>FER_THEMA (P46797) Ferredoxin|
          Length = 60

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 319 CIDCATCRWMAPEVFKRVDGMSAVAAQPSSEEQRTKALQALLSCPTASIHTDK 477
           CI C  C  + P+VF+  D   A   QP ++    K   A  SCPT +I  ++
Sbjct: 10  CIGCGVCENLCPDVFQLGDDGKAKVLQPETDLPCAK--DAADSCPTGAISVEE 60

>FER1_DESDN (P07485) Ferredoxin-1 (Ferredoxin I) (FdI)|
          Length = 59

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +1

Query: 307 VDHR-CIDCATCRWMAPEVFKRVDG--MSAVAAQPSSEEQRTKALQALLSCPTASI 465
           +DH  CI C +C  + PEVF  +DG   + V A  S+ E    A+ A   CP  +I
Sbjct: 4   IDHEECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAIDA---CPVEAI 56

>FER_THELI (P29604) Ferredoxin|
          Length = 59

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 319 CIDCATCRWMAPEVFKRVDGMSAVAAQPSSEEQRTKALQALLSCPTASI 465
           CI C  C  + P+VF+  D   A A    ++ +  K  +A  SCPT +I
Sbjct: 10  CIGCGVCASICPDVFEMDDDGKAKALVAETDLECAK--EAAESCPTGAI 56

>FAS2_RHOFA (P46374) Ferredoxin fas2|
          Length = 304

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 310 DHRCIDCATCRWMAPEVFKRV-DGMSAVAAQPSSEEQRTKALQALLSCPTASIHTDKPA 483
           + RC     C  +APEVF++  DG   +     S +  +    A  SCP  +I  ++ A
Sbjct: 7   ERRCFGSGQCVLVAPEVFEQSNDGTVTLLVDKPSPDNHSLVRAAARSCPATAIRFEENA 65

>TOIP2_RAT (Q6P752) Torsin-1A-interacting protein 2|
          Length = 578

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +3

Query: 345 DGAGGVQEGGRHVRRGGAAQLRGAEDQGTAGFALLPNSIDPHRQAGEG 488
           +GAG   E G H+    AA   GA++ G A   L  +S  P   AGEG
Sbjct: 152 EGAGEGGEAGAHLESSCAALPVGADEGGRANAHLESSSAAPTEGAGEG 199

>FER1_STRGO (P18324) Ferredoxin-1 (Fd-1)|
          Length = 68

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 319 CIDCATCRWMAPEVFKRVDG--MSAVAAQPSSEEQRTKALQALLSCPTASI 465
           C+    C   AP VF + D   ++ + A+P++++ R  A +A   CP+ ++
Sbjct: 11  CVGAGLCALTAPGVFDQDDDGIVTVLTAEPAADDDRRTAREAGHLCPSGAV 61

>PAK4_MOUSE (Q8BTW9) Serine/threonine-protein kinase PAK 4 (EC 2.7.11.1)|
           (p21-activated kinase 4) (PAK-4)
          Length = 593

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 2   TQLSNDLKLSSAQPTGRVRGCSAATAEFAPHSLASQLSPLS*VTGSPPWRSAFGPPRP 175
           T L+     SS++P  R RG + +     PH+   QL+P +    +P    A GPP P
Sbjct: 235 TGLAAPQSSSSSRPPTRARG-APSPGVLGPHASEPQLAPPARALAAPAVPPAPGPPGP 291

>TOIP2_MOUSE (Q8BYU6) Torsin-1A-interacting protein 2|
          Length = 502

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 345 DGAGGVQEGGRHVRRGGAAQLRGAEDQGTAGFALL 449
           +GAG   E   H+    AA   GA D+G AG  LL
Sbjct: 152 EGAGDRGEADEHLESSSAAPTEGAGDRGEAGQELL 186

>FBRL_DEBHA (Q6BQ34) Fibrillarin|
          Length = 329

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 348 GAGGVQ--EGGRHVRRGGAAQLRGAEDQGTAGFALLPNSIDPHRQAG 482
           G GG +   GGR   RGGA   RG    G  G A +   I+PHR AG
Sbjct: 53  GFGGDRGGRGGRGGPRGGARGGRGGARGGARGGAKV--VIEPHRHAG 97

>UL29_HCMVA (P16764) Hypothetical protein UL29|
          Length = 360

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 44  TGRVRGCSAATAEFAPHSLASQLSPL 121
           +GR +GCSAATA  +  S  S+L PL
Sbjct: 2   SGRRKGCSAATASSSSSSPPSRLPPL 27


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,830,044
Number of Sequences: 219361
Number of extensions: 862671
Number of successful extensions: 2803
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2800
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)