ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart37c08 |
|---|---|
| Clone Library Name | barley_pub |
>PRAF1_HUMAN (Q9UI14) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)| Length = 185 Score = 47.8 bits (112), Expect = 2e-05 Identities = 26/86 (30%), Positives = 38/86 (44%) Frame = +2 Query: 245 RPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNYTXXXXXXXXXXXXXXXXXXXILLG 424 RPW+ VD+ FSRP +L + RL RN+ Y++ NY + L Sbjct: 43 RPWSTFVDQQRFSRPRNLGELCQRLVRNVEYYQSNYV-FVFLGLILYCVVTSPMLLVALA 101 Query: 425 VLAAWCFLYIFRASDQPVALFGRTFS 502 V C++ R + + LFGR S Sbjct: 102 VFFGACYILYLRTLESKLVLFGREVS 127
>PRAF1_CANFA (Q8HY39) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)| Length = 185 Score = 47.0 bits (110), Expect = 4e-05 Identities = 28/96 (29%), Positives = 39/96 (40%) Frame = +2 Query: 215 ESARRSLSDRRPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNYTXXXXXXXXXXXXX 394 E R + RPW+ VD+ FSRP +L + RL RN+ Y++ NY Sbjct: 33 ERLERRRATIRPWSSFVDQRRFSRPRNLGELCQRLVRNVEYYQSNYV-FVFLGLILYCVV 91 Query: 395 XXXXXXILLGVLAAWCFLYIFRASDQPVALFGRTFS 502 + L V C++ R LFGR S Sbjct: 92 TSPMLLVALAVFFGACYILYLRTLQSKFVLFGREVS 127
>PRAF1_RAT (O35394) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)| Length = 185 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/86 (29%), Positives = 36/86 (41%) Frame = +2 Query: 245 RPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNYTXXXXXXXXXXXXXXXXXXXILLG 424 RPW VD+ FSRP ++ + RL RN+ Y++ NY + L Sbjct: 43 RPWGTFVDQQRFSRPRNVGELCQRLVRNVEYYQSNYV-FVFLGLILYCVVTSPMLLVALA 101 Query: 425 VLAAWCFLYIFRASDQPVALFGRTFS 502 V C++ R + LFGR S Sbjct: 102 VFFGACYILYLRTLQSKLVLFGREVS 127
>PRAF1_MOUSE (Q9Z0S9) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)| (Prenylin) Length = 185 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/86 (29%), Positives = 36/86 (41%) Frame = +2 Query: 245 RPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNYTXXXXXXXXXXXXXXXXXXXILLG 424 RPW VD+ FSRP ++ + RL RN+ Y++ NY + L Sbjct: 43 RPWGTFVDQQRFSRPRNVGELCQRLVRNVEYYQSNYV-FVFLGLILYCVVTSPMLLVALA 101 Query: 425 VLAAWCFLYIFRASDQPVALFGRTFS 502 V C++ R + LFGR S Sbjct: 102 VFFGACYILYLRTLQSKLVLFGREVS 127
>VNCN_PAVBO (P07295) Probable noncapsid protein NP1| Length = 213 Score = 32.3 bits (72), Expect = 1.0 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Frame = -1 Query: 537 EATMSPRSVSRSEKVRPKSATGWSEARKM*RKHQ-AARTPRRMRSEKGWA--RSEAASAK 367 E + SPR S R KS WSE R+ R +R+P R R E+ W RS + Sbjct: 2 ERSRSPRETG-STSSRDKSDADWSERRREERTRTWKSRSPIRARGERSWGSWRSREKNQS 60 Query: 366 ATTA 355 ++TA Sbjct: 61 SSTA 64
>PRA1_YEAST (P53633) Prenylated Rab acceptor 1| Length = 176 Score = 31.2 bits (69), Expect = 2.3 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%) Frame = +2 Query: 215 ESARRSLSDRRPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNYTXXXXXXXXXXXXX 394 +S + L+ R E + S+P + + SR+ NL YF NY Sbjct: 27 QSFQSKLATLRTPQEFFNFKKISKPQNFGEVQSRVAYNLKYFSSNYGLIIGCLSIYTLLT 86 Query: 395 XXXXXXILLGVLAAWCFLYIFRASDQPVALFGRTFSDRETLLGLI-VASLVAFFFTPVAS 571 +++ V+A + + ++ V FG +F + GL+ VA + F +P+++ Sbjct: 87 NLLLLFVIVLVVAGIVGINKLK-GEELVTPFG-SFKTNQLYTGLVCVAVPIGFLASPIST 144 Query: 572 LI 577 L+ Sbjct: 145 LL 146
>PRA1_SCHPO (Q9UUN5) PRA1-like protein| Length = 171 Score = 30.4 bits (67), Expect = 3.9 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = +2 Query: 203 SRISESARRSLSDRRPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNY 352 S I S + LS + E +D SRP + S+A SR+ N + F NY Sbjct: 16 SEIYASRAQYLSGFKSVGEFLDVRRISRPRNFSEAQSRISFNFSRFSSNY 65
>SON_MOUSE (Q9QX47) SON protein| Length = 2404 Score = 30.0 bits (66), Expect = 5.0 Identities = 20/61 (32%), Positives = 30/61 (49%) Frame = -1 Query: 555 KKKATSEATMSPRSVSRSEKVRPKSATGWSEARKM*RKHQAARTPRRMRSEKGWARSEAA 376 KK+ +S + S RS S K R +++ S ARK K ++ R+ R RS R + Sbjct: 1801 KKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSR 1860 Query: 375 S 373 S Sbjct: 1861 S 1861
>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding| protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) Length = 2426 Score = 30.0 bits (66), Expect = 5.0 Identities = 20/61 (32%), Positives = 30/61 (49%) Frame = -1 Query: 555 KKKATSEATMSPRSVSRSEKVRPKSATGWSEARKM*RKHQAARTPRRMRSEKGWARSEAA 376 KK+ +S + S RS S K R +++ S ARK K ++ R+ R RS R + Sbjct: 1816 KKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSR 1875 Query: 375 S 373 S Sbjct: 1876 S 1876
>PLCB3_HUMAN (Q01970) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 3 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-3) (PLC-beta-3) Length = 1234 Score = 29.6 bits (65), Expect = 6.6 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -3 Query: 508 AVGEGAAEERDGLVGGAEDVEEAPGGED 425 A EG R G +GGA DVE+ GED Sbjct: 999 AQAEGRCRLRPGALGGAADVEDTKEGED 1026
>BRO1_CRYNE (Q5KE13) Vacuolar protein-sorting protein BRO1 (BRO| domain-containing protein 1) Length = 957 Score = 29.3 bits (64), Expect = 8.6 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +1 Query: 13 PSRLLESTPRSAPDSAPHGFRADTAAPPPGHQP 111 PSR ++P AP P APPPGH P Sbjct: 888 PSRPTYASPPFAPQQPPMQSGHSPYAPPPGHAP 920 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.133 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,366,521 Number of Sequences: 219361 Number of extensions: 524088 Number of successful extensions: 1911 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1834 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1908 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
