Clone Name | bart37h08 |
---|---|
Clone Library Name | barley_pub |
>ACCO3_LYCES (P10967) 1-aminocyclopropane-1-carboxylate oxidase homolog (Protein| E8) Length = 363 Score = 105 bits (263), Expect = 5e-23 Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 8/152 (5%) Frame = +2 Query: 47 RATMASDRLSALRAFDDTKAGVKGLVDAGATAIPAIFHHPPDSFTPSTLTTDVAVPVVDL 226 R + D++S L+AFDDTKAGVKGLVD+G T +P IF PP T PV+DL Sbjct: 5 RVEESYDKMSELKAFDDTKAGVKGLVDSGITKVPQIFVLPPKD-RAKKCETHFVFPVIDL 63 Query: 227 S------CSRSDXXXXXXXXXXXXXFFLLANHGVPEAAMSGMLAAVRRFNEEPTEAKAPY 388 + FF + NHG+P + + L R+F E+ E K Y Sbjct: 64 QGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQY 123 Query: 389 YTRDAARRVRYSCNADLFQTLV--GKWRDTIY 478 YTRD A++V Y+ N DL+++ V WRDTI+ Sbjct: 124 YTRDTAKKVVYTSNLDLYKSSVPAASWRDTIF 155
>DV4H_CATRO (O04847) Desacetoxyvindoline 4-hydroxylase (EC 1.14.11.20)| Length = 401 Score = 92.4 bits (228), Expect = 6e-19 Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 11/155 (7%) Frame = +2 Query: 44 HRATMASDR-LSALRAFDDTKAGVKGLVDAGATAIPAIFHHPP---DSFTPSTLTTDVAV 211 H AT++ + L L+AFD+TKAGVKG+VD G T IP IF P D + +D+ + Sbjct: 32 HAATLSEEESLRELKAFDETKAGVKGIVDTGITKIPRIFIDQPKNLDRISVCRGKSDIKI 91 Query: 212 PVVDL------SCSRSDXXXXXXXXXXXXXFFLLANHGVPEAAMSGMLAAVRRFNEEPTE 373 PV++L S R + FF + NHG+P+ M M+ VR+F+E+ + Sbjct: 92 PVINLNGLSSNSEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQ 151 Query: 374 AKAPYYTRDA-ARRVRYSCNADLFQTLVGKWRDTI 475 K YY+RD + YS N L + WRDT+ Sbjct: 152 IKRQYYSRDRFNKNFLYSSNYVLIPGIACNWRDTM 186
>GAOX3_ARATH (Q39112) Gibberellin 20 oxidase 3 (EC 1.14.11.-) (Gibberellin C-20| oxidase 3) (GA 20-oxidase 3) Length = 380 Score = 40.4 bits (93), Expect = 0.003 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 19/125 (15%) Frame = +2 Query: 158 HHPPDSFT------PSTLTTDVAVPVVDL-------SCSRSDXXXXXXXXXXXXXFFLLA 298 HH P F PST + VP++DL SC S+ FFL+ Sbjct: 35 HHIPQQFVWPDHEKPSTDVQPLQVPLIDLAGFLSGDSCLASEATRLVSKAATKHGFFLIT 94 Query: 299 NHGVPEAAMSGMLAAVRRFNEEPTEAKAPYYTRDAARRVRYSCNADLFQTLVGK------ 460 NHGV E+ +S R + + KAP + A+R ++ ++ + VG+ Sbjct: 95 NHGVDESLLS------RAYLHMDSFFKAPACEKQKAQR-KWGESSGYASSFVGRFSSKLP 147 Query: 461 WRDTI 475 W++T+ Sbjct: 148 WKETL 152
>GAOX1_ARATH (Q39110) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20| oxidase 1) (GA 20-oxidase 1) (AtGA20ox) Length = 377 Score = 35.8 bits (81), Expect = 0.067 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 7/119 (5%) Frame = +2 Query: 167 PDSFTPSTLTTDVAVPVVDLS------CSRSDXXXXXXXXXXXXXFFLLANHGVPEAAMS 328 PD PS ++ VP++DL S D FFL+ NHG+ E +S Sbjct: 47 PDDEKPSINVLELDVPLIDLQNLLSDPSSTLDASRLISEACKKHGFFLVVNHGISEELIS 106 Query: 329 GMLAAVRRFNEEPTEAKAPYYTRDAARRVRYSCN-ADLFQTLVGKWRDTIYMDDADELA 502 RF + P K R + V Y+ + F T + W++T+ D+++ Sbjct: 107 DAHEYTSRFFDMPLSEK-QRVLRKSGESVGYASSFTGRFSTKL-PWKETLSFRFCDDMS 163
>G2OX2_PEA (Q9XHM5) Gibberellin 2-beta-dioxygenase 2 (EC 1.14.11.13)| (Gibberellin 2-beta-hydroxylase 2) (Gibberellin 2-oxidase 2) (GA 2-oxidase 2) Length = 345 Score = 33.5 bits (75), Expect = 0.33 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = +2 Query: 167 PDSFTPSTLTTDVAVPVVDLSCSRSDXXXXXXXXXXXXXFFLLANHGVPEAAMS 328 P S + T V +P +DLS RS FF + NH VP+ +S Sbjct: 6 PTSMIRTKKTKAVGIPTIDLSLERSQLSELVVKACEEYGFFKVVNHSVPKEVIS 59
>LDOX_PERFR (O04274) Leucoanthocyanidin dioxygenase (EC 1.14.11.19) (LDOX)| (Leucocyanidin oxygenase) (Leucoanthocyanidin hydroxylase) Length = 362 Score = 33.1 bits (74), Expect = 0.44 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +2 Query: 293 LANHGVPEAAMSGMLAAVRRFNEEPTEAKAPYYTRDAARRVR 418 L NHG+PE + + AA + F E P E K Y AA V+ Sbjct: 88 LINHGIPEELIDRVKAAGKEFFELPVEEKEAYANDQAAGNVQ 129
>GAOX2_ARATH (Q39111) Gibberellin 20 oxidase 2 (EC 1.14.11.-) (Gibberellin C-20| oxidase 2) (GA 20-oxidase 2) Length = 378 Score = 33.1 bits (74), Expect = 0.44 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Frame = +2 Query: 167 PDSFTPSTLTTDVAVPVVDLSCSRS--DXXXXXXXXXXXXXFFLLANHGVPEAAMSGMLA 340 PD PS ++ VP +DLS S + FFL+ NHGV E+ ++ Sbjct: 49 PDEEKPSIDIPELNVPFIDLSSQDSTLEAPRVIAEACTKHGFFLVVNHGVSESLIADAHR 108 Query: 341 AVRRFNEEPTEAKAPYYTRDAARRVRYSC 427 + F + P K + A R+ SC Sbjct: 109 LMESFFDMPLAGK-----QKAQRKPGESC 132
>MUC5A_HUMAN (P98088) Mucin-5AC (Mucin 5 subtype AC, tracheobronchial)| (Tracheobronchial mucin) (TBM) (Major airway glycoprotein) (Fragment) Length = 1233 Score = 32.7 bits (73), Expect = 0.57 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +3 Query: 63 PTASARSGPSTTPRPASRASSTPAP 137 PT S SGP TTP P S+T AP Sbjct: 136 PTTSTTSGPGTTPSPVPTTSTTSAP 160 Score = 32.7 bits (73), Expect = 0.57 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +3 Query: 63 PTASARSGPSTTPRPASRASSTPAP 137 PT S SGP TTP P S+T AP Sbjct: 48 PTTSTTSGPGTTPSPVPTTSTTSAP 72 Score = 31.6 bits (70), Expect = 1.3 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +3 Query: 63 PTASARSGPSTTPRPASRASSTP 131 PT S SGP TTP P S+TP Sbjct: 160 PTTSTTSGPGTTPSPVPTTSTTP 182 Score = 31.6 bits (70), Expect = 1.3 Identities = 14/24 (58%), Positives = 15/24 (62%) Frame = +3 Query: 66 TASARSGPSTTPRPASRASSTPAP 137 TAS SGP TTP P S+T AP Sbjct: 81 TASTTSGPGTTPSPVPTTSTTSAP 104 Score = 29.6 bits (65), Expect = 4.8 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +3 Query: 63 PTASARSGPSTTPRPASRASSTPAP 137 P S SGP TTP P S+T AP Sbjct: 24 PITSMPSGPGTTPSPVPTTSTTSAP 48
>GAOX1_ORYSA (P93771) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20| oxidase 1) (GA 20-oxidase 1) (Os20ox) Length = 372 Score = 31.6 bits (70), Expect = 1.3 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Frame = +2 Query: 128 AGATAIPAIFHHPPDSFTPSTLTTDVAVPVVDLSCS--RSDXXXXXXXXXXXXXFFLLAN 301 +G T IP+ F P + S ++ V ++D+ RS FFL+ N Sbjct: 19 SGQTEIPSQFIWPAEESPGSVAVEELEVALIDVGAGAERSSVVRQVGEACERHGFFLVVN 78 Query: 302 HGVPEAAMSGMLAAVRRFNEEPTEAKAPYYTRDAARRVRYSC 427 HG+ A + + F P K + A RR SC Sbjct: 79 HGIEAALLEEAHRCMDAFFTLPLGEK-----QRAQRRAGESC 115
>G2OX7_ARATH (Q9C6I4) Gibberellin 2-beta-dioxygenase 7 (EC 1.14.11.13)| (Gibberellin 2-beta-hydroxylase 7) (Gibberellin 2-oxidase 7) (GA 2-oxidase 7) Length = 336 Score = 30.8 bits (68), Expect = 2.2 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 7/74 (9%) Frame = +2 Query: 179 TPSTLTTDVAVPVVDLS-------CSRSDXXXXXXXXXXXXXFFLLANHGVPEAAMSGML 337 T + T+ + +PV+DLS R FF + NHG+P+ ML Sbjct: 30 TSTIQTSGIKLPVIDLSHLTSGEEVKRKRCVKQMVAAAKEWGFFQIVNHGIPKDVFEMML 89 Query: 338 AAVRRFNEEPTEAK 379 ++ ++P K Sbjct: 90 LEEKKLFDQPFSVK 103
>RIPT_TRIKI (P09989) Ribosome-inactivating protein alpha-trichosanthin| precursor (EC 3.2.2.22) (rRNA N-glycosidase) (Alpha-TCS) Length = 289 Score = 30.4 bits (67), Expect = 2.8 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +2 Query: 353 FNEEPTEAKAPYYTRDAARRVR--YSCNADLFQTLVGKWRDTI 475 FNE A Y +DA R+V YS N + QT GK R+ I Sbjct: 106 FNEASATEAAKYVFKDAMRKVTLPYSGNYERLQTAAGKIRENI 148
>FLS_CITUN (Q9ZWQ9) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23)| (EC 1.14.11.9) (FLS) (CitFLS) Length = 335 Score = 30.4 bits (67), Expect = 2.8 Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 5/117 (4%) Frame = +2 Query: 143 IPAIFHHPPDSFTPSTLTTDVA--VPVVDLSCSRSDXXXXXXXXXXXX-XFFLLANHGVP 313 IPA F P ST A +P +DL D F + NHG+P Sbjct: 19 IPAEFIRPEKEQPASTTYHGPAPEIPTIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIP 78 Query: 314 EAAMSGMLAAVRRFNEEPTEAKAPYYTRDAARRVRYSCNADLFQTLVGK--WRDTIY 478 + + A + F E P E K Y+R A + L + + GK W D ++ Sbjct: 79 SDLICKLQAVGKEFFELPQEEK-EVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLF 134
>FLS_MATIN (O04395) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23)| (EC 1.14.11.9) (FLS) (Fragment) Length = 291 Score = 30.0 bits (66), Expect = 3.7 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Frame = +2 Query: 209 VPVVDLSCSRSDXXXXXXXXXXXX-XFFLLANHGVPEAAMSGMLAAVRRFNEEPTEAKAP 385 VPVVDLSC + F + NHG+P + + R F E P EA+ Sbjct: 2 VPVVDLSCPDEELVARTVVKASEDWGVFQVVNHGIPTELIQRLQKVGREFFELP-EAEKR 60 Query: 386 YYTRDAARRVRYSCNADL 439 R+A Y +L Sbjct: 61 SCAREAGSVEGYGRRIEL 78
>LDOX_MAIZE (P41213) Leucoanthocyanidin dioxygenase (EC 1.14.11.19) (LDOX)| (Leucocyanidin oxygenase) (Leucoanthocyanidin hydroxylase) Length = 395 Score = 30.0 bits (66), Expect = 3.7 Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 20/125 (16%) Frame = +2 Query: 104 AGVKGLVDAGATAIPAIFHHPPDSFTPSTLTTDVA-----------VPVVDLSC------ 232 A V+ L +G +AIP + P D D+A +PVVD+S Sbjct: 12 ARVEALSLSGLSAIPPEYVRPADERAGLGDAFDLARTHANDHTAPRIPVVDISPFLDSSS 71 Query: 233 ---SRSDXXXXXXXXXXXXXFFLLANHGVPEAAMSGMLAAVRRFNEEPTEAKAPYYTRDA 403 R + +A HG+P M + AA F P + K Y A Sbjct: 72 QQQQRDECVEAVRAAAADWGVMHIAGHGIPAELMDRLRAAGTAFFALPVQDKEAYANDPA 131 Query: 404 ARRVR 418 A R++ Sbjct: 132 AGRLQ 136
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 30.0 bits (66), Expect = 3.7 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +3 Query: 36 ASFIERQWRPTASARSGPSTTPRPASRASSTPAP 137 ASF+E+ W ++S P+TT +S +SS +P Sbjct: 507 ASFVEQPWSSSSSRAIQPATTSASSSSSSSASSP 540
>GCNL2_MOUSE (Q9JHD2) General control of amino acid synthesis protein 5-like 2| (EC 2.3.1.48) (Histone acetyltransferase GCN5) (mmGCN5) Length = 830 Score = 30.0 bits (66), Expect = 3.7 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 54 QWRPTASARSGPSTTPRPASRASSTPAP 137 Q RP S P++TP P+ ++STPAP Sbjct: 15 QPRPLHSPAPAPTSTPAPSPASASTPAP 42
>STK39_MOUSE (Q9Z1W9) STE20/SPS1-related proline-alanine-rich protein kinase (EC| 2.7.11.1) (Ste-20-related kinase) (Serine/threonine-protein kinase 39) Length = 556 Score = 29.6 bits (65), Expect = 4.8 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +3 Query: 9 LHTECDRELASFIERQWRPTASARSGPSTTPRPASRASSTPAP 137 +H + ++ A A+A S P+ P PA AS+ PAP Sbjct: 9 VHVQLSQQAAPVTAAAATAPAAATSAPAPAPAPAPAASAAPAP 51
>PLXB1_HUMAN (O43157) Plexin-B1 precursor (Semaphorin receptor SEP)| Length = 2135 Score = 29.6 bits (65), Expect = 4.8 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +3 Query: 63 PTASARSGPSTTPRPASRASSTPAP 137 P AR GPS +P A +A +TPAP Sbjct: 682 PDPPARGGPSPSPPTAPKALATPAP 706
>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2| Length = 916 Score = 29.6 bits (65), Expect = 4.8 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +3 Query: 63 PTASARSGPSTTPRPASRASSTPA 134 P A A S PS+ PRPA A ++PA Sbjct: 213 PAARAPSSPSSAPRPARPAGASPA 236
>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2| Length = 902 Score = 29.6 bits (65), Expect = 4.8 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +3 Query: 63 PTASARSGPSTTPRPASRASSTPA 134 P A A S PS+ PRPA A ++PA Sbjct: 199 PAARAPSSPSSAPRPARPAGASPA 222
>G2OX1_PEA (Q9SQ80) Gibberellin 2-beta-dioxygenase 1 (EC 1.14.11.13)| (Gibberellin 2-beta-hydroxylase 1) (Gibberellin 2-oxidase 1) (GA 2-oxidase 1) (SLENDER protein) Length = 327 Score = 29.6 bits (65), Expect = 4.8 Identities = 18/63 (28%), Positives = 29/63 (46%) Frame = +2 Query: 191 LTTDVAVPVVDLSCSRSDXXXXXXXXXXXXXFFLLANHGVPEAAMSGMLAAVRRFNEEPT 370 +T ++P+VDLS + D FF + NHG+P A+S + + +F P Sbjct: 21 ITFSSSIPLVDLS--KPDAKTLIVKACEDFGFFKVINHGIPLDAISQLESEAFKFFSLPQ 78 Query: 371 EAK 379 K Sbjct: 79 TEK 81
>RGA4_SCHPO (O74360) Probable Rho-type GTPase-activating protein 4| Length = 933 Score = 29.3 bits (64), Expect = 6.3 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = +3 Query: 6 TLHTECDRELASFIERQWRPTASARSGPSTTPRPASRASSTPAPQ 140 +L+ + +RELA E+Q + S+ G + ++R STP+P+ Sbjct: 583 SLNNQLERELAYLREQQHKKRTSSSFGIFNNDKKSNRTISTPSPR 627
>CIT1_ECOLI (P07661) Citrate-proton symporter (Citrate transporter) (Citrate| carrier protein) (Citrate utilization determinant) (Citrate utilization protein A) Length = 431 Score = 29.3 bits (64), Expect = 6.3 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -3 Query: 219 TTGTATSVVRVDGVKESGGWWKMAGMAVAPASTRPLTPALVS 94 T +T++V++ G K S GWW M A+T L L S Sbjct: 381 TPAISTALVQLTGDKSSPGWWLMCAALCGLAATTMLFARLSS 422
>RIP1_MOMCH (P16094) Ribosome-inactivating protein momordin I precursor (EC| 3.2.2.22) (rRNA N-glycosidase) (Alpha-momorcharin) (Alpha-MMC) Length = 286 Score = 29.3 bits (64), Expect = 6.3 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +2 Query: 353 FNEEPTEAKAPYYTRDAARRVR--YSCNADLFQTLVGKWRDTI 475 FNE E + Y RDA R++ YS N + Q GK R+ I Sbjct: 106 FNEPAAELASQYVFRDARRKITLPYSGNYERLQIAAGKPREKI 148
>RGS12_HUMAN (O14924) Regulator of G-protein signaling 12 (RGS12)| Length = 1447 Score = 29.3 bits (64), Expect = 6.3 Identities = 16/37 (43%), Positives = 18/37 (48%) Frame = +3 Query: 27 RELASFIERQWRPTASARSGPSTTPRPASRASSTPAP 137 RE AS QW P + PST+P ASS P P Sbjct: 1251 RESASQPGEQWEPVQESSDSPSTSP---GSASSPPGP 1284
>CIT1_SALTY (P0A2G3) Citrate-proton symporter (Citrate transporter) (Citrate| carrier protein) (Citrate utilization determinant) (Citrate utilization protein A) Length = 434 Score = 28.9 bits (63), Expect = 8.2 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -3 Query: 219 TTGTATSVVRVDGVKESGGWWKMAGMAVAPASTRPL 112 T +T++V++ G K S GWW M A+T L Sbjct: 384 TPAISTALVKLTGDKSSPGWWLMCAALCGLAATAML 419
>CIT1_SALTI (P0A2G4) Citrate-proton symporter (Citrate transporter) (Citrate| carrier protein) (Citrate utilization determinant) (Citrate utilization protein A) Length = 434 Score = 28.9 bits (63), Expect = 8.2 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -3 Query: 219 TTGTATSVVRVDGVKESGGWWKMAGMAVAPASTRPL 112 T +T++V++ G K S GWW M A+T L Sbjct: 384 TPAISTALVKLTGDKSSPGWWLMCAALCGLAATAML 419 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,008,869 Number of Sequences: 219361 Number of extensions: 639018 Number of successful extensions: 3903 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3362 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3865 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)