>UCRI_MAIZE (P49727) Ubiquinol-cytochrome c reductase iron-sulfur subunit,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein) (RISP)
          Length = 273

 Score =  194 bits (492), Expect = 2e-49
 Identities = 100/151 (66%), Positives = 110/151 (72%)
 Frame = +2

Query: 107 MLRVAGRRLSSSLSWRPAATVXXXXXXXXXXXXXXXXXXXXXYQRRFAIESPFFTAARGF 286
           MLRVAGRRLSSSLSWRPAA V                      Q RF+I+SPFF A+RGF
Sbjct: 1   MLRVAGRRLSSSLSWRPAAAVARGPLAGAGVPDRDDDSARGRSQPRFSIDSPFFVASRGF 60

Query: 287 SSAETLVPRNQDAGLVELPATVAALKNPNSKILYDQYNHERYPPGDPSKRAFAYFVLSGG 466
           SS ET+VPRNQDAGL +LPATVAA+KNPN K++YD+YNHERYPPGDPSKRAFAYFVLSGG
Sbjct: 61  SSTETVVPRNQDAGLADLPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFVLSGG 120

Query: 467 RFVYASXXXXXXXXXXXSMSAK*DVLALASL 559
           RF+YAS           SMSA  DVLALASL
Sbjct: 121 RFIYASLLRLLVLKFVLSMSASKDVLALASL 151

>UCRI2_TOBAC (P51132) Ubiquinol-cytochrome c reductase iron-sulfur subunit 2,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein 2) (RISP2)
          Length = 272

 Score =  127 bits (320), Expect = 2e-29
 Identities = 76/152 (50%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
 Frame = +2

Query: 107 MLRVAGRRLSSSLSWRPAATVXXXXXXXXXXXXXXXXXXXXXYQRRFAIESPFFTAARGF 286
           MLR+AGRR SS   W   +                            ++ S F    RGF
Sbjct: 1   MLRIAGRRASSLSRWPVRSVAPSSSAFISANHFSSDDDSSSPRSISPSLASVFLHHTRGF 60

Query: 287 SSAETLVPRNQDAGLV-ELPATVAALKNPNSKILYDQYNHERYPPGDPSKRAFAYFVLSG 463
           SS    V    D GLV +LP TVAA+KNP SKI+YD++NHERYPPGDPSKRAFAYFVL+G
Sbjct: 61  SSNS--VSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTG 118

Query: 464 GRFVYASXXXXXXXXXXXSMSAK*DVLALASL 559
           GRFVYAS           SMSA  DVLALASL
Sbjct: 119 GRFVYASLVRLLILKFVLSMSASKDVLALASL 150

>UCRI_SOLTU (P37841) Ubiquinol-cytochrome c reductase iron-sulfur subunit,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein) (RISP)
          Length = 265

 Score =  127 bits (319), Expect = 2e-29
 Identities = 78/151 (51%), Positives = 92/151 (60%)
 Frame = +2

Query: 107 MLRVAGRRLSSSLSWRPAATVXXXXXXXXXXXXXXXXXXXXXYQRRFAIESPFFTAARGF 286
           MLRVAGRRLSSS + R ++T                           ++ S F    RGF
Sbjct: 1   MLRVAGRRLSSSAA-RSSSTFFTRSSFTVTDDSSPARSPSP------SLTSSFLDQIRGF 53

Query: 287 SSAETLVPRNQDAGLVELPATVAALKNPNSKILYDQYNHERYPPGDPSKRAFAYFVLSGG 466
           SS  ++ P +Q   + +LPATVAA+KNP+SKI+YD  NHERYPPGDPSKRAFAYFVL+GG
Sbjct: 54  SS-NSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGG 112

Query: 467 RFVYASXXXXXXXXXXXSMSAK*DVLALASL 559
           RFVYAS           SMSA  DVLALASL
Sbjct: 113 RFVYASSVRLLILKFVLSMSASKDVLALASL 143

>UCRI3_TOBAC (P51133) Ubiquinol-cytochrome c reductase iron-sulfur subunit 3,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein 3) (RISP3)
          Length = 268

 Score =  127 bits (318), Expect = 3e-29
 Identities = 75/151 (49%), Positives = 91/151 (60%)
 Frame = +2

Query: 107 MLRVAGRRLSSSLSWRPAATVXXXXXXXXXXXXXXXXXXXXXYQRRFAIESPFFTAARGF 286
           MLR+AGR+LSSS + R ++                            ++ S F    RGF
Sbjct: 1   MLRIAGRKLSSSAATRSSSAFFTRNPFTFTDDSSSPARSPSPA----SLASQFLDQFRGF 56

Query: 287 SSAETLVPRNQDAGLVELPATVAALKNPNSKILYDQYNHERYPPGDPSKRAFAYFVLSGG 466
           SS  ++ P +Q   + +LPATVAA+KNP+SKI+YD  NHERYPPGDPSKRAFAYFVL+GG
Sbjct: 57  SS-NSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGG 115

Query: 467 RFVYASXXXXXXXXXXXSMSAK*DVLALASL 559
           RFVYAS           SMSA  DVLALASL
Sbjct: 116 RFVYASLVRLLILKFVLSMSASKDVLALASL 146

>UCRI5_TOBAC (P51135) Ubiquinol-cytochrome c reductase iron-sulfur subunit 5,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein 5) (RISP5)
          Length = 268

 Score =  126 bits (317), Expect = 4e-29
 Identities = 75/151 (49%), Positives = 91/151 (60%)
 Frame = +2

Query: 107 MLRVAGRRLSSSLSWRPAATVXXXXXXXXXXXXXXXXXXXXXYQRRFAIESPFFTAARGF 286
           MLR+AGR+LSSS + R ++                            ++ S F    RGF
Sbjct: 1   MLRIAGRKLSSSAAARSSSAFFTRNPFTFTDDSSSPTRSPSPT----SLASQFLDQFRGF 56

Query: 287 SSAETLVPRNQDAGLVELPATVAALKNPNSKILYDQYNHERYPPGDPSKRAFAYFVLSGG 466
           SS  ++ P +Q   + +LPATVAA+KNP+SKI+YD  NHERYPPGDPSKRAFAYFVL+GG
Sbjct: 57  SS-NSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGG 115

Query: 467 RFVYASXXXXXXXXXXXSMSAK*DVLALASL 559
           RFVYAS           SMSA  DVLALASL
Sbjct: 116 RFVYASLVRLLILKFVLSMSASKDVLALASL 146

>UCRI1_TOBAC (P49729) Ubiquinol-cytochrome c reductase iron-sulfur subunit 1,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein 1) (RISP1) (Fragment)
          Length = 258

 Score =  117 bits (294), Expect = 2e-26
 Identities = 66/105 (62%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
 Frame = +2

Query: 248 AIESPFFTAARGFSSAETLVPRNQDAGLV-ELPATVAALKNPNSKILYDQYNHERYPPGD 424
           ++ S F    RGFSS    V    D GLV +LP TVAA+KNP SKI+YD++NHERYPPGD
Sbjct: 34  SLASVFLHHTRGFSSNS--VSPAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGD 91

Query: 425 PSKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSAK*DVLALASL 559
           PSKRAFAYFVL+GGRFVYAS           SMSA  DVLALASL
Sbjct: 92  PSKRAFAYFVLTGGRFVYASLMRLLILKFVLSMSASKDVLALASL 136

>UCRI4_TOBAC (P51134) Ubiquinol-cytochrome c reductase iron-sulfur subunit 4,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein 4) (RISP4)
          Length = 236

 Score =  117 bits (292), Expect = 3e-26
 Identities = 65/105 (61%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
 Frame = +2

Query: 248 AIESPFFTAARGFSSAETLVPRNQDAGLV-ELPATVAALKNPNSKILYDQYNHERYPPGD 424
           ++ S  F+   GFSS    V    D GLV +LP TVAA+KNP SKI+YD++NHERYPPGD
Sbjct: 12  SVTSNSFSIISGFSSNS--VSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGD 69

Query: 425 PSKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSAK*DVLALASL 559
           PSKRAFAYFVL+GGRFVYAS           SMSA  DVLALASL
Sbjct: 70  PSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASL 114

>MBTP1_RAT (Q9WTZ3) Membrane-bound transcription factor site 1 protease|
           precursor (EC 3.4.21.-) (S1P endopeptidase) (Site-1
           protease) (Subtilisin/kexin isozyme 1) (SKI-1)
          Length = 1052

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 287 SSAETLVPRNQD-AGLVELPATVAALKNP--NSKILYDQYNHERYPPG 421
           S AET +    +    V+LP  V  +  P  + ++L+DQY++ RYPPG
Sbjct: 589 SPAETELKNGAEHTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPG 636

>MBTP1_MOUSE (Q9WTZ2) Membrane-bound transcription factor site 1 protease|
           precursor (EC 3.4.21.-) (S1P endopeptidase) (Site-1
           protease) (Subtilisin/kexin isozyme 1) (SKI-1)
           (Sterol-regulated luminal protease)
          Length = 1052

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 287 SSAET-LVPRNQDAGLVELPATVAALKNP--NSKILYDQYNHERYPPG 421
           S AET L    +    V+LP  V  +  P  + ++L+DQY++ RYPPG
Sbjct: 589 SPAETELHSGAEHTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPG 636

>MBTP1_HUMAN (Q14703) Membrane-bound transcription factor site 1 protease|
           precursor (EC 3.4.21.-) (S1P endopeptidase) (Site-1
           protease) (Subtilisin/kexin-isozyme 1) (SKI-1)
          Length = 1052

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 317 QDAGLVELPATVAALKNP--NSKILYDQYNHERYPPG 421
           +    V+LP  V  +  P  + ++L+DQY++ RYPPG
Sbjct: 600 EQTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPG 636

>MBTP1_CRIGR (Q9Z2A8) Membrane-bound transcription factor site 1 protease|
           precursor (EC 3.4.21.-) (S1P endopeptidase) (Site-1
           protease) (Subtilisin/kexin-isozyme 1) (SKI-1)
           (Sterol-regulated luminal protease)
          Length = 1052

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 287 SSAETLVPRNQD-AGLVELPATVAALKNP--NSKILYDQYNHERYPPG 421
           S AET      +    V+LP  V  +  P  + ++L+DQY++ RYPPG
Sbjct: 589 SPAETEAKNGAEHTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPG 636

>ISPD_CHLCV (Q824I4) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase|
           (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol
           synthase) (MEP cytidylyltransferase) (MCT)
          Length = 212

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +2

Query: 251 IESPFFTAARGFSSAE--TLVPRNQDAGLVELPATVAALKNPNSKILYDQ 394
           +++   +A   F+S E  TLV   Q A L+++P ++ + K+P  KI Y +
Sbjct: 154 VKTEILSAGLEFASREGITLVDDTQAAELLDIPVSLVSSKHPQIKITYPE 203

>TOP2_MIMIV (Q5UQE6) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)|
          Length = 1263

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +2

Query: 251 IESPFFTAARGFSSAETLVPRNQDAGLVELPATVAALKNPNSKILYDQYNHERYPPGDPS 430
           IES F        S +T  P+N+D     +    A  +  + KI  + YN + Y   DPS
Sbjct: 655 IESEFIEEESDIIS-DTYKPKNKDISEDAMTLAFAGGREDDRKIWINTYNPDNYL--DPS 711

Query: 431 KRAFAYF 451
           K+  +Y+
Sbjct: 712 KKRISYY 718

>DNAJ_MYCPU (Q98PI9) Chaperone protein dnaJ|
          Length = 377

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 311 RNQDAGLVELPATVAALKNPNSKILYDQYNHE 406
           +  +A + E+      L NP  K +YD+Y HE
Sbjct: 41  KESEAKMREINEAYEVLSNPEKKAIYDKYGHE 72

>SAPA_HAEIN (P45285) Peptide transport periplasmic protein sapA precursor|
          Length = 565

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +2

Query: 254 ESPFFTAARGFSSAETLVPRNQDAG-----LVELPATVAALKNPNSKILYDQYNHERYPP 418
           ++P+FT  R F++ + +   N+  G     L  L  T     NP  ++ ++Q    R+P 
Sbjct: 108 QTPWFTPTRDFNAEDVVFSINRVLGGHNTYLPTLAETNVTYSNPQYRVFHEQARKVRFPY 167

Query: 419 GDPSK 433
            D  K
Sbjct: 168 FDSIK 172


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,696,543
Number of Sequences: 219361
Number of extensions: 1159582
Number of successful extensions: 3582
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3575
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)