>FHL1_SCHPO (O14270) Fork head transcription factor 1|
          Length = 743

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 356 ELARGEEQEPREAVAEPDPDSRPDT-DAEQKP 448
           EL +G+   P + V  PD +  PDT DA QKP
Sbjct: 261 ELKQGKSTSPSDTVLHPDLNGSPDTGDATQKP 292

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 464 PPRHEAASARRRCPGVSRGPAPRPPP 387
           PPR  + S RR  P + R  +P PPP
Sbjct: 604 PPRRRSPSPRRYSPPIQRRYSPSPPP 629

>WRIP1_HUMAN (Q96S55) ATPase WRNIP1 (Werner helicase-interacting protein 1)|
          Length = 665

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 26/102 (25%), Positives = 34/102 (33%)
 Frame = +2

Query: 149 DDQSDAAADVTLPALPTPAGENIVLSHGAPTPMLRLPSHRSTCXXXXXXXXXXXXGLARV 328
           DD  +  +  +  A PTP+G  ++            P  RS+               A  
Sbjct: 100 DDGGETESRESYDAPPTPSGARLIPD---------FPVARSSSPGRKGSGKRPAAAAA-- 148

Query: 329 HPAVDVVPAELARGEEQEPREAVAEPDPDSRPDTDAEQKPLH 454
             A    P      E QE  EAV + D D   D D E  P H
Sbjct: 149 --AGSASPRSWDEAEAQEEEEAVGDGDGDGDADADGEDDPGH 188

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 464 PPRHEAASARRRCPGVSRGPAPRPPP 387
           PPR  + S RR  P + R  +P PPP
Sbjct: 599 PPRRRSPSPRRYSPPIQRRYSPSPPP 624

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 464 PPRHEAASARRRCPGVSRGPAPRPPP 387
           PPR  + S RR  P + R  +P PPP
Sbjct: 585 PPRRRSPSPRRYSPPIQRRYSPSPPP 610

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 464 PPRHEAASARRRCPGVSRGPAPRPPP 387
           PPR  + S RR  P + R  +P PPP
Sbjct: 578 PPRRRSPSPRRYSPPIQRRYSPSPPP 603

>MOT8_HUMAN (P36021) Monocarboxylate transporter 8 (MCT 8) (X-linked|
           PEST-containing transporter) (MCT 7)
          Length = 613

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 374 EQEPREAVAEPDPDSRPDTDAEQKPL 451
           +QE +E V  P+P+S P+ + E +P+
Sbjct: 93  DQEQQEPVGSPEPESEPEPEPEPEPV 118

>SNX19_HUMAN (Q92543) Sorting nexin-19|
          Length = 992

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 326 VHPAVDVVPAELARGEEQEPREAVAEPDPDSRPDTDAEQ 442
           V   VD +     R E Q P E ++E + +S+P T+ ++
Sbjct: 681 VSAIVDTLKTAFPRSEPQSPTEELSEAETESKPQTEGKK 719

>SYTL1_MOUSE (Q99N80) Synaptotagmin-like protein 1 (Exophilin-7)|
          Length = 567

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 13/46 (28%)
 Frame = +2

Query: 347 VPAELARGEEQEPRE-------------AVAEPDPDSRPDTDAEQK 445
           VP++ + G+E+EP++              VAE DP+  P+  AEQ+
Sbjct: 163 VPSKASEGQEEEPQDHECELEAPGEGGVQVAEADPELDPEQKAEQE 208

>MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemotaxis protein)|
          Length = 657

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -3

Query: 177 TSAAASD*SSWVRRTALGGPWSSEVVSRTR 88
           T+AA  + ++ VRRTA G   +S+VVS TR
Sbjct: 386 TAAALDELTATVRRTAAGARQASDVVSTTR 415

>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
            mesenchymal modulator) (CReMM) (Chromatin remodeling
            factor CHROM1) (Peroxisomal proliferator-activated
            receptor A-inter
          Length = 2897

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 152  DQSDAAADVTLPALPTPAGENIVLSHGAPTPMLRLPSH 265
            D   AA + + P++PTP G  +   H   T M ++  H
Sbjct: 2302 DSPGAATEYSEPSVPTPPGAGVKEEHDQSTQMSKVKKH 2339

>Y1053_ARCFU (O29209) Hypothetical protein AF1053|
          Length = 269

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 332 PAVDVVPAELARGEEQEPREAVAEPDPDSRPDTDAEQKP 448
           P + VVPA++   E  +P   V +P+ ++ P+ + E +P
Sbjct: 76  PQIQVVPAQIP--EPPKPEPEVEQPETETGPEPEPEAEP 112

>CXA12_RAT (Q80XF7) Gap junction alpha-12 protein (Connexin-47) (Cx47)|
          Length = 440

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 452 EAASARRRCPGVSRGPAPRPPPWA 381
           +A   RR       GPAPRPPP A
Sbjct: 295 DAVRGRRGASAAGPGPAPRPPPCA 318


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,915,439
Number of Sequences: 219361
Number of extensions: 667411
Number of successful extensions: 3382
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3359
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)