Clone Name | bart37f12 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197365.1| Oryza sativa (japonica cultivar-group) putative gamma-lyase (OSJNBa0076F20.6), mRNA Length = 1656 Score = 400 bits (202), Expect = e-108 Identities = 244/258 (94%) Strand = Plus / Plus Query: 108 caaggcgcgccgccgggagtccgacccggcggcggcactggccgcggcgcgtcacgagtt 167 ||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 111 caaggcgcggcgccgggaggccgacccggcggcggcgctggccgcggcgcgccacgagtt 170 Query: 168 cggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtgatgga 227 ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 171 cggcgagcacggcggggtgaacatgtccatcgaggcgtcggcgacgttcacggtgatgga 230 Query: 228 gccggacaccatgcgccggctcttcacgggggagctgggcccggagcgcggcgacctgta 287 |||||||||||||||||| |||||| | |||||||| ||||||||||||||||||||||| Sbjct: 231 gccggacaccatgcgccgcctcttctccggggagctcggcccggagcgcggcgacctgta 290 Query: 288 catctacagccgccacttcaacccgacggtgctggcgctggggcggcagatggccgcgct 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 291 catctacagccgccacttcaacccgacggtgctggcgctggggcggcagatggcggcgct 350 Query: 348 ggaggggaccgaggccgc 365 |||||| ||||||||||| Sbjct: 351 ggagggcaccgaggccgc 368
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence Length = 165394 Score = 400 bits (202), Expect = e-108 Identities = 244/258 (94%) Strand = Plus / Minus Query: 108 caaggcgcgccgccgggagtccgacccggcggcggcactggccgcggcgcgtcacgagtt 167 ||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 113153 caaggcgcggcgccgggaggccgacccggcggcggcgctggccgcggcgcgccacgagtt 113094 Query: 168 cggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtgatgga 227 ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 113093 cggcgagcacggcggggtgaacatgtccatcgaggcgtcggcgacgttcacggtgatgga 113034 Query: 228 gccggacaccatgcgccggctcttcacgggggagctgggcccggagcgcggcgacctgta 287 |||||||||||||||||| |||||| | |||||||| ||||||||||||||||||||||| Sbjct: 113033 gccggacaccatgcgccgcctcttctccggggagctcggcccggagcgcggcgacctgta 112974 Query: 288 catctacagccgccacttcaacccgacggtgctggcgctggggcggcagatggccgcgct 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 112973 catctacagccgccacttcaacccgacggtgctggcgctggggcggcagatggcggcgct 112914 Query: 348 ggaggggaccgaggccgc 365 |||||| ||||||||||| Sbjct: 112913 ggagggcaccgaggccgc 112896
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 400 bits (202), Expect = e-108 Identities = 244/258 (94%) Strand = Plus / Minus Query: 108 caaggcgcgccgccgggagtccgacccggcggcggcactggccgcggcgcgtcacgagtt 167 ||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 19485287 caaggcgcggcgccgggaggccgacccggcggcggcgctggccgcggcgcgccacgagtt 19485228 Query: 168 cggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtgatgga 227 ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 19485227 cggcgagcacggcggggtgaacatgtccatcgaggcgtcggcgacgttcacggtgatgga 19485168 Query: 228 gccggacaccatgcgccggctcttcacgggggagctgggcccggagcgcggcgacctgta 287 |||||||||||||||||| |||||| | |||||||| ||||||||||||||||||||||| Sbjct: 19485167 gccggacaccatgcgccgcctcttctccggggagctcggcccggagcgcggcgacctgta 19485108 Query: 288 catctacagccgccacttcaacccgacggtgctggcgctggggcggcagatggccgcgct 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 19485107 catctacagccgccacttcaacccgacggtgctggcgctggggcggcagatggcggcgct 19485048 Query: 348 ggaggggaccgaggccgc 365 |||||| ||||||||||| Sbjct: 19485047 ggagggcaccgaggccgc 19485030
>dbj|AK105942.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C01, full insert sequence Length = 1645 Score = 400 bits (202), Expect = e-108 Identities = 244/258 (94%) Strand = Plus / Plus Query: 108 caaggcgcgccgccgggagtccgacccggcggcggcactggccgcggcgcgtcacgagtt 167 ||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 158 caaggcgcggcgccgggaggccgacccggcggcggcgctggccgcggcgcgccacgagtt 217 Query: 168 cggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtgatgga 227 ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 218 cggcgagcacggcggggtgaacatgtccatcgaggcgtcggcgacgttcacggtgatgga 277 Query: 228 gccggacaccatgcgccggctcttcacgggggagctgggcccggagcgcggcgacctgta 287 |||||||||||||||||| |||||| | |||||||| ||||||||||||||||||||||| Sbjct: 278 gccggacaccatgcgccgcctcttctccggggagctcggcccggagcgcggcgacctgta 337 Query: 288 catctacagccgccacttcaacccgacggtgctggcgctggggcggcagatggccgcgct 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 338 catctacagccgccacttcaacccgacggtgctggcgctggggcggcagatggcggcgct 397 Query: 348 ggaggggaccgaggccgc 365 |||||| ||||||||||| Sbjct: 398 ggagggcaccgaggccgc 415
>dbj|AK100465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092C09, full insert sequence Length = 1704 Score = 400 bits (202), Expect = e-108 Identities = 244/258 (94%) Strand = Plus / Plus Query: 108 caaggcgcgccgccgggagtccgacccggcggcggcactggccgcggcgcgtcacgagtt 167 ||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 160 caaggcgcggcgccgggaggccgacccggcggcggcgctggccgcggcgcgccacgagtt 219 Query: 168 cggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtgatgga 227 ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 220 cggcgagcacggcggggtgaacatgtccatcgaggcgtcggcgacgttcacggtgatgga 279 Query: 228 gccggacaccatgcgccggctcttcacgggggagctgggcccggagcgcggcgacctgta 287 |||||||||||||||||| |||||| | |||||||| ||||||||||||||||||||||| Sbjct: 280 gccggacaccatgcgccgcctcttctccggggagctcggcccggagcgcggcgacctgta 339 Query: 288 catctacagccgccacttcaacccgacggtgctggcgctggggcggcagatggccgcgct 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 340 catctacagccgccacttcaacccgacggtgctggcgctggggcggcagatggcggcgct 399 Query: 348 ggaggggaccgaggccgc 365 |||||| ||||||||||| Sbjct: 400 ggagggcaccgaggccgc 417
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 400 bits (202), Expect = e-108 Identities = 244/258 (94%) Strand = Plus / Minus Query: 108 caaggcgcgccgccgggagtccgacccggcggcggcactggccgcggcgcgtcacgagtt 167 ||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 19496563 caaggcgcggcgccgggaggccgacccggcggcggcgctggccgcggcgcgccacgagtt 19496504 Query: 168 cggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtgatgga 227 ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 19496503 cggcgagcacggcggggtgaacatgtccatcgaggcgtcggcgacgttcacggtgatgga 19496444 Query: 228 gccggacaccatgcgccggctcttcacgggggagctgggcccggagcgcggcgacctgta 287 |||||||||||||||||| |||||| | |||||||| ||||||||||||||||||||||| Sbjct: 19496443 gccggacaccatgcgccgcctcttctccggggagctcggcccggagcgcggcgacctgta 19496384 Query: 288 catctacagccgccacttcaacccgacggtgctggcgctggggcggcagatggccgcgct 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 19496383 catctacagccgccacttcaacccgacggtgctggcgctggggcggcagatggcggcgct 19496324 Query: 348 ggaggggaccgaggccgc 365 |||||| ||||||||||| Sbjct: 19496323 ggagggcaccgaggccgc 19496306
>ref|NM_105141.2| Arabidopsis thaliana catalytic AT1G64660 mRNA, complete cds Length = 1628 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 163 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 222 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 216 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 275 Query: 223 atggagccggacaccatg 240 ||||| ||||| |||||| Sbjct: 276 atggaaccggataccatg 293
>gb|AF428413.1|AF428413 Arabidopsis thaliana At1g64660/F1N19_22 mRNA, complete cds Length = 1574 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 163 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 222 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 213 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 272 Query: 223 atggagccggacaccatg 240 ||||| ||||| |||||| Sbjct: 273 atggaaccggataccatg 290
>gb|AY054546.1| Arabidopsis thaliana similar to O-succinylhomoserine sulfhydrylase (At1g64660; F1N19.23) mRNA, complete cds Length = 1576 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 163 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 222 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 213 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 272 Query: 223 atggagccggacaccatg 240 ||||| ||||| |||||| Sbjct: 273 atggaaccggataccatg 290
>gb|BT006588.1| Arabidopsis thaliana At1g64660 mRNA, complete cds Length = 1326 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 163 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 222 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 157 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 216 Query: 223 atggagccggacaccatg 240 ||||| ||||| |||||| Sbjct: 217 atggaaccggataccatg 234
>emb|BX813384.1|CNS0AEBJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB14ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1519 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 163 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 222 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 191 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 250 Query: 223 atggagccggacaccatg 240 ||||| ||||| |||||| Sbjct: 251 atggaaccggataccatg 268
>emb|BX814513.1|CNS0AC0O Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB78ZB03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1569 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 163 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 222 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 198 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 257 Query: 223 atggagccggacaccatg 240 ||||| ||||| |||||| Sbjct: 258 atggaaccggataccatg 275
>emb|BX813451.1|CNS0AC3J Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB18ZB12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1482 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 163 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 222 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 183 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 242 Query: 223 atggagccggacaccatg 240 ||||| ||||| |||||| Sbjct: 243 atggaaccggataccatg 260
>emb|BX814981.1|CNS0ABGH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS21ZF04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1593 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 163 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 222 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 198 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 257 Query: 223 atggagccggacaccatg 240 ||||| ||||| |||||| Sbjct: 258 atggaaccggataccatg 275
>gb|AC009519.4|AC009519 Genomic sequence for Arabidopsis thaliana BAC F1N19 from chromosome I, complete sequence Length = 113172 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 163 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 222 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 97421 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 97480 Query: 223 atggagccggacaccatg 240 ||||| ||||| |||||| Sbjct: 97481 atggaaccggataccatg 97498
>ref|XM_477323.1| Oryza sativa (japonica cultivar-group), mRNA Length = 333 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Plus Query: 134 cggcggcggcactggccgcggcgc 157 |||||||||||||||||||||||| Sbjct: 53 cggcggcggcactggccgcggcgc 76
>ref|XM_539423.2| PREDICTED: Canis familiaris similar to calcitonin receptor (LOC482306), mRNA Length = 1662 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 cggcggcggcactggccgcgg 154 ||||||||||||||||||||| Sbjct: 1528 cggcggcggcactggccgcgg 1508
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 309 cccgacggtgctggcgctggggcggcaga 337 ||||||||||||||||||| |||||||| Sbjct: 4780298 cccgacggtgctggcgctgtcgcggcaga 4780326
>emb|Z71971.1|PDCCMGNS P.denitrificans secF, hisH, ccm[A,B,C,D,G] genes, ORF36 and ORF117 Length = 5105 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 342 cgcgctggaggggaccgaggccgcc 366 ||||||||||||| ||||||||||| Sbjct: 4607 cgcgctggagggggccgaggccgcc 4631
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 186 gaacatgtccatcgaggcctcggcc 210 ||||||||||||||||||| ||||| Sbjct: 1703734 gaacatgtccatcgaggccgcggcc 1703710 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 cgtcctcgccgccgcggagc 28 |||||||||||||||||||| Sbjct: 3593532 cgtcctcgccgccgcggagc 3593513
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 309 cccgacggtgctggcgctggggcggcaga 337 ||||||||||||||||||| |||||||| Sbjct: 5057545 cccgacggtgctggcgctgtcgcggcaga 5057573
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 ccgacccggcggcggcactggccgc 152 ||||||| ||||||||||||||||| Sbjct: 1024108 ccgaccccgcggcggcactggccgc 1024132
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 309 cccgacggtgctggcgctggggcggcaga 337 ||||||||||||||||||| |||||||| Sbjct: 1662165 cccgacggtgctggcgctgacgcggcaga 1662137
>dbj|AB070956.1| Streptomyces avermitilis peptide-7 biosynthetic gene cluster Length = 54101 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 ccgacccggcggcggcactggccgc 152 ||||||| ||||||||||||||||| Sbjct: 35940 ccgaccccgcggcggcactggccgc 35964
>ref|XM_481010.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3126 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 tcggcgagcacggcggcgtg 186 |||||||||||||||||||| Sbjct: 974 tcggcgagcacggcggcgtg 993
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cggcgagcacggcggcgtga 187 |||||||||||||||||||| Sbjct: 3253385 cggcgagcacggcggcgtga 3253404
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ccggcggcggcactggccgc 152 |||||||||||||||||||| Sbjct: 279412 ccggcggcggcactggccgc 279393
>gb|AC145809.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0023E20, complete sequence Length = 130827 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 cctcaagcgcccgacgccgc 58 |||||||||||||||||||| Sbjct: 32761 cctcaagcgcccgacgccgc 32780
>gb|AC145808.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057F07 map near 50283S, complete sequence Length = 139827 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 tcggcgacgacaacggcagc 90 |||||||||||||||||||| Sbjct: 38541 tcggcgacgacaacggcagc 38522
>gb|DQ479919.1| Mus musculus strain BTBR T+ tf/J alpha-2 adrenergic receptor (Adra2a) gene, complete cds Length = 2631 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gctgggcccggagcgcggcg 280 |||||||||||||||||||| Sbjct: 1950 gctgggcccggagcgcggcg 1969
>ref|NM_007417.2| Mus musculus adrenergic receptor, alpha 2a (Adra2a), mRNA Length = 3750 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gctgggcccggagcgcggcg 280 |||||||||||||||||||| Sbjct: 1783 gctgggcccggagcgcggcg 1802
>ref|XM_653541.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1029.2), mRNA Length = 2001 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 agcgcggcgacctgtacatc 291 |||||||||||||||||||| Sbjct: 335 agcgcggcgacctgtacatc 316
>gb|AY265146.1| Viburnum rhytidophyllum internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 608 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 gcactggccgcggcgcgtca 161 |||||||||||||||||||| Sbjct: 51 gcactggccgcggcgcgtca 70
>gb|BC023648.2| Homo sapiens golgi autoantigen, golgin subfamily a, 4, mRNA (cDNA clone IMAGE:3959585), partial cds Length = 1633 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 cggcgacgacaacggcagca 91 |||||||||||||||||||| Sbjct: 29 cggcgacgacaacggcagca 10
>gb|BC022164.2| Homo sapiens hypothetical protein FLJ31715, mRNA (cDNA clone IMAGE:3831619), with apparent retained intron Length = 2404 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 cggcgacgacaacggcagca 91 |||||||||||||||||||| Sbjct: 878 cggcgacgacaacggcagca 897
>gb|BC050444.1| Homo sapiens golgi autoantigen, golgin subfamily a, 4, mRNA (cDNA clone IMAGE:6500360), complete cds Length = 1483 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 cggcgacgacaacggcagca 91 |||||||||||||||||||| Sbjct: 52 cggcgacgacaacggcagca 33
>gb|AY382158.1| Amycolatopsis methanolica DAHP-synthase (aroG) gene, complete cds Length = 4430 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 cggcggcggcactggccgcggcgc 157 ||||||||| |||||||||||||| Sbjct: 2452 cggcggcggaactggccgcggcgc 2429
>gb|BC098562.1| Homo sapiens asparagine-linked glycosylation 12 homolog (S. cerevisiae, alpha-1,6-mannosyltransferase), mRNA (cDNA clone MGC:111358 IMAGE:30560020), complete cds Length = 2273 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ccgacggtgctggcgctggg 329 |||||||||||||||||||| Sbjct: 1038 ccgacggtgctggcgctggg 1057
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ctggccgcggcgcgtcacga 164 |||||||||||||||||||| Sbjct: 1511801 ctggccgcggcgcgtcacga 1511820
>gb|BC045543.1| Homo sapiens golgi autoantigen, golgin subfamily a, 4, mRNA (cDNA clone IMAGE:4825929), complete cds Length = 4184 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 cggcgacgacaacggcagca 91 |||||||||||||||||||| Sbjct: 108 cggcgacgacaacggcagca 89
>gb|AC097359.2| Homo sapiens chromosome 3 clone RP11-259K5, complete sequence Length = 187127 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 cggcgacgacaacggcagca 91 |||||||||||||||||||| Sbjct: 62331 cggcgacgacaacggcagca 62312
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tcgccgccgcggagcccctc 33 |||||||||||||||||||| Sbjct: 2709240 tcgccgccgcggagcccctc 2709221
>dbj|AK056277.1| Homo sapiens cDNA FLJ31715 fis, clone NT2RI2006553 Length = 2383 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 cggcgacgacaacggcagca 91 |||||||||||||||||||| Sbjct: 897 cggcgacgacaacggcagca 916
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 338 tggccgcgctggaggggaccgaggccgc 365 ||||||||||||| || ||||||||||| Sbjct: 2954153 tggccgcgctggaaggaaccgaggccgc 2954126
>dbj|AK140461.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B830040P15 product:adrenergic receptor, alpha 2a, full insert sequence Length = 3593 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gctgggcccggagcgcggcg 280 |||||||||||||||||||| Sbjct: 1628 gctgggcccggagcgcggcg 1647
>dbj|AK141573.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630032H01 product:adrenergic receptor, alpha 2a, full insert sequence Length = 3754 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gctgggcccggagcgcggcg 280 |||||||||||||||||||| Sbjct: 1787 gctgggcccggagcgcggcg 1806
>gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042K08, from chromosome 2, complete sequence Length = 164628 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 cctcaagcgcccgacgccgc 58 |||||||||||||||||||| Sbjct: 108894 cctcaagcgcccgacgccgc 108913
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gcggcggcactggccgcggc 155 |||||||||||||||||||| Sbjct: 1166657 gcggcggcactggccgcggc 1166676
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gcgcccgacgccgcagaacg 64 |||||||||||||||||||| Sbjct: 1984206 gcgcccgacgccgcagaacg 1984225
>dbj|AK046802.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B830011M21 product:ALPHA-2A ADRENERGIC RECEPTOR (ALPHA-2A ADRENOCEPTOR) (ALPHA-2AAR), full insert sequence Length = 3594 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gctgggcccggagcgcggcg 280 |||||||||||||||||||| Sbjct: 1628 gctgggcccggagcgcggcg 1647
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 acgacggcttcggcgacgac 81 |||||||||||||||||||| Sbjct: 1345234 acgacggcttcggcgacgac 1345215
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 tcggcgacgacaacggcagc 90 |||||||||||||||||||| Sbjct: 14207753 tcggcgacgacaacggcagc 14207772 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 cctcaagcgcccgacgccgc 58 |||||||||||||||||||| Sbjct: 7330408 cctcaagcgcccgacgccgc 7330389
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 tcggcgagcacggcggcgtg 186 |||||||||||||||||||| Sbjct: 9220794 tcggcgagcacggcggcgtg 9220775
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 12 cctcgccgccgcggagcccctcaccctcctca 43 |||||| | |||||||||| |||||||||||| Sbjct: 16549881 cctcgcgggcgcggagcccgtcaccctcctca 16549850
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 gcagaacgacggcttcggcg 76 |||||||||||||||||||| Sbjct: 4721384 gcagaacgacggcttcggcg 4721365
>gb|U79031.1|RRU79031 Rattus norvegicus alpha2D adrenergic receptor mRNA, complete cds Length = 1552 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gctgggcccggagcgcggcg 280 |||||||||||||||||||| Sbjct: 756 gctgggcccggagcgcggcg 775
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 tcggcgagcacggcggcgtg 186 |||||||||||||||||||| Sbjct: 32007 tcggcgagcacggcggcgtg 31988
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 cgagttcggcgagcacggcg 181 |||||||||||||||||||| Sbjct: 4297870 cgagttcggcgagcacggcg 4297889
>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0527E02 Length = 176826 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 12 cctcgccgccgcggagcccctcaccctcctca 43 |||||| | |||||||||| |||||||||||| Sbjct: 123296 cctcgcgggcgcggagcccgtcaccctcctca 123265
>dbj|AK120066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002C14, full insert sequence Length = 3160 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 tcggcgagcacggcggcgtg 186 |||||||||||||||||||| Sbjct: 769 tcggcgagcacggcggcgtg 788
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 ggcttcggcgacgacaacggcagc 90 ||||||||| |||||||||||||| Sbjct: 3355237 ggcttcggcaacgacaacggcagc 3355214 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 ctcaagcgcccgacgccgcagaac 63 ||||||||| |||||||||||||| Sbjct: 62316 ctcaagcgcgcgacgccgcagaac 62339
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 tcggcgagcacggcggcgtg 186 |||||||||||||||||||| Sbjct: 531009 tcggcgagcacggcggcgtg 531028
>ref|NM_002078.3| Homo sapiens golgi autoantigen, golgin subfamily a, 4 (GOLGA4), mRNA Length = 7717 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 cggcgacgacaacggcagca 91 |||||||||||||||||||| Sbjct: 52 cggcgacgacaacggcagca 33
>dbj|AP001728.1| Homo sapiens genomic DNA, chromosome 21q, section 72/105 Length = 340000 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgctggcgctggggcggcag 336 |||||||||||||||||||| Sbjct: 88096 tgctggcgctggggcggcag 88077
>gb|AC113491.17| Mus musculus chromosome 19, clone RP23-358H2, complete sequence Length = 211604 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 gctgggcccggagcgcggcg 280 |||||||||||||||||||| Sbjct: 146612 gctgggcccggagcgcggcg 146593
>dbj|AP001432.2| Homo sapiens genomic DNA, chromosome 21q, clone:CMP21-T1601, complete sequence Length = 102247 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgctggcgctggggcggcag 336 |||||||||||||||||||| Sbjct: 55491 tgctggcgctggggcggcag 55472
>dbj|AP006190.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-145L6, complete sequence Length = 176082 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 cggcgacgacaacggcagca 91 |||||||||||||||||||| Sbjct: 31761 cggcgacgacaacggcagca 31742
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 tcggcgacgacaacggcagc 90 |||||||||||||||||||| Sbjct: 14289755 tcggcgacgacaacggcagc 14289774 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 cctcaagcgcccgacgccgc 58 |||||||||||||||||||| Sbjct: 7400494 cctcaagcgcccgacgccgc 7400475
>dbj|AB209693.1| Homo sapiens mRNA for golgi autoantigen, golgin subfamily a, 4 variant protein Length = 7649 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 cggcgacgacaacggcagca 91 |||||||||||||||||||| Sbjct: 23 cggcgacgacaacggcagca 4
>ref|NM_012739.2| Rattus norvegicus adrenergic receptor, alpha 2a (Adra2a), mRNA Length = 1552 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gctgggcccggagcgcggcg 280 |||||||||||||||||||| Sbjct: 756 gctgggcccggagcgcggcg 775
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 ccggcggcggcactggccgcggcg 156 ||||||||||||| |||||||||| Sbjct: 308050 ccggcggcggcacgggccgcggcg 308073
>gb|M99377.1|MUSALP2ADB Mouse alpha-2 adrenergic receptor, complete cds Length = 1454 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gctgggcccggagcgcggcg 280 |||||||||||||||||||| Sbjct: 806 gctgggcccggagcgcggcg 825
>dbj|AP000151.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 3/16, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgctggcgctggggcggcag 336 |||||||||||||||||||| Sbjct: 57513 tgctggcgctggggcggcag 57494
>dbj|AP000010.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 3/13 Length = 100000 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgctggcgctggggcggcag 336 |||||||||||||||||||| Sbjct: 5168 tgctggcgctggggcggcag 5149
>dbj|D49782.1|STMAFR Streptomyces griseus DNA for A-factor receptor, complete cds Length = 1328 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 ggagctgggcccggagcgcggcga 281 ||||||||||| |||||||||||| Sbjct: 679 ggagctgggccaggagcgcggcga 702
>dbj|AB021882.1| Streptomyces griseus gene for ArpA, complete cds Length = 1601 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 ggagctgggcccggagcgcggcga 281 ||||||||||| |||||||||||| Sbjct: 819 ggagctgggccaggagcgcggcga 842 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,412,368 Number of Sequences: 3902068 Number of extensions: 2412368 Number of successful extensions: 65433 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62212 Number of HSP's gapped (non-prelim): 3221 length of query: 366 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 344 effective length of database: 17,147,199,772 effective search space: 5898636721568 effective search space used: 5898636721568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)