ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart37h09 |
|---|---|
| Clone Library Name | barley_pub |
>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb| chitinase-1) (TBC-1) Length = 314 Score = 158 bits (399), Expect = 9e-39 Identities = 78/135 (57%), Positives = 99/135 (73%) Frame = +2 Query: 107 IAMTNGYLFREYIGAQFTGVRFSDVPVNTGVSFHYILAFAIDYTPVAQKPTPTPTNGAFS 286 + +T+ +FREYIG+QF V+FSDVP+N V FH+ILAFAIDYT +PTPTNG F Sbjct: 21 LPLTSALVFREYIGSQFNDVKFSDVPINPDVDFHFILAFAIDYT---SGSSPTPTNGNFK 77 Query: 287 AFWDTASLSRADVAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASLSR 466 FWDT +LS + VAA+K H NV V + LGGDSV V F+P+SV SWV NAV+SL+R Sbjct: 78 PFWDTNNLSPSQVAAVKRTHSNVKVSLSLGGDSVGG-KNVFFSPSSVSSWVENAVSSLTR 136 Query: 467 LINEYGLDGVDVDYE 511 +I +Y LDG+D+DYE Sbjct: 137 IIKQYHLDGIDIDYE 151
>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)| Length = 275 Score = 153 bits (386), Expect = 3e-37 Identities = 78/128 (60%), Positives = 96/128 (75%) Frame = +2 Query: 128 LFREYIGAQFTGVRFSDVPVNTGVSFHYILAFAIDYTPVAQKPTPTPTNGAFSAFWDTAS 307 LFREYIGAQF V+FSDVP+N V FH+ILAFAIDYT +PTPTNG F+ FWDT + Sbjct: 2 LFREYIGAQFNDVKFSDVPINPNVDFHFILAFAIDYT---SGSSPTPTNGNFNPFWDTNN 58 Query: 308 LSRADVAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASLSRLINEYGL 487 LS + VAAIK + NV V V LGG+SV +V F P+SV SWV NAV+SL+++I +Y L Sbjct: 59 LSPSQVAAIKRTYNNVKVSVSLGGNSVGG-ERVFFNPSSVSSWVDNAVSSLTKIIKQYHL 117 Query: 488 DGVDVDYE 511 DG+D+DYE Sbjct: 118 DGIDIDYE 125
>RUAP_SOYBN (P39657) RuBisCO-associated protein| Length = 283 Score = 54.7 bits (130), Expect = 1e-07 Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 4/115 (3%) Frame = +2 Query: 179 VPVNTGVSFHYILAFAIDYTPVAQKPTPTPTNGAFSAFWDTASLSRADVAAIKAAHP--- 349 +P N F L+ A DY TNG F +WDT ++ + K + Sbjct: 22 IPENI-TEFQVTLSLARDYDG------NNSTNGKFIPYWDTEKVTPEVIKKFKKKYEPTA 74 Query: 350 -NVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASLSRLINEYGLDGVDVDYE 511 V V+V +G + Q + NS ++WV+ A ASL +I Y LDG+DV YE Sbjct: 75 LRVKVLVSIGNKNKQFPFTIGSDSNS-EAWVSEATASLKSIIKTYNLDGIDVSYE 128
>CHIX_STROI (Q05638) Exochitinase 1 precursor (EC 3.2.1.14)| Length = 597 Score = 40.0 bits (92), Expect = 0.004 Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 28/173 (16%) Frame = +2 Query: 77 LTPRPAPARSIAMTNGY------LFREYIGAQFTGVRFSDVPVNTGVSF-HYILAFAIDY 235 LTP A A +A NG A TG +D+P + V + H A Y Sbjct: 221 LTPDTAYAFQVAAVNGAGESAKSATVTATTAPGTGGGSADLPPHALVGYLHASFANGSGY 280 Query: 236 TPVAQKPTPTPTNGAFSAFWDTASLSRADV--------------------AAIKAAHP-N 352 T +A P AF + S++ D+ AAIKA Sbjct: 281 TRLADVPDSWDVIDL--AFGEPTSVTSGDIRFDRCPATECPNVESDAEFKAAIKAKQAAG 338 Query: 353 VSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASLSRLINEYGLDGVDVDYE 511 V++ +GG + Q + + A ++ V+S+S++I+EYGLDG+D+D+E Sbjct: 339 KKVLISIGGQNGQVQLTTTAARDTF-------VSSVSKIIDEYGLDGLDIDFE 384
>CHIB_SERMA (P11797) Chitinase B precursor (EC 3.2.1.14)| Length = 499 Score = 39.3 bits (90), Expect = 0.006 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 10/90 (11%) Frame = +2 Query: 272 NGAFSAFWDTAS--LSRADVA----AIKAAHPNVSVMVGLGGDSVQDIVKVSFAP--NSV 427 N WD A+ DV A+KA +P++ +M +GG + + VS A N+V Sbjct: 55 NSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAV 114 Query: 428 DSWVANA--VASLSRLINEYGLDGVDVDYE 511 + A S R++ +YG DGVD+D+E Sbjct: 115 KTPAARTKFAQSCVRIMKDYGFDGVDIDWE 144
>SFRIP_HUMAN (Q99590) SFRS2-interacting protein (Splicing factor,| arginine/serine-rich 2-interacting protein) (SC35-interacting protein 1) (CTD-associated SR protein 11) (Splicing regulatory protein 129) (SRrp129) (NY-REN-40 antigen) Length = 1148 Score = 37.0 bits (84), Expect = 0.032 Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 16/125 (12%) Frame = +2 Query: 59 SGVPLI-----------LTPRPAPARSIAMTNGYLFREYIGAQFTGVRFSDVPVNTGVSF 205 +GVPL+ L P P P N YI +Q G + +P ++ VS Sbjct: 944 TGVPLMQVATPTSVSQGLPPPPPPPPPSQQVN------YIASQPDGKQLQGIPSSSHVSN 997 Query: 206 HYILAFAIDYTPVAQKPTPTPTN-----GAFSAFWDTASLSRADVAAIKAAHPNVSVMVG 370 + TPV PT P N G S ++S S+A AA+K A VSV V Sbjct: 998 NMS-------TPVLPAPTAAPGNTGMVQGPSSGNTSSSSHSKASNAAVKLAESKVSVAVE 1050 Query: 371 LGGDS 385 DS Sbjct: 1051 ASADS 1055
>CHIT3_DROME (Q9W5U2) Probable chitinase 3 (EC 3.2.1.14)| Length = 458 Score = 35.0 bits (79), Expect = 0.12 Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 3/158 (1%) Frame = +2 Query: 47 YQQQSGVPLILTPRPAPARSIA-MTNGYLFREYIGAQFTGVRFSDVPVNTGVSFHYILAF 223 Y + VP PR + + I TN +R+ IG RF+ +NT + H I F Sbjct: 159 YPTEKPVP---KPRDSHYKVICYFTNWAWYRKGIG------RFTPDDINTELCTHVIYGF 209 Query: 224 AI-DYTPVAQKPTPTPTNGAFSAFWDTASLSRADVAAIKAAHPNVSVMVGLGGDSVQD-I 397 A+ DY+ + + ++ D + V ++K+ VS+ +G DS D Sbjct: 210 AVLDYSELVLR--------THDSWADVENNFYTRVTSLKSKGIKVSLALGGWNDSQGDKY 261 Query: 398 VKVSFAPNSVDSWVANAVASLSRLINEYGLDGVDVDYE 511 ++ +P + +V +A+ I +YG +G+D+D+E Sbjct: 262 SRLVRSPMARSRFVRHAL----EFIEKYGFEGLDLDWE 295
>CHIT_CAEEL (Q11174) Probable endochitinase (EC 3.2.1.14)| Length = 617 Score = 34.7 bits (78), Expect = 0.16 Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 10/148 (6%) Frame = +2 Query: 98 ARSIAM---TNGYLFREYIG--AQFTGVRFSDVPVN--TGVSFHYILAFA---IDYTPVA 247 +RS+A TN Y+ Y AQ+ R VP + G+ H + AF DYT A Sbjct: 41 SRSVARSEPTNSYIRPCYFTNWAQYRQGRAKFVPEDYTPGLCTHILFAFGWMNADYTVRA 100 Query: 248 QKPTPTPTNGAFSAFWDTASLSRADVAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSV 427 P P + W + R V +K + ++ GG S + A +S Sbjct: 101 YDPADLPND------WAGEGMYRR-VNKLKVTDTQLKTLLSFGGWSFGTALFQGMAASSA 153 Query: 428 DSWVANAVASLSRLINEYGLDGVDVDYE 511 V + S + +G DG+D+D+E Sbjct: 154 SRKVF--IDSAITFVRTWGFDGIDIDWE 179
>Y2598_MYCBO (P65010) Hypothetical protein Mb2598c| Length = 341 Score = 32.7 bits (73), Expect = 0.60 Identities = 21/55 (38%), Positives = 27/55 (49%) Frame = -1 Query: 429 STELGAKETLTMSCTLSPPRPTMTLTFGCAALMAATSARDRLAVSQNALNAPLVG 265 S +LG L SC L+ RP+ T T G A A A+ RL + L P+VG Sbjct: 62 SDQLGG---LCSSCVLTIERPSDTNTAGLAEFARAEGAKRRLIAELHELKLPIVG 113
>Y2568_MYCTU (P65009) Hypothetical protein Rv2568c/MT2644| Length = 341 Score = 32.7 bits (73), Expect = 0.60 Identities = 21/55 (38%), Positives = 27/55 (49%) Frame = -1 Query: 429 STELGAKETLTMSCTLSPPRPTMTLTFGCAALMAATSARDRLAVSQNALNAPLVG 265 S +LG L SC L+ RP+ T T G A A A+ RL + L P+VG Sbjct: 62 SDQLGG---LCSSCVLTIERPSDTNTAGLAEFARAEGAKRRLIAELHELKLPIVG 113
>RS15_YEAST (Q01855) 40S ribosomal protein S15 (S21) (YS21) (RP52) (RIG| protein) Length = 142 Score = 32.7 bits (73), Expect = 0.60 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Frame = +2 Query: 86 RPAPARSIAMTNGYLFREYIGAQ---FTGVRFSDVPVNTGVSFHYILAFAIDYTPV 244 +PAP R+ M N + E IG+ + G F+ V + + HY+ F+I YTPV Sbjct: 72 KPAPVRT-HMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPV 126
>CH47_DROME (Q23997) Chitinase-like protein DS47 precursor| Length = 452 Score = 31.6 bits (70), Expect = 1.3 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Frame = +2 Query: 323 VAAIKAAHPNVSVMVGLGGDSVQDIVK-VSFAPNSVDSWVANA------VASLSRLINEY 481 V +K +PNV +++ +GGD ++ K PN + + V ++ L+ Y Sbjct: 96 VTRLKRKYPNVKILLSVGGDKDIELDKDAKELPNKYLELLESPTGRTRFVNTVYSLVKTY 155 Query: 482 GLDGVDVDYE 511 G DG+DV ++ Sbjct: 156 GFDGLDVAWQ 165
>CHIT2_DROME (Q9W092) Probable chitinase 2 precursor (EC 3.2.1.14)| Length = 484 Score = 30.8 bits (68), Expect = 2.3 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = +2 Query: 323 VAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASLSRLINEYGLDGVDV 502 + +K +HP++ V + +GG + + N++ V +S I +Y DG+D+ Sbjct: 108 MTGLKRSHPHLKVSLAIGGWNEGSANYSTLVANNLLR--GRFVKQVSSFIRKYNFDGLDL 165 Query: 503 DYE 511 D+E Sbjct: 166 DWE 168
>RAI1_HUMAN (Q7Z5J4) Retinoic acid-induced protein 1| Length = 1906 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +2 Query: 239 PVAQKPTPTPTNGAFSAFWDTASLSRADVA 328 P P P PT AF F DT + S AD A Sbjct: 712 PTLGVPAPDPTTAAFDCFPDTTAASSADSA 741
>IDGF2_DROME (Q9V3D4) Chitinase-like protein Idgf2 precursor (Imaginal disk| growth factor protein 2) Length = 440 Score = 29.6 bits (65), Expect = 5.0 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 10/75 (13%) Frame = +2 Query: 317 ADVAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSVDSWV----------ANAVASLSR 466 ++V ++K +P++ V++ +GGD D P+ + ++ + S Sbjct: 85 SEVTSLKRKYPHLKVLLSVGGDHDID-------PDHPNKYIDLLEGEKVRQIGFIRSAYD 137 Query: 467 LINEYGLDGVDVDYE 511 L+ YG DG+D+ Y+ Sbjct: 138 LVKTYGFDGLDLAYQ 152
>MTRC_METKA (O32865) Tetrahydromethanopterin S-methyltransferase subunit C (EC| 2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit C) Length = 270 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/56 (26%), Positives = 28/56 (50%) Frame = +2 Query: 293 WDTASLSRADVAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASL 460 W ++ R + P++ M GLGG SV I+ + + N+V +W A + ++ Sbjct: 63 WGADAVRRVAGYGLGTGVPSIGFM-GLGGGSVAAILAAALSGNTVPAWAAAIIGTV 117
>ILVC_TREPR (Q8KTR6) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 328 Score = 29.6 bits (65), Expect = 5.0 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = +2 Query: 32 RSHCIYQQQSGVPLILTPRPAPARSIAMTNGYLFR 136 R+H + + SGV +++ RP P+ AM++G++ R Sbjct: 29 RAHAMNLRDSGVEVVIGLRPGPSFDAAMSDGFMPR 63
>CHIT1_HUMAN (Q13231) Chitotriosidase-1 precursor (EC 3.2.1.14) (Chitinase-1)| Length = 466 Score = 29.3 bits (64), Expect = 6.6 Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = +2 Query: 293 WDTASLSRADVAAIKAAHPNVSVMVGLGGDS--VQDIVKVSFAPNSVDSWVANAVASLSR 466 W+ +L + + +K +P + ++ +GG + Q + N+ ++V +A+ R Sbjct: 71 WNDETLYQ-EFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAI----R 125 Query: 467 LINEYGLDGVDVDYE 511 + +Y DG+D+D+E Sbjct: 126 FLRKYSFDGLDLDWE 140
>RS15D_ARATH (Q9FY64) 40S ribosomal protein S15-4| Length = 152 Score = 28.9 bits (63), Expect = 8.6 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +2 Query: 86 RPAPARSIAMTNGYLFREYIGA---QFTGVRFSDVPVNTGVSFHYILAFAIDYTPV 244 +P P R+ + N + E IG+ + G F+ V + + HY+ F+I Y PV Sbjct: 79 KPEPVRT-HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 133
>RS151_ARATH (Q08112) 40S ribosomal protein S15-1| Length = 152 Score = 28.9 bits (63), Expect = 8.6 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +2 Query: 86 RPAPARSIAMTNGYLFREYIGA---QFTGVRFSDVPVNTGVSFHYILAFAIDYTPV 244 +P P R+ + N + E IG+ + G F+ V + + HY+ F+I Y PV Sbjct: 79 KPEPVRT-HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 133
>RS15_ELAOL (Q945U1) 40S ribosomal protein S15| Length = 153 Score = 28.9 bits (63), Expect = 8.6 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +2 Query: 86 RPAPARSIAMTNGYLFREYIGA---QFTGVRFSDVPVNTGVSFHYILAFAIDYTPV 244 +P P R+ + N + E IG+ + G F+ V + + HY+ F+I Y PV Sbjct: 80 KPEPVRT-HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 134
>RS15_PICMA (O65059) 40S ribosomal protein S15| Length = 151 Score = 28.9 bits (63), Expect = 8.6 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +2 Query: 86 RPAPARSIAMTNGYLFREYIGA---QFTGVRFSDVPVNTGVSFHYILAFAIDYTPV 244 +P P R+ + N + E IG+ + G F+ V + + HY+ F+I Y PV Sbjct: 78 KPEPVRT-HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 132
>CHIT_MANSE (P36362) Endochitinase precursor (EC 3.2.1.14)| Length = 554 Score = 28.9 bits (63), Expect = 8.6 Identities = 17/61 (27%), Positives = 34/61 (55%) Frame = +2 Query: 329 AIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASLSRLINEYGLDGVDVDY 508 +++++HP+V MV +GG + K S + S + + S+ + +Y DG+D+D+ Sbjct: 88 SLRSSHPSVKFMVAVGG-WAEGSSKYSHMV-AQKSTRMSFIRSVVSFLKKYDFDGLDLDW 145 Query: 509 E 511 E Sbjct: 146 E 146 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.130 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,684,187 Number of Sequences: 219361 Number of extensions: 879242 Number of successful extensions: 2434 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2381 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2426 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
