>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2161

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -1

Query: 304 LPPPRTAWTGCSRPKRR*ILALTPAADP 221
           LPPP+TAWT  SRP         PAA P
Sbjct: 383 LPPPKTAWTENSRPSE-----TEPAAPP 405

>PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein|
           (Polycystin-1L1) (Fragment)
          Length = 531

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 395 HDLEQQPDGRSASEHPSGDLLVPP*NKISRLAAAEDGV 282
           HD   +PD R  S HP+ DLL P  ++  R+AA+   V
Sbjct: 320 HDSSGRPDSRHPSPHPTSDLL-PWTDQAWRIAASSSAV 356

>RTN2_MOUSE (O70622) Reticulon-2 (Neuroendocrine-specific protein-like 1)|
           (NSP-like protein 1) (NSPLI)
          Length = 471

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +3

Query: 309 ADLVLWRNKKISGGVLAGATAIWLLFEVMEYHLLTLVGHCLILSLA---TLFLWSNVCIF 479
           ADL+ W++ + SG V  G  A  L   ++ + ++++  H  +L L    +L ++  V   
Sbjct: 273 ADLLYWKDTRTSGAVFTGLMASLLC--LLHFSIVSVAAHLALLGLCATISLRVYRKVLQA 330

Query: 480 IHKSPPNIP 506
           +H+     P
Sbjct: 331 VHRGDGTNP 339

>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2158

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 304 LPPPRTAWTGCSRPKRR*ILALTPAADP 221
           LPPP+TAWT  +RP        TP   P
Sbjct: 383 LPPPKTAWTENARPSETEPAPPTPKPPP 410

>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)|
           (NSP-like protein 1) (NSPLI)
          Length = 545

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +3

Query: 297 GGKPADLVLWRNKKISGGVLAGATAIWLLFEVMEYHLLTLVGHCLILSLA---TLFLWSN 467
           G K ADL+ W++ + SG V  G     L   ++ + ++++  H  +L L    +L ++  
Sbjct: 342 GSKVADLLYWKDTRTSGVVFTGLMVSLLC--LLHFSIVSVAAHLALLLLCGTISLRVYRK 399

Query: 468 VCIFIHK 488
           V   +H+
Sbjct: 400 VLQAVHR 406


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,296,506
Number of Sequences: 219361
Number of extensions: 681869
Number of successful extensions: 2412
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2410
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)