcaacgacgacttctgcagcagcga 248
              |||||| ||||| |||||||||||||||
Sbjct: 206296 gccgcagcgacggcttctgcagcagcga 206323



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>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12,
             complete sequence
          Length = 186142

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 159   cgccgcccccgccggtgacgcgcc 182
             ||||||| ||||||||||||||||
Sbjct: 43795 cgccgccgccgccggtgacgcgcc 43818



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>dbj|AB029754.1| Paralichthys olivaceus mRNA for chymotrypsinogen 2, complete cds
          Length = 875

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 ggggatcctctcctgcctcg 220
           ||||||||||||||||||||
Sbjct: 3   ggggatcctctcctgcctcg 22


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,985,943
Number of Sequences: 3902068
Number of extensions: 3985943
Number of successful extensions: 81874
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80414
Number of HSP's gapped (non-prelim): 1460
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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