Clone Name | bart37h08 |
---|---|
Clone Library Name | barley_pub |
>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence Length = 150155 Score = 153 bits (77), Expect = 7e-34 Identities = 101/109 (92%) Strand = Plus / Plus Query: 64 cgaccgcctcagcgcgctcagggccttcgacgacaccaaggccggcgtcaagggcctcgt 123 |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 13638 cgaccgcctccgcgagctcaaggccttcgacgacaccaaggccggcgtcaagggcctcgt 13697 Query: 124 cgacgccggcgccacagccatcccggccatcttccaccaccctcccgac 172 ||||||||||| ||| ||| ||||| |||||||||||||||||||||| Sbjct: 13698 cgacgccggcgtcaccgccgtcccgcgcatcttccaccaccctcccgac 13746 Score = 56.0 bits (28), Expect = 1e-04 Identities = 120/148 (81%), Gaps = 2/148 (1%) Strand = Plus / Plus Query: 266 gcggcggagacggcgggcttcttcctgctggcgaaccacggcgtgccggaggcggc-cat 324 ||||||||| ||| ||||||||||| | ||| |||||||||||||||| ||| | || Sbjct: 13858 gcggcggagtcggtgggcttcttccaggtggtcaaccacggcgtgccgg-cgcgcctcac 13916 Query: 325 gtcggggatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgcc 384 | |||||||| ||||| |||||||| ||||||||| |||| ||| ||| |||||| | Sbjct: 13917 ggacgggatgctcgcggcggtgcggcggttcaacgagcggccggcggcggcgaaggcggc 13976 Query: 385 ctactacacgcgggacgccgcgaggcgc 412 | ||||||||| ||||| ||| ||||| Sbjct: 13977 gttctacacgcgcgacgcggcgcggcgc 14004
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 153 bits (77), Expect = 7e-34 Identities = 101/109 (92%) Strand = Plus / Minus Query: 64 cgaccgcctcagcgcgctcagggccttcgacgacaccaaggccggcgtcaagggcctcgt 123 |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 27290757 cgaccgcctccgcgagctcaaggccttcgacgacaccaaggccggcgtcaagggcctcgt 27290698 Query: 124 cgacgccggcgccacagccatcccggccatcttccaccaccctcccgac 172 ||||||||||| ||| ||| ||||| |||||||||||||||||||||| Sbjct: 27290697 cgacgccggcgtcaccgccgtcccgcgcatcttccaccaccctcccgac 27290649 Score = 111 bits (56), Expect = 2e-21 Identities = 74/80 (92%) Strand = Plus / Plus Query: 85 ggccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcgccacagccat 144 ||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||| |||| Sbjct: 36014571 ggccttcgacgacacaaaggccggcgtgaagggcctcgtcgatgccggcgtcacaaccat 36014630 Query: 145 cccggccatcttccaccacc 164 ||| |||||||||||||||| Sbjct: 36014631 ccccgccatcttccaccacc 36014650 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaag 379 |||||||||||| |||||||| ||||||||| ||||| |||||| |||| Sbjct: 36014820 gatgctggcggcggtgcggcggttcaacgagcagccggcggagggcaag 36014868 Score = 56.0 bits (28), Expect = 1e-04 Identities = 120/148 (81%), Gaps = 2/148 (1%) Strand = Plus / Minus Query: 266 gcggcggagacggcgggcttcttcctgctggcgaaccacggcgtgccggaggcggc-cat 324 ||||||||| ||| ||||||||||| | ||| |||||||||||||||| ||| | || Sbjct: 27290537 gcggcggagtcggtgggcttcttccaggtggtcaaccacggcgtgccgg-cgcgcctcac 27290479 Query: 325 gtcggggatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgcc 384 | |||||||| ||||| |||||||| ||||||||| |||| ||| ||| |||||| | Sbjct: 27290478 ggacgggatgctcgcggcggtgcggcggttcaacgagcggccggcggcggcgaaggcggc 27290419 Query: 385 ctactacacgcgggacgccgcgaggcgc 412 | ||||||||| ||||| ||| ||||| Sbjct: 27290418 gttctacacgcgcgacgcggcgcggcgc 27290391 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 260 aaggccgcggcggagacggcgg 281 |||||||||||||||||||||| Sbjct: 14519646 aaggccgcggcggagacggcgg 14519625 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 gcgatcgagagctagctagct 42 ||||||||||||||||||||| Sbjct: 23681196 gcgatcgagagctagctagct 23681216
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 153 bits (77), Expect = 7e-34 Identities = 101/109 (92%) Strand = Plus / Minus Query: 64 cgaccgcctcagcgcgctcagggccttcgacgacaccaaggccggcgtcaagggcctcgt 123 |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 27382080 cgaccgcctccgcgagctcaaggccttcgacgacaccaaggccggcgtcaagggcctcgt 27382021 Query: 124 cgacgccggcgccacagccatcccggccatcttccaccaccctcccgac 172 ||||||||||| ||| ||| ||||| |||||||||||||||||||||| Sbjct: 27382020 cgacgccggcgtcaccgccgtcccgcgcatcttccaccaccctcccgac 27381972 Score = 111 bits (56), Expect = 2e-21 Identities = 74/80 (92%) Strand = Plus / Plus Query: 85 ggccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcgccacagccat 144 ||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||| |||| Sbjct: 36104645 ggccttcgacgacacaaaggccggcgtgaagggcctcgtcgatgccggcgtcacaaccat 36104704 Query: 145 cccggccatcttccaccacc 164 ||| |||||||||||||||| Sbjct: 36104705 ccccgccatcttccaccacc 36104724 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaag 379 |||||||||||| |||||||| ||||||||| ||||| |||||| |||| Sbjct: 36104894 gatgctggcggcggtgcggcggttcaacgagcagccggcggagggcaag 36104942 Score = 56.0 bits (28), Expect = 1e-04 Identities = 120/148 (81%), Gaps = 2/148 (1%) Strand = Plus / Minus Query: 266 gcggcggagacggcgggcttcttcctgctggcgaaccacggcgtgccggaggcggc-cat 324 ||||||||| ||| ||||||||||| | ||| |||||||||||||||| ||| | || Sbjct: 27381860 gcggcggagtcggtgggcttcttccaggtggtcaaccacggcgtgccgg-cgcgcctcac 27381802 Query: 325 gtcggggatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgcc 384 | |||||||| ||||| |||||||| ||||||||| |||| ||| ||| |||||| | Sbjct: 27381801 ggacgggatgctcgcggcggtgcggcggttcaacgagcggccggcggcggcgaaggcggc 27381742 Query: 385 ctactacacgcgggacgccgcgaggcgc 412 | ||||||||| ||||| ||| ||||| Sbjct: 27381741 gttctacacgcgcgacgcggcgcggcgc 27381714 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 260 aaggccgcggcggagacggcgg 281 |||||||||||||||||||||| Sbjct: 14514617 aaggccgcggcggagacggcgg 14514596 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 gcgatcgagagctagctagct 42 ||||||||||||||||||||| Sbjct: 23674224 gcgatcgagagctagctagct 23674244
>ref|XM_470509.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1086 Score = 111 bits (56), Expect = 2e-21 Identities = 74/80 (92%) Strand = Plus / Plus Query: 85 ggccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcgccacagccat 144 ||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||| |||| Sbjct: 42 ggccttcgacgacacaaaggccggcgtgaagggcctcgtcgatgccggcgtcacaaccat 101 Query: 145 cccggccatcttccaccacc 164 ||| |||||||||||||||| Sbjct: 102 ccccgccatcttccaccacc 121 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaag 379 |||||||||||| |||||||| ||||||||| ||||| |||||| |||| Sbjct: 291 gatgctggcggcggtgcggcggttcaacgagcagccggcggagggcaag 339
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 111 bits (56), Expect = 2e-21 Identities = 74/80 (92%) Strand = Plus / Plus Query: 85 ggccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcgccacagccat 144 ||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||| |||| Sbjct: 76082 ggccttcgacgacacaaaggccggcgtgaagggcctcgtcgatgccggcgtcacaaccat 76141 Query: 145 cccggccatcttccaccacc 164 ||| |||||||||||||||| Sbjct: 76142 ccccgccatcttccaccacc 76161 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaag 379 |||||||||||| |||||||| ||||||||| ||||| |||||| |||| Sbjct: 76331 gatgctggcggcggtgcggcggttcaacgagcagccggcggagggcaag 76379
>dbj|AK071828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118E08, full insert sequence Length = 1252 Score = 111 bits (56), Expect = 2e-21 Identities = 74/80 (92%) Strand = Plus / Plus Query: 85 ggccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcgccacagccat 144 ||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||| |||| Sbjct: 61 ggccttcgacgacacaaaggccggcgtgaagggcctcgtcgatgccggcgtcacaaccat 120 Query: 145 cccggccatcttccaccacc 164 ||| |||||||||||||||| Sbjct: 121 ccccgccatcttccaccacc 140 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaag 379 |||||||||||| |||||||| ||||||||| ||||| |||||| |||| Sbjct: 310 gatgctggcggcggtgcggcggttcaacgagcagccggcggagggcaag 358
>ref|XM_482192.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 86 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcgccacagccatc 145 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 43 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcgtcaccaccatc 102 Query: 146 ccggccatcttccaccaccctcccgac 172 || | |||||| |||||| |||||| Sbjct: 103 ccctacttcttccgccacccgcccgac 129 Score = 69.9 bits (35), Expect = 8e-09 Identities = 56/63 (88%) Strand = Plus / Plus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgccctacta 390 |||||| ||||| ||||||||||||||||||||||| |||||| |||| ||||||||| Sbjct: 300 gatgctcgcggcggtgcggcgcttcaacgaggagcccctggaggcgaaggtgccctacta 359 Query: 391 cac 393 ||| Sbjct: 360 cac 362
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Minus Query: 86 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcgccacagccatc 145 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 18502846 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcgtcaccaccatc 18502787 Query: 146 ccggccatcttccaccaccctcccgac 172 || | |||||| |||||| |||||| Sbjct: 18502786 ccctacttcttccgccacccgcccgac 18502760 Score = 97.6 bits (49), Expect = 3e-17 Identities = 49/49 (100%) Strand = Plus / Minus Query: 86 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 134 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18563000 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 18562952 Score = 97.6 bits (49), Expect = 3e-17 Identities = 49/49 (100%) Strand = Plus / Minus Query: 86 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 134 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18536303 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 18536255 Score = 97.6 bits (49), Expect = 3e-17 Identities = 49/49 (100%) Strand = Plus / Minus Query: 86 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 134 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18485909 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 18485861 Score = 93.7 bits (47), Expect = 5e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 85 ggccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcgccacagccat 144 |||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||| Sbjct: 18540549 ggccttcgacaacaccaaggccggtgtcaagggcctcgtcgacgccggcgtcaccgccat 18540490 Query: 145 ccc 147 ||| Sbjct: 18540489 ccc 18540487 Score = 73.8 bits (37), Expect = 5e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 64 cgaccgcctcagcgcgctcagggccttcgacgacaccaaggccggcgtcaagggcctcgt 123 |||||||||| ||| ||| ||||||||||||||||||||||||||||||| | ||||| Sbjct: 18574425 cgaccgcctccgcgacctccaggccttcgacgacaccaaggccggcgtcaagagactcgt 18574484 Query: 124 cgacgccggcgccacagccatcccggccatcttccaccacc 164 ||| || |||| ||| || |||| | | |||||||||||| Sbjct: 18574485 cgatgctggcgtcaccaccgtccccgacttcttccaccacc 18574525 Score = 69.9 bits (35), Expect = 8e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgccctacta 390 |||||| ||||| ||||||||||||||||||||||| |||||| |||| ||||||||| Sbjct: 18562743 gatgctcgcggcggtgcggcgcttcaacgaggagcccctggaggcgaaggtgccctacta 18562684 Query: 391 cac 393 ||| Sbjct: 18562683 cac 18562681 Score = 69.9 bits (35), Expect = 8e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgccctacta 390 |||||| ||||| ||||||||||||||||||||||| |||||| |||| ||||||||| Sbjct: 18502589 gatgctcgcggcggtgcggcgcttcaacgaggagcccctggaggcgaaggtgccctacta 18502530 Query: 391 cac 393 ||| Sbjct: 18502529 cac 18502527 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgccctacta 390 |||||| ||||| | |||||| ||||||||| |||| ||||||| |||||||||||||| Sbjct: 18485652 gatgctcgcggcggcgcggcggttcaacgagcagcccgcggaggcgaaggcgccctacta 18485593 Query: 391 cac 393 ||| Sbjct: 18485592 cac 18485590 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgccctacta 390 |||||| ||||| |||||||||||| |||||||||| |||||| |||| ||| ||||| Sbjct: 18536065 gatgctcgcggcggtgcggcgcttccacgaggagcccctggaggcgaaggtgccgtacta 18536006 Query: 391 cac 393 ||| Sbjct: 18536005 cac 18536003 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gcctcgtcgacgccggcgcc 136 |||||||||||||||||||| Sbjct: 19869371 gcctcgtcgacgccggcgcc 19869390
>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0671F11 Length = 159409 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Minus Query: 86 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcgccacagccatc 145 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 84869 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcgtcaccaccatc 84810 Query: 146 ccggccatcttccaccaccctcccgac 172 || | |||||| |||||| |||||| Sbjct: 84809 ccctacttcttccgccacccgcccgac 84783 Score = 97.6 bits (49), Expect = 3e-17 Identities = 49/49 (100%) Strand = Plus / Minus Query: 86 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 134 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145023 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 144975 Score = 97.6 bits (49), Expect = 3e-17 Identities = 49/49 (100%) Strand = Plus / Minus Query: 86 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 134 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118326 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 118278 Score = 97.6 bits (49), Expect = 3e-17 Identities = 49/49 (100%) Strand = Plus / Minus Query: 86 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 134 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67932 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 67884 Score = 93.7 bits (47), Expect = 5e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 85 ggccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcgccacagccat 144 |||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||| Sbjct: 122572 ggccttcgacaacaccaaggccggtgtcaagggcctcgtcgacgccggcgtcaccgccat 122513 Query: 145 ccc 147 ||| Sbjct: 122512 ccc 122510 Score = 73.8 bits (37), Expect = 5e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 64 cgaccgcctcagcgcgctcagggccttcgacgacaccaaggccggcgtcaagggcctcgt 123 |||||||||| ||| ||| ||||||||||||||||||||||||||||||| | ||||| Sbjct: 156448 cgaccgcctccgcgacctccaggccttcgacgacaccaaggccggcgtcaagagactcgt 156507 Query: 124 cgacgccggcgccacagccatcccggccatcttccaccacc 164 ||| || |||| ||| || |||| | | |||||||||||| Sbjct: 156508 cgatgctggcgtcaccaccgtccccgacttcttccaccacc 156548 Score = 69.9 bits (35), Expect = 8e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgccctacta 390 |||||| ||||| ||||||||||||||||||||||| |||||| |||| ||||||||| Sbjct: 144766 gatgctcgcggcggtgcggcgcttcaacgaggagcccctggaggcgaaggtgccctacta 144707 Query: 391 cac 393 ||| Sbjct: 144706 cac 144704 Score = 69.9 bits (35), Expect = 8e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgccctacta 390 |||||| ||||| ||||||||||||||||||||||| |||||| |||| ||||||||| Sbjct: 84612 gatgctcgcggcggtgcggcgcttcaacgaggagcccctggaggcgaaggtgccctacta 84553 Query: 391 cac 393 ||| Sbjct: 84552 cac 84550 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgccctacta 390 |||||| ||||| | |||||| ||||||||| |||| ||||||| |||||||||||||| Sbjct: 67675 gatgctcgcggcggcgcggcggttcaacgagcagcccgcggaggcgaaggcgccctacta 67616 Query: 391 cac 393 ||| Sbjct: 67615 cac 67613 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgccctacta 390 |||||| ||||| |||||||||||| |||||||||| |||||| |||| ||| ||||| Sbjct: 118088 gatgctcgcggcggtgcggcgcttccacgaggagcccctggaggcgaaggtgccgtacta 118029 Query: 391 cac 393 ||| Sbjct: 118028 cac 118026
>ref|XM_482200.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1131 Score = 97.6 bits (49), Expect = 3e-17 Identities = 49/49 (100%) Strand = Plus / Plus Query: 86 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 134 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 43 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 91 Score = 69.9 bits (35), Expect = 8e-09 Identities = 56/63 (88%) Strand = Plus / Plus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgccctacta 390 |||||| ||||| ||||||||||||||||||||||| |||||| |||| ||||||||| Sbjct: 300 gatgctcgcggcggtgcggcgcttcaacgaggagcccctggaggcgaaggtgccctacta 359 Query: 391 cac 393 ||| Sbjct: 360 cac 362
>ref|XM_482188.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1478 Score = 97.6 bits (49), Expect = 3e-17 Identities = 49/49 (100%) Strand = Plus / Plus Query: 86 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 134 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 164 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgccctacta 390 |||||| ||||| | |||||| ||||||||| |||| ||||||| |||||||||||||| Sbjct: 373 gatgctcgcggcggcgcggcggttcaacgagcagcccgcggaggcgaaggcgccctacta 432 Query: 391 cac 393 ||| Sbjct: 433 cac 435
>dbj|AK068286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K15, full insert sequence Length = 1478 Score = 97.6 bits (49), Expect = 3e-17 Identities = 49/49 (100%) Strand = Plus / Plus Query: 86 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 134 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 164 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgccctacta 390 |||||| ||||| | |||||| ||||||||| |||| ||||||| |||||||||||||| Sbjct: 373 gatgctcgcggcggcgcggcggttcaacgagcagcccgcggaggcgaaggcgccctacta 432 Query: 391 cac 393 ||| Sbjct: 433 cac 435
>ref|XM_482196.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1146 Score = 93.7 bits (47), Expect = 5e-16 Identities = 59/63 (93%) Strand = Plus / Plus Query: 85 ggccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcgccacagccat 144 |||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||| Sbjct: 42 ggccttcgacaacaccaaggccggtgtcaagggcctcgtcgacgccggcgtcaccgccat 101 Query: 145 ccc 147 ||| Sbjct: 102 ccc 104 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 331 gatgctggcggccgtgcggcgcttcaacgaggagccgacggaggccaaggcgccctacta 390 |||||| ||||| |||||||||||| |||||||||| |||||| |||| ||| ||||| Sbjct: 300 gatgctcgcggcggtgcggcgcttccacgaggagcccctggaggcgaaggtgccgtacta 359 Query: 391 cac 393 ||| Sbjct: 360 cac 362
>ref|XM_482201.1| Oryza sativa (japonica cultivar-group), mRNA Length = 252 Score = 73.8 bits (37), Expect = 5e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 64 cgaccgcctcagcgcgctcagggccttcgacgacaccaaggccggcgtcaagggcctcgt 123 |||||||||| ||| ||| ||||||||||||||||||||||||||||||| | ||||| Sbjct: 45 cgaccgcctccgcgacctccaggccttcgacgacaccaaggccggcgtcaagagactcgt 104 Query: 124 cgacgccggcgccacagccatcccggccatcttccaccacc 164 ||| || |||| ||| || |||| | | |||||||||||| Sbjct: 105 cgatgctggcgtcaccaccgtccccgacttcttccaccacc 145
>dbj|AP004193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1756_G07 Length = 149457 Score = 73.8 bits (37), Expect = 5e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 64 cgaccgcctcagcgcgctcagggccttcgacgacaccaaggccggcgtcaagggcctcgt 123 |||||||||| ||| ||| ||||||||||||||||||||||||||||||| | ||||| Sbjct: 1695 cgaccgcctccgcgacctccaggccttcgacgacaccaaggccggcgtcaagagactcgt 1754 Query: 124 cgacgccggcgccacagccatcccggccatcttccaccacc 164 ||| || |||| ||| || |||| | | |||||||||||| Sbjct: 1755 cgatgctggcgtcaccaccgtccccgacttcttccaccacc 1795
>gb|AF540907.1| Zea mays 2-oxoglutarate-dependent oxygenase (bx6) mRNA, complete cds Length = 1365 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 265 cgcggcggagacggcgggcttcttcctgctggcgaaccacggcgtgccggagg 317 |||||| | ||||| |||||||||| ||||| ||||||||||||| |||||| Sbjct: 314 cgcggccgggacggtgggcttcttctggctggtgaaccacggcgtggcggagg 366 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 141 ccatcccggccatcttccaccaccc 165 |||||||| |||||||||||||||| Sbjct: 163 ccatcccgtccatcttccaccaccc 187
>gb|AY104457.1| Zea mays PCO086194 mRNA sequence Length = 1459 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 265 cgcggcggagacggcgggcttcttcctgctggcgaaccacggcgtgccggagg 317 |||||| | ||||| |||||||||| ||||| ||||||||||||| |||||| Sbjct: 334 cgcggccgggacggtgggcttcttctggctggtgaaccacggcgtggcggagg 386 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 141 ccatcccggccatcttccaccaccc 165 |||||||| |||||||||||||||| Sbjct: 183 ccatcccgtccatcttccaccaccc 207
>ref|XM_470682.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1263 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 260 aaggccgcggcggagacggcgg 281 |||||||||||||||||||||| Sbjct: 158 aaggccgcggcggagacggcgg 137
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 315 aggcggccatgtcggggatgctggcg 340 |||||||||||||||| ||||||||| Sbjct: 2224986 aggcggccatgtcgggcatgctggcg 2224961
>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete sequence Length = 147130 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 260 aaggccgcggcggagacggcgg 281 |||||||||||||||||||||| Sbjct: 138065 aaggccgcggcggagacggcgg 138086
>gb|AC012595.10| Homo sapiens BAC clone RP11-539J22 from 2, complete sequence Length = 170686 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 314 gaggcggccatgtcggggatgc 335 |||||||||||||||||||||| Sbjct: 136904 gaggcggccatgtcggggatgc 136925
>gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete sequence Length = 135594 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 260 aaggccgcggcggagacggcgg 281 |||||||||||||||||||||| Sbjct: 21739 aaggccgcggcggagacggcgg 21760
>dbj|AK100417.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087N09, full insert sequence Length = 1563 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 260 aaggccgcggcggagacggcgg 281 |||||||||||||||||||||| Sbjct: 363 aaggccgcggcggagacggcgg 342
>ref|XM_476744.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1298 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 281 ggcttcttcctgctggcgaaccacggcgtgccg 313 |||||||||| | ||| |||||||||||||||| Sbjct: 253 ggcttcttccaggtggtgaaccacggcgtgccg 285
>gb|AC091246.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0002I03 map E1419S, complete sequence Length = 150945 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 gcgatcgagagctagctagct 42 ||||||||||||||||||||| Sbjct: 129279 gcgatcgagagctagctagct 129299
>gb|AY693642.1| Streptomyces netropsis two component response regulator-like gene, partial cds; netropsin resistance protein subunit 1 (netP1) and netropsin resistance protein subunit 2 (netP2) genes, complete cds; and acyl-CoA synthetase-like gene, partial cds Length = 5919 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 cgacgtcgccgtcccggtcgt 219 ||||||||||||||||||||| Sbjct: 2190 cgacgtcgccgtcccggtcgt 2170
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 ggcgccacagccatcccggcc 151 ||||||||||||||||||||| Sbjct: 1187923 ggcgccacagccatcccggcc 1187903
>gb|AF408848.1| Xanthobacter sp. Py2 zeaxanthin biosynthetic gene cluster, complete sequence Length = 3801 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 cggcgtgccggaggcggccat 324 ||||||||||||||||||||| Sbjct: 3425 cggcgtgccggaggcggccat 3445
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 ggcgccacagccatcccggcc 151 ||||||||||||||||||||| Sbjct: 154090 ggcgccacagccatcccggcc 154070
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16 Length = 348642 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 315 aggcggccatgtcggggatgctggc 339 |||| |||||||||||||||||||| Sbjct: 340400 aggccgccatgtcggggatgctggc 340376
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 aggcggccatgtcggggatgctggc 339 |||| |||||||||||||||||||| Sbjct: 244455 aggccgccatgtcggggatgctggc 244479
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 aggcggccatgtcggggatgctggc 339 |||| |||||||||||||||||||| Sbjct: 270244 aggccgccatgtcggggatgctggc 270268
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 ggcgccacagccatcccggcc 151 ||||||||||||||||||||| Sbjct: 201325 ggcgccacagccatcccggcc 201305
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 ggaggcggccatgtcggggat 333 ||||||||||||||||||||| Sbjct: 192446 ggaggcggccatgtcggggat 192466
>gb|AF275689.1|AF275689 Pleurothallis asaroides internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 746 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 gccgtcccggtcgtcgacctc 226 ||||||||||||||||||||| Sbjct: 183 gccgtcccggtcgtcgacctc 203
>gb|AC092390.3| Oryza sativa chromosome 3 BAC OSJNBb0013K08 genomic sequence, complete sequence Length = 120116 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 gcgatcgagagctagctagct 42 ||||||||||||||||||||| Sbjct: 13250 gcgatcgagagctagctagct 13270
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 244 cgcggtcggcgcggtcaaggccgcggcgg 272 |||||||| |||| ||||||||||||||| Sbjct: 544045 cgcggtcgacgcgatcaaggccgcggcgg 544073
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 aggccgcggcggagacggcgg 281 ||||||||||||||||||||| Sbjct: 1093297 aggccgcggcggagacggcgg 1093317
>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0660D08 Length = 146915 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 aggccgcggcggagacggcgg 281 ||||||||||||||||||||| Sbjct: 69520 aggccgcggcggagacggcgg 69540
>gb|AF262856.1| Pleurothallis auriculata isolate MWC1456 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, partial sequence Length = 726 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 gccgtcccggtcgtcgacctc 226 ||||||||||||||||||||| Sbjct: 182 gccgtcccggtcgtcgacctc 202
>gb|AF262852.1| Pleurothallis sarracenia isolate MWC1309 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, partial sequence Length = 730 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 gccgtcccggtcgtcgacctc 226 ||||||||||||||||||||| Sbjct: 175 gccgtcccggtcgtcgacctc 195
>gb|AF262851.1| Pleurothallis saurocephala isolate MWC5534 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, partial sequence Length = 769 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 gccgtcccggtcgtcgacctc 226 ||||||||||||||||||||| Sbjct: 181 gccgtcccggtcgtcgacctc 201
>gb|AF262848.1| Pleurothallis sicaria isolate MWC5609 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, partial sequence Length = 772 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 gccgtcccggtcgtcgacctc 226 ||||||||||||||||||||| Sbjct: 181 gccgtcccggtcgtcgacctc 201
>dbj|AK121818.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099A15, full insert sequence Length = 1301 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 281 ggcttcttcctgctggcgaaccacggcgtgccg 313 |||||||||| | ||| |||||||||||||||| Sbjct: 257 ggcttcttccaggtggtgaaccacggcgtgccg 289
>dbj|AK060318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F03, full insert sequence Length = 1298 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 281 ggcttcttcctgctggcgaaccacggcgtgccg 313 |||||||||| | ||| |||||||||||||||| Sbjct: 253 ggcttcttccaggtggtgaaccacggcgtgccg 285
>emb|CR847514.13| Zebrafish DNA sequence from clone DKEYP-11D6 in linkage group 3, complete sequence Length = 165569 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 ccatcttccaccaccctcccg 170 ||||||||||||||||||||| Sbjct: 111554 ccatcttccaccaccctcccg 111534
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 249 tcggcgcggtcaaggccgcggcgga 273 |||| |||||||||||||||||||| Sbjct: 169671 tcggtgcggtcaaggccgcggcgga 169695
>dbj|AB071820.1| Cucumis melo CmE8 gene, complete cds Length = 3636 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 86 gccttcgacgacaccaaggccggcgtcaagggcctcgtcgacgccggcg 134 ||||||||| | || |||||||||||||| ||||| || ||| |||||| Sbjct: 1961 gccttcgaccaaacaaaggccggcgtcaaaggccttgttgactccggcg 2009
>ref|XM_482405.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2073 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gcctcgtcgacgccggcgcc 136 |||||||||||||||||||| Sbjct: 1265 gcctcgtcgacgccggcgcc 1284
>ref|XM_467533.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1506 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 ggagccgacggaggccaaggcgcc 384 ||||||||||||||| |||||||| Sbjct: 1328 ggagccgacggaggcgaaggcgcc 1305
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 291 tgctggcgaaccacggcgtgccgg 314 |||||||||| ||||||||||||| Sbjct: 1433038 tgctggcgaagcacggcgtgccgg 1433061
>ref|XM_476364.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1077 Score = 40.1 bits (20), Expect = 6.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 280 gggcttcttcctgctggcgaaccacggcgtgccggaggcg 319 ||||||||||| | || | ||||||||||||||| ||||| Sbjct: 836 gggcttcttccaggtgaccaaccacggcgtgccgcaggcg 797
>ref|NM_194218.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1729 Score = 40.1 bits (20), Expect = 6.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 280 gggcttcttcctgctggcgaaccacggcgtgccggaggcg 319 ||||||||||| | || | ||||||||||||||| ||||| Sbjct: 603 gggcttcttccaggtgaccaaccacggcgtgccgcaggcg 642
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 tgctggcgaaccacggcgtgccgg 314 |||||||| ||||||||||||||| Sbjct: 3313535 tgctggcggaccacggcgtgccgg 3313512 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 tcggcgcggtcaaggccgcg 268 |||||||||||||||||||| Sbjct: 861603 tcggcgcggtcaaggccgcg 861584
>ref|XM_750204.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g09640) partial mRNA Length = 1635 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 gagcgacaatggcgtccgac 67 |||||||||||||||||||| Sbjct: 235 gagcgacaatggcgtccgac 216
>gb|AE008725.1| Salmonella typhimurium LT2, section 33 of 220 of the complete genome Length = 24057 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cgacgccggcgccacagcca 143 |||||||||||||||||||| Sbjct: 12313 cgacgccggcgccacagcca 12294
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 441 tccagacgctggtcggcaagtggc 464 ||||| |||||||||||||||||| Sbjct: 3732750 tccagccgctggtcggcaagtggc 3732773
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 ggtcggcgcggtcaaggccg 266 |||||||||||||||||||| Sbjct: 198447 ggtcggcgcggtcaaggccg 198466
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ccgacggaggccaaggcgcc 384 |||||||||||||||||||| Sbjct: 223489 ccgacggaggccaaggcgcc 223508
>ref|NM_166653.1| Drosophila melanogaster seizure CG3182-RB, transcript variant B (sei), mRNA Length = 2754 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 aacgccgacctcttccagac 447 |||||||||||||||||||| Sbjct: 772 aacgccgacctcttccagac 791
>dbj|AB206672.1| Paracoccus sp. N81106 carotenoid biosynthesis gene cluster (idi, crtW, crtZ, crtY, crtI, crtB, crtE, crtX), complete cds Length = 10074 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 acatggacgacgcggacgag 496 |||||||||||||||||||| Sbjct: 7749 acatggacgacgcggacgag 7730
>ref|NM_057365.3| Drosophila melanogaster seizure CG3182-RA, transcript variant A (sei), mRNA Length = 2718 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 aacgccgacctcttccagac 447 |||||||||||||||||||| Sbjct: 736 aacgccgacctcttccagac 755
>gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete sequence Length = 183046 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 cgatcgagagctagctagct 42 |||||||||||||||||||| Sbjct: 158438 cgatcgagagctagctagct 158419
>gb|AC099018.1| Drosophila melanogaster, chromosome 2R, region 60A-60B, BAC clone BACR28M05, complete sequence Length = 154840 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 aacgccgacctcttccagac 447 |||||||||||||||||||| Sbjct: 141505 aacgccgacctcttccagac 141524
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 gtcaaggccgcggcggagac 276 |||||||||||||||||||| Sbjct: 3394397 gtcaaggccgcggcggagac 3394416
>emb|BX510333.14| Zebrafish DNA sequence from clone DKEYP-82D1 in linkage group 2, complete sequence Length = 198845 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 gtcaaggccgcggcggagac 276 |||||||||||||||||||| Sbjct: 35841 gtcaaggccgcggcggagac 35860
>gb|AY058350.1| Drosophila melanogaster GH12235 full length cDNA Length = 2729 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 aacgccgacctcttccagac 447 |||||||||||||||||||| Sbjct: 724 aacgccgacctcttccagac 743
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gtcggcgcggtcaaggccgc 267 |||||||||||||||||||| Sbjct: 1084146 gtcggcgcggtcaaggccgc 1084165
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tacatggacgacgcggacga 495 |||||||||||||||||||| Sbjct: 2604241 tacatggacgacgcggacga 2604260
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 85 ggccttcgacgacaccaaggccggcgtc 112 |||||||| ||||||||||| ||||||| Sbjct: 4241084 ggccttcgccgacaccaaggtcggcgtc 4241057
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 cgatcgagagctagctagct 42 |||||||||||||||||||| Sbjct: 21849883 cgatcgagagctagctagct 21849902
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 280 gggcttcttcctgctggcgaaccacggcgtgccggaggcg 319 ||||||||||| | || | ||||||||||||||| ||||| Sbjct: 217417 gggcttcttccaggtgaccaaccacggcgtgccgcaggcg 217456
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 ggagccgacggaggccaaggcgcc 384 ||||||||||||||| |||||||| Sbjct: 30016383 ggagccgacggaggcgaaggcgcc 30016360
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 ggacgccgcgaggcgcgtgc 416 |||||||||||||||||||| Sbjct: 37392760 ggacgccgcgaggcgcgtgc 37392741
>gb|AF366939.1| Pleurothallis johannensis internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 629 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gccgtcccggtcgtcgacct 225 |||||||||||||||||||| Sbjct: 67 gccgtcccggtcgtcgacct 86
>gb|AF366938.1| Pleurothallis fabiobarrosii internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 629 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gccgtcccggtcgtcgacct 225 |||||||||||||||||||| Sbjct: 67 gccgtcccggtcgtcgacct 86
>gb|AF366937.1| Pleurothallis teres internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 629 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gccgtcccggtcgtcgacct 225 |||||||||||||||||||| Sbjct: 67 gccgtcccggtcgtcgacct 86
>gb|AF366936.1| Pleurothallis adamantinensis internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 629 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gccgtcccggtcgtcgacct 225 |||||||||||||||||||| Sbjct: 67 gccgtcccggtcgtcgacct 86
>gb|AF366935.1| Pleurothallis teres internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 616 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gccgtcccggtcgtcgacct 225 |||||||||||||||||||| Sbjct: 54 gccgtcccggtcgtcgacct 73
>gb|AF366934.1| Pleurothallis ochreata internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 629 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gccgtcccggtcgtcgacct 225 |||||||||||||||||||| Sbjct: 67 gccgtcccggtcgtcgacct 86
>gb|AF442146.1| Solanum pinnatisectum style-specific self-incompatibility putative modifier protein HT-B2 gene, partial cds Length = 460 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 ccatcccggccatcttccaccacc 164 ||||||||||||| |||||||||| Sbjct: 256 ccatcccggccattttccaccacc 233
>gb|AF442145.1| Solanum pinnatisectum style-specific self-incompatibility putative modifier protein HT-B1 gene, partial cds Length = 460 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 ccatcccggccatcttccaccacc 164 ||||||||||||| |||||||||| Sbjct: 256 ccatcccggccattttccaccacc 233
>gb|AF442141.1| Solanum chacoense style-specific self-incompatibility putative modifier protein HT-B1 mRNA, partial cds Length = 324 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 ccatcccggccatcttccaccacc 164 ||||||||||||| |||||||||| Sbjct: 132 ccatcccggccattttccaccacc 109
>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423B08 Length = 151490 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 ggacgccgcgaggcgcgtgc 416 |||||||||||||||||||| Sbjct: 104794 ggacgccgcgaggcgcgtgc 104775
>dbj|AP004667.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0433E10 Length = 144643 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gcctcgtcgacgccggcgcc 136 |||||||||||||||||||| Sbjct: 37549 gcctcgtcgacgccggcgcc 37568
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ggccgtgcggcgcttcaacg 359 |||||||||||||||||||| Sbjct: 1251151 ggccgtgcggcgcttcaacg 1251170
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 caccaaggccggcgtcaagg 116 |||||||||||||||||||| Sbjct: 217483 caccaaggccggcgtcaagg 217502
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 ccgcggcggagacggcgggc 283 |||||||||||||||||||| Sbjct: 2853822 ccgcggcggagacggcgggc 2853803
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 ggagccgacggaggccaaggcgcc 384 ||||||||||||||| |||||||| Sbjct: 116659 ggagccgacggaggcgaaggcgcc 116636
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 40.1 bits (20), Expect = 6.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 280 gggcttcttcctgctggcgaaccacggcgtgccggaggcg 319 ||||||||||| | || | ||||||||||||||| ||||| Sbjct: 52281 gggcttcttccaggtgaccaaccacggcgtgccgcaggcg 52320
>gb|AF262858.1| Pleurothallis ochreata isolate C293 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, partial sequence Length = 618 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gccgtcccggtcgtcgacct 225 |||||||||||||||||||| Sbjct: 57 gccgtcccggtcgtcgacct 76
>gb|AF262850.1| Pleurothallis glumacea isolate MWC5870 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, partial sequence Length = 742 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gccgtcccggtcgtcgacct 225 |||||||||||||||||||| Sbjct: 177 gccgtcccggtcgtcgacct 196
>dbj|AK109056.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E10, full insert sequence Length = 1076 Score = 40.1 bits (20), Expect = 6.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 280 gggcttcttcctgctggcgaaccacggcgtgccggaggcg 319 ||||||||||| | || | ||||||||||||||| ||||| Sbjct: 835 gggcttcttccaggtgaccaaccacggcgtgccgcaggcg 796
>dbj|AK106859.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-C01, full insert sequence Length = 1729 Score = 40.1 bits (20), Expect = 6.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 280 gggcttcttcctgctggcgaaccacggcgtgccggaggcg 319 ||||||||||| | || | ||||||||||||||| ||||| Sbjct: 603 gggcttcttccaggtgaccaaccacggcgtgccgcaggcg 642
>dbj|AK070030.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037N07, full insert sequence Length = 1506 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 ggagccgacggaggccaaggcgcc 384 ||||||||||||||| |||||||| Sbjct: 1328 ggagccgacggaggcgaaggcgcc 1305
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 cgaggcgcgtgcggtacagc 424 |||||||||||||||||||| Sbjct: 4953993 cgaggcgcgtgcggtacagc 4953974
>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete sequence Length = 598988 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 aacgccgacctcttccagac 447 |||||||||||||||||||| Sbjct: 571304 aacgccgacctcttccagac 571323
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 cggcgtcaagggcctcgtcgacgc 129 |||||||||| ||||||||||||| Sbjct: 770648 cggcgtcaagcgcctcgtcgacgc 770671
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 104 gccggcgtcaagggcctcgtcgacgccg 131 ||||||||| |||||| ||||||||||| Sbjct: 2657161 gccggcgtccagggccgcgtcgacgccg 2657134
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 cgatcgagagctagctagct 42 |||||||||||||||||||| Sbjct: 21861546 cgatcgagagctagctagct 21861565
>gb|AC004642.1|AC004642 Drosophila melanogaster DNA sequence (P1s DS00543 (D193) and DS02867 (D200)), complete sequence Length = 148432 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 aacgccgacctcttccagac 447 |||||||||||||||||||| Sbjct: 41717 aacgccgacctcttccagac 41698
>gb|U42204.1|DMU42204 Drosophila melanogaster putative potassium channel subunit homolog (erg) gene, complete cds Length = 3836 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 aacgccgacctcttccagac 447 |||||||||||||||||||| Sbjct: 893 aacgccgacctcttccagac 912
>gb|U36925.1|DMU36925 Drosophila melanogaster seizure potassium channel mRNA, complete cds Length = 2692 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 aacgccgacctcttccagac 447 |||||||||||||||||||| Sbjct: 709 aacgccgacctcttccagac 728
>gb|AY819662.1| Serratia proteamaculans putative periplasmic binding protein (pbp) gene, partial cds; metalloproteinase (mpr) gene, complete cds; and putative transport protein (trp) gene, partial cds Length = 3308 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 gcggtcggcgcggtcaaggc 264 |||||||||||||||||||| Sbjct: 633 gcggtcggcgcggtcaaggc 652
>dbj|AB072481.1| Lycopersicon peruvianum LpHT-B2 gene for HT-protein, complete cds Length = 548 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 ccatcccggccatcttccaccacc 164 ||||||||||||| |||||||||| Sbjct: 315 ccatcccggccattttccaccacc 292
>dbj|AB066583.1| Lycopersicon peruvianum mRNA for HT-protein LpHT-B, complete cds Length = 413 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 ccatcccggccatcttccaccacc 164 ||||||||||||| |||||||||| Sbjct: 221 ccatcccggccattttccaccacc 198 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,075,264 Number of Sequences: 3902068 Number of extensions: 3075264 Number of successful extensions: 65383 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61940 Number of HSP's gapped (non-prelim): 3443 length of query: 503 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 481 effective length of database: 17,147,199,772 effective search space: 8247803090332 effective search space used: 8247803090332 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)