>NUP3_PENSQ (P24504) Nuclease PA3 (EC 3.1.3.6) (Endonuclease PA3)|
           (Deoxyribonuclease PA3)
          Length = 270

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 62/157 (39%), Positives = 76/157 (48%), Gaps = 5/157 (3%)
 Frame = +1

Query: 115 WGVDGHLIVCQIAQARLSDAAAKAVDDLLPSDAGGNLSSLCSWADKVRFRY--HWSAPLH 288
           WG  GH  V  +AQ  +S  AA     +L S +   L+S+ SWAD+ R      WSA LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 289 FIDVPDN---ECSYSYDRDCKDEEGVKGRCVAGAINNYTSQLLTYGXXXXXXXXXXXXXG 459
           FID  DN    C+  Y+RDC    G  G C   AI NYT ++                  
Sbjct: 61  FIDAEDNPPTNCNVDYERDC----GSSG-CSISAIANYTQRV------------SDSSLS 103

Query: 460 QYNLTEALLFLSHFMGDIHQPLHVGFASDKGGNTIDV 570
             N  EAL FL HF+GD+ QPLH   A   GGN I+V
Sbjct: 104 SENHAEALRFLVHFIGDMTQPLH-DEAYAVGGNKINV 139

>NUP1_PENCI (P24289) Nuclease P1 (EC 3.1.30.1) (Endonuclease P1)|
           (Deoxyribonuclease P1)
          Length = 270

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 62/157 (39%), Positives = 76/157 (48%), Gaps = 5/157 (3%)
 Frame = +1

Query: 115 WGVDGHLIVCQIAQARLSDAAAKAVDDLLPSDAGGNLSSLCSWADKVRFRY--HWSAPLH 288
           WG  GH  V  +AQ  +S  AA     +L S +   L+S+ SWAD+ R      WSA LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 289 FIDVPDN---ECSYSYDRDCKDEEGVKGRCVAGAINNYTSQLLTYGXXXXXXXXXXXXXG 459
           FID  DN    C+  Y+RDC    G  G C   AI NYT ++                  
Sbjct: 61  FIDAEDNPPTNCNVDYERDC----GSSG-CSISAIANYTQRV------------SDSSLS 103

Query: 460 QYNLTEALLFLSHFMGDIHQPLHVGFASDKGGNTIDV 570
             N  EAL FL HF+GD+ QPLH   A   GGN I+V
Sbjct: 104 SENHAEALRFLVHFIGDMTQPLH-DEAYAVGGNKINV 139

>NUS1_ASPOR (P24021) Nuclease S1 precursor (EC 3.1.30.1) (Endonuclease S1)|
           (Single-stranded-nucleate endonuclease)
           (Deoxyribonuclease S1)
          Length = 287

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 57/158 (36%), Positives = 75/158 (47%), Gaps = 5/158 (3%)
 Frame = +1

Query: 112 GWGVDGHLIVCQIAQARLSDAAAKAVDDLLPSDAGGNLSSLCSWADKVRF--RYHWSAPL 285
           GWG  GH  V  IAQ+ ++ +      ++L  D+   L+++ +WAD  ++     +S P 
Sbjct: 20  GWGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTDAGEFSKPY 79

Query: 286 HFIDVPDN---ECSYSYDRDCKDEEGVKGRCVAGAINNYTSQLLTYGXXXXXXXXXXXXX 456
           HFID  DN    C   YDRDC    G  G C   AI NYT+ LL                
Sbjct: 80  HFIDAQDNPPQSCGVDYDRDC----GSAG-CSISAIQNYTNILL-------------ESP 121

Query: 457 GQYNLTEALLFLSHFMGDIHQPLHVGFASDKGGNTIDV 570
                  AL F+ H +GDIHQPLH     + GGN IDV
Sbjct: 122 NGSEALNALKFVVHIIGDIHQPLH-DENLEAGGNGIDV 158


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,155,213
Number of Sequences: 219361
Number of extensions: 702093
Number of successful extensions: 1700
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1691
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)