ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart37c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC011477.5| Homo sapiens chromosome 19 clone CTC-559E9, compl... 40 0.72
2gb|AC025566.22| Homo sapiens 3 BAC RP11-501O2 (Roswell Park Canc... 40 0.72
3gb|AC020948.8| Homo sapiens chromosome 19 clone LLNLR-227D2, com... 40 0.72
4gb|AC010521.4|AC010521 Homo sapiens chromosome 19 clone LLNLR-26... 40 0.72
5emb|AL445483.13| Human DNA sequence from clone RP11-92G12 on chr... 38 2.9
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
7dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
8dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
9dbj|AK064221.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 2.9
10gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 38 2.9

>gb|AC011477.5| Homo sapiens chromosome 19 clone CTC-559E9, complete sequence
          Length = 178710

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     tccaggaggacttcatctcc 61
              ||||||||||||||||||||
Sbjct: 155727 tccaggaggacttcatctcc 155708



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>gb|AC025566.22| Homo sapiens 3 BAC RP11-501O2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 200398

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     aggctccaggaggacttcat 57
              ||||||||||||||||||||
Sbjct: 113540 aggctccaggaggacttcat 113521



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>gb|AC020948.8| Homo sapiens chromosome 19 clone LLNLR-227D2, complete sequence
          Length = 41779

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    tccaggaggacttcatctcc 61
             ||||||||||||||||||||
Sbjct: 16560 tccaggaggacttcatctcc 16541



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>gb|AC010521.4|AC010521 Homo sapiens chromosome 19 clone LLNLR-269E4, complete sequence
          Length = 39156

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  tccaggaggacttcatctcc 61
           ||||||||||||||||||||
Sbjct: 753 tccaggaggacttcatctcc 772



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>emb|AL445483.13| Human DNA sequence from clone RP11-92G12 on chromosome 1 Contains the
             KIF14 gene for kinesin family member 14, a novel gene
             (DKFZp564B1023) and a novel gene, complete sequence
          Length = 164008

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    agaggctccaggaggactt 54
             |||||||||||||||||||
Sbjct: 66644 agaggctccaggaggactt 66662



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 52       cttcatctcctcgctcccg 70
                |||||||||||||||||||
Sbjct: 12923475 cttcatctcctcgctcccg 12923457



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>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0073A18
          Length = 176755

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     cttcatctcctcgctcccg 70
              |||||||||||||||||||
Sbjct: 142957 cttcatctcctcgctcccg 142939



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>dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0688H12
          Length = 139279

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 52    cttcatctcctcgctcccg 70
             |||||||||||||||||||
Sbjct: 33118 cttcatctcctcgctcccg 33100



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>dbj|AK064221.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G01, full
            insert sequence
          Length = 2598

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   cttcatctcctcgctcccg 70
            |||||||||||||||||||
Sbjct: 2083 cttcatctcctcgctcccg 2101



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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 45      aggaggacttcatctcctc 63
               |||||||||||||||||||
Sbjct: 2724506 aggaggacttcatctcctc 2724488


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 616,044
Number of Sequences: 3902068
Number of extensions: 616044
Number of successful extensions: 40566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40524
Number of HSP's gapped (non-prelim): 42
length of query: 72
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 51
effective length of database: 17,151,101,840
effective search space: 874706193840
effective search space used: 874706193840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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