ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart37b02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (T... 205 7e-53
2PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4) 158 1e-38
3PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Pro... 152 5e-37
4PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (P... 152 5e-37
5PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (P... 152 5e-37
6PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (P... 150 3e-36
7PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4 149 6e-36
8PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (P... 144 2e-34
9PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (T... 123 4e-28
10PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B 61 2e-09
11PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteaso... 58 2e-08
12PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-bindi... 54 3e-07
13PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)... 54 3e-07
14PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteaso... 53 7e-07
15PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)... 52 1e-06
16PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase ... 52 2e-06
17PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog ... 51 2e-06
18PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog 51 3e-06
19PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog 51 3e-06
20PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog ... 50 5e-06
21PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog 49 1e-05
22PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteaso... 48 2e-05
23PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteaso... 47 3e-05
24PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteaso... 46 7e-05
25PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteaso... 46 9e-05
26PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteaso... 45 2e-04
27PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog 45 2e-04
28PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteaso... 45 2e-04
29PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteaso... 45 2e-04
30PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteaso... 45 2e-04
31PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteaso... 44 4e-04
32PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog ... 42 0.002
33PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteaso... 40 0.005
34PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease sub... 39 0.011
35PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Prote... 38 0.024
36PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Prote... 38 0.024
37PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Prote... 38 0.024
38PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteaso... 37 0.032
39PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteaso... 33 0.60 
>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding|
           protein homolog 2)
          Length = 448

 Score =  205 bits (522), Expect = 7e-53
 Identities = 106/127 (83%), Positives = 108/127 (85%)
 Frame = +2

Query: 203 AAPSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRP 382
           AAPSRVGRKQR+QKGPEAAARLPNVAP                   MEEEFVAAQERLRP
Sbjct: 36  AAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLLKLERVKDYLLMEEEFVAAQERLRP 95

Query: 383 TEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPG 562
           TE+KTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPG
Sbjct: 96  TEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPG 155

Query: 563 CSILMHN 583
           CSILMHN
Sbjct: 156 CSILMHN 162
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>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)|
          Length = 439

 Score =  158 bits (400), Expect = 1e-38
 Identities = 77/125 (61%), Positives = 96/125 (76%)
 Frame = +2

Query: 209 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 388
           P+RVG+K+RR KGP+AA +LP V P                   ME+EF+  QERL+P +
Sbjct: 29  PTRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQERLKPQD 88

Query: 389 EKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCS 568
           EK EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG E+YV ILSFVDKDQLEPGCS
Sbjct: 89  EKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCS 148

Query: 569 ILMHN 583
           +L+++
Sbjct: 149 VLLNH 153
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>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score =  152 bits (385), Expect = 5e-37
 Identities = 74/125 (59%), Positives = 96/125 (76%)
 Frame = +2

Query: 209 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 388
           P+RVG+K+++ KGP+AA++LP V P                   MEEEF+  QE+++P E
Sbjct: 30  PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE 89

Query: 389 EKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCS 568
           EK EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG E+YV ILSFVDKD LEPGCS
Sbjct: 90  EKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCS 149

Query: 569 ILMHN 583
           +L+++
Sbjct: 150 VLLNH 154
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>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score =  152 bits (385), Expect = 5e-37
 Identities = 74/125 (59%), Positives = 96/125 (76%)
 Frame = +2

Query: 209 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 388
           P+RVG+K+++ KGP+AA++LP V P                   MEEEF+  QE+++P E
Sbjct: 30  PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE 89

Query: 389 EKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCS 568
           EK EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG E+YV ILSFVDKD LEPGCS
Sbjct: 90  EKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCS 149

Query: 569 ILMHN 583
           +L+++
Sbjct: 150 VLLNH 154
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>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score =  152 bits (385), Expect = 5e-37
 Identities = 74/125 (59%), Positives = 96/125 (76%)
 Frame = +2

Query: 209 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 388
           P+RVG+K+++ KGP+AA++LP V P                   MEEEF+  QE+++P E
Sbjct: 30  PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE 89

Query: 389 EKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCS 568
           EK EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG E+YV ILSFVDKD LEPGCS
Sbjct: 90  EKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCS 149

Query: 569 ILMHN 583
           +L+++
Sbjct: 150 VLLNH 154
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>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score =  150 bits (378), Expect = 3e-36
 Identities = 73/125 (58%), Positives = 95/125 (76%)
 Frame = +2

Query: 209 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 388
           P+RVG+K+++ KGP+AA++ P V P                   MEEEF+  QE+++P E
Sbjct: 30  PTRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE 89

Query: 389 EKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCS 568
           EK EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG E+YV ILSFVDKD LEPGCS
Sbjct: 90  EKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCS 149

Query: 569 ILMHN 583
           +L+++
Sbjct: 150 VLLNH 154
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>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4|
          Length = 443

 Score =  149 bits (376), Expect = 6e-36
 Identities = 70/125 (56%), Positives = 95/125 (76%)
 Frame = +2

Query: 209 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 388
           PSR+G+K++  KGP+AA++LP V P                   ME+EF+  QERL+P E
Sbjct: 33  PSRIGKKKKGSKGPDAASKLPAVTPHARCRLKLLKSERIKDYLLMEQEFIQNQERLKPQE 92

Query: 389 EKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCS 568
           E+ EE+R+KVD+LRGTPM+VGSLEEIID+ HAIVS++VG E+YV I+SFVDK+QLEPGCS
Sbjct: 93  ERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCS 152

Query: 569 ILMHN 583
           +L+++
Sbjct: 153 VLLNH 157
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>PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (Protein mts2)|
          Length = 448

 Score =  144 bits (362), Expect = 2e-34
 Identities = 69/126 (54%), Positives = 95/126 (75%), Gaps = 1/126 (0%)
 Frame = +2

Query: 209 PSRVGRKQRR-QKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPT 385
           P+R GR++++ Q GP+A+A+LP V P                   MEEE+V  QERL+P 
Sbjct: 36  PTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQERLKPQ 95

Query: 386 EEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGC 565
           +E+T+E+R++VD++RGTPMSVG+LEEIID+ HAIVS++ GPEYYV I+SFVDKD LEPGC
Sbjct: 96  DERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDMLEPGC 154

Query: 566 SILMHN 583
           S+L+H+
Sbjct: 155 SVLLHH 160
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>PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (TAT-binding|
           homolog 5)
          Length = 437

 Score =  123 bits (308), Expect = 4e-28
 Identities = 59/124 (47%), Positives = 85/124 (68%)
 Frame = +2

Query: 212 SRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTEE 391
           S+ GRK+R+  GP  A +LPN+ P                   +EEEFV+  E L+P E+
Sbjct: 29  SKFGRKKRKG-GPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEEEFVSNSEILKPFEK 87

Query: 392 KTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSI 571
           K EE++ +++++RG P+S+G+LEEIID+ HAIV+S   P+YYV ILSFVDK+ LEPGCS+
Sbjct: 88  KQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSV 147

Query: 572 LMHN 583
           L+H+
Sbjct: 148 LLHH 151
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>PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B|
          Length = 414

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 25/68 (36%), Positives = 44/68 (64%)
 Frame = +2

Query: 377 RPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLE 556
           R  E++    + +V  ++  P+ +G   E +D++HAIV S+ G  YYV +LS +D++ L+
Sbjct: 62  RNLEKELLHAQEEVKRIQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLK 121

Query: 557 PGCSILMH 580
           PGCS+ +H
Sbjct: 122 PGCSVALH 129
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>PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 436

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 27/78 (34%), Positives = 48/78 (61%)
 Frame = +2

Query: 347 EEFVAAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGI 526
           +E    +E LR  E   E+ RS +  ++  P+ VG++EEI+D+   IV SS GP++   +
Sbjct: 70  DEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVIVKSSTGPKFVSNV 129

Query: 527 LSFVDKDQLEPGCSILMH 580
              VD+++LEPG ++ ++
Sbjct: 130 SPTVDRNELEPGANVALN 147
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>PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-binding protein 7)|
           (TBP-7)
          Length = 418

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
 Frame = +2

Query: 344 EEEFVAAQERLRPTEEKTEED-----RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGP 508
           E EF+  QE     E+K  +      + +V  ++  P+ +G   E +D++ AIV S+ G 
Sbjct: 50  ELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGS 109

Query: 509 EYYVGILSFVDKDQLEPGCSILMH 580
            YYV ILS +D++ L+P  S+ +H
Sbjct: 110 NYYVRILSTIDRELLKPNASVALH 133
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>PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7)
          Length = 418

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
 Frame = +2

Query: 344 EEEFVAAQERLRPTEEKTEED-----RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGP 508
           E EF+  QE     E+K  +      + +V  ++  P+ +G   E +D++ AIV S+ G 
Sbjct: 50  ELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGS 109

Query: 509 EYYVGILSFVDKDQLEPGCSILMH 580
            YYV ILS +D++ L+P  S+ +H
Sbjct: 110 NYYVRILSTIDRELLKPNASVALH 133
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>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 24/79 (30%), Positives = 51/79 (64%)
 Frame = +2

Query: 344 EEEFVAAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVG 523
           E++F+ + ER+R  E +    RS+V+ LR  P+ VG + +I+++   +V SS GP++ V 
Sbjct: 33  EKKFIES-ERIR-YEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVN 90

Query: 524 ILSFVDKDQLEPGCSILMH 580
              ++++++L+PG  + ++
Sbjct: 91  TSQYINEEELKPGARVALN 109
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>PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7) (CIP21)
          Length = 418

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
 Frame = +2

Query: 344 EEEFVAAQERLRPTEEKTEED-----RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGP 508
           E EF+  QE     E+K  +      + +V  ++  P+ +G   E +D++ AIV+S+ G 
Sbjct: 50  ELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVASTTGS 109

Query: 509 EYYVGILSFVDKDQLEPGCSILMH 580
            YYV ++S +D++ L+P  S+ +H
Sbjct: 110 NYYVRMVSTIDRELLKPNASVALH 133
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>PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase MS73)|
          Length = 415

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 24/80 (30%), Positives = 47/80 (58%)
 Frame = +2

Query: 341 MEEEFVAAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYV 520
           ++EE++  ++R    E    ++  +V  ++  P+ +G   E +D++  IV S+ G  YYV
Sbjct: 53  VQEEYIKDEQRNLKKEYLHAQE--EVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYV 110

Query: 521 GILSFVDKDQLEPGCSILMH 580
            ILS +D++ L+P  S+ +H
Sbjct: 111 RILSTIDRELLKPSASVALH 130
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>PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog (26S proteasome|
           AAA-ATPase subunit RPT3) (Regulatory particle triple-A
           ATPase subunit 3)
          Length = 408

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
 Frame = +2

Query: 350 EFVAAQERLRPTEEKTEED-----RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEY 514
           EF   QE     E+K  +      + +V  ++  P+ +G   E++D+++ IV S+ G  Y
Sbjct: 42  EFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNY 101

Query: 515 YVGILSFVDKDQLEPGCSILMH 580
           YV ILS ++++ L+P  S+ +H
Sbjct: 102 YVRILSTINRELLKPSASVALH 123
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>PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog|
          Length = 413

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 24/77 (31%), Positives = 48/77 (62%)
 Frame = +2

Query: 341 MEEEFVAAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYV 520
           ++EE+V  ++ L+    +    + +V  ++  P+ +G   E+ID+++AIV S+ G  YYV
Sbjct: 51  IQEEYV--KDELKNLRREHLRAQEEVKRIQSVPLVIGQFMEMIDQNNAIVGSTTGSNYYV 108

Query: 521 GILSFVDKDQLEPGCSI 571
            ILS ++++ L+P  S+
Sbjct: 109 RILSTINRELLKPSASV 125
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>PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog|
          Length = 423

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 25/80 (31%), Positives = 46/80 (57%)
 Frame = +2

Query: 341 MEEEFVAAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYV 520
           ++EE++  ++R    E    ++  K   ++  P+ +G   E ID++  IV SS G  Y V
Sbjct: 57  LQEEYIKDEQRSLKRELVRAQEEIK--RIQSVPLVIGQFMEAIDQNTGIVQSSTGSNYVV 114

Query: 521 GILSFVDKDQLEPGCSILMH 580
            ILS +D+++L+P  S+ +H
Sbjct: 115 RILSTLDREKLKPSSSVALH 134
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>PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog (YNT1 protein)|
           (TAT-binding homolog 2)
          Length = 428

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 25/80 (31%), Positives = 48/80 (60%)
 Frame = +2

Query: 341 MEEEFVAAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYV 520
           ++E+++  ++R    E K  ++  +V  ++  P+ +G   E ID++  IVSS+ G  Y V
Sbjct: 63  LQEDYIKDEQRHLKRELKRAQE--EVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVV 120

Query: 521 GILSFVDKDQLEPGCSILMH 580
            ILS +D++ L+P  S+ +H
Sbjct: 121 RILSTLDRELLKPSMSVALH 140
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>PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog|
          Length = 387

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 22/72 (30%), Positives = 41/72 (56%)
 Frame = +2

Query: 365 QERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDK 544
           ++ +   + +    R ++D ++  P+ +G   E ID S AIV S+ G  + V ILS VD+
Sbjct: 31  RKEIETLKREERHSREELDRVKSVPLIMGQFLEPIDSSTAIVGSTAGSNFVVRILSTVDR 90

Query: 545 DQLEPGCSILMH 580
           + L+P  ++ +H
Sbjct: 91  ELLKPNTTVALH 102
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>PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 410

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 19/79 (24%), Positives = 44/79 (55%)
 Frame = +2

Query: 344 EEEFVAAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVG 523
           +++ +   ER R  + + +  R +++  R  P+ + ++ E++D+    V S+ GP + + 
Sbjct: 42  KDKLLIENERTR-LDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVKSTTGPHFVIN 100

Query: 524 ILSFVDKDQLEPGCSILMH 580
              F+D+ QLEPG  + ++
Sbjct: 101 YSRFIDRKQLEPGARVALN 119
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>PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 396

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 26/73 (35%), Positives = 41/73 (56%)
 Frame = +2

Query: 359 AAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFV 538
           A +ERL   E +    RS++  LR  P   GS+ E++D+  AIV +  GP + V I  ++
Sbjct: 35  ADKERL---ERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWI 91

Query: 539 DKDQLEPGCSILM 577
           DK +L PG  + +
Sbjct: 92  DKSKLRPGTRVAL 104
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>PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 24/73 (32%), Positives = 42/73 (57%)
 Frame = +2

Query: 359 AAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFV 538
           A +ERL   E +    RS++  LR  P   G++ E++D+  AIV +  GP + V I  ++
Sbjct: 38  ADKERL---ERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWI 94

Query: 539 DKDQLEPGCSILM 577
           ++D+L PG  + +
Sbjct: 95  ERDKLRPGARVAL 107
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>PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = +2

Query: 359 AAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFV 538
           A +ERL   E +    RS++  LR  P   G++ E++DE  AIV +  GP + V I  ++
Sbjct: 38  ADKERL---ERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNYNGPRFVVRIAPWI 94

Query: 539 DKDQLEPGCSILM 577
           D+ +L PG  + +
Sbjct: 95  DRKKLRPGTRVAL 107
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>PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 407

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 19/65 (29%), Positives = 40/65 (61%)
 Frame = +2

Query: 386 EEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGC 565
           +++ E  + ++D LR  P+ +G++ + ++E  A+V SS GP + V +  FVD + + PG 
Sbjct: 52  KKENEILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGA 111

Query: 566 SILMH 580
            + ++
Sbjct: 112 RVCLN 116
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>PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog|
          Length = 389

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 23/79 (29%), Positives = 45/79 (56%)
 Frame = +2

Query: 341 MEEEFVAAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYV 520
           ++E F+  +E  +  + +    + +V  ++  P+ +G   E ID++ AIV S+ G  Y V
Sbjct: 25  LQEGFI--KEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVGSTTGSNYVV 82

Query: 521 GILSFVDKDQLEPGCSILM 577
            ILS +D++ L+P  S+ +
Sbjct: 83  RILSTLDRELLKPSASVAL 101
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>PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 421

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 17/65 (26%), Positives = 41/65 (63%)
 Frame = +2

Query: 386 EEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGC 565
           E +  + +S++D ++ +P+ +G++ ++I     IV SS GP++ V +  ++D+ +L PG 
Sbjct: 63  EREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGA 122

Query: 566 SILMH 580
            + ++
Sbjct: 123 KVALN 127
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>PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 397

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 23/73 (31%), Positives = 42/73 (57%)
 Frame = +2

Query: 359 AAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFV 538
           A +ERL   E +    R ++  LR  P   G++ E++D+  AIV +  GP + V I  ++
Sbjct: 36  ADKERL---ERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNYNGPRFVVRIAPWI 92

Query: 539 DKDQLEPGCSILM 577
           ++D+L+PG  + +
Sbjct: 93  ERDKLKPGARVAL 105
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>PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 420

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 17/65 (26%), Positives = 41/65 (63%)
 Frame = +2

Query: 386 EEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGC 565
           E +  + +S++D ++ +P+ +G++ ++I     IV SS GP++ V +  ++D+ +L PG 
Sbjct: 63  EREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGA 122

Query: 566 SILMH 580
            + ++
Sbjct: 123 KVALN 127
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>PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 430

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 19/58 (32%), Positives = 34/58 (58%)
 Frame = +2

Query: 407 RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMH 580
           R ++D +R  P+ VG++ + + E   +V SS GP + V +  FV+ D L PG  + ++
Sbjct: 81  RRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLN 138
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>PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog (TAT-binding|
           protein homolog 2)
          Length = 403

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 19/57 (33%), Positives = 34/57 (59%)
 Frame = +2

Query: 407 RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILM 577
           + +V  +R  P+ +G L E++D +  IV S+ G    V ILS +D++ L+P  S+ +
Sbjct: 61  QEEVKRIRSVPLLIGQLLEMVDSNTGIVQSTSGSTLCVRILSTIDRELLKPSASVAL 117
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>PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 409

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 18/66 (27%), Positives = 36/66 (54%)
 Frame = +2

Query: 386 EEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGC 565
           +++ E  ++++  L   P     + E+ID++  +V SS GP   V + + VD   L+PG 
Sbjct: 43  QKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARSLKPGA 102

Query: 566 SILMHN 583
            + ++N
Sbjct: 103 IVALNN 108
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>PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease subunit SUG2)|
           (Proteasomal cap subunit)
          Length = 437

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 17/78 (21%), Positives = 41/78 (52%)
 Frame = +2

Query: 344 EEEFVAAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVG 523
           +++    ++ +R  E+  ++  + +  L+     +G + + + E   IV +S GP Y VG
Sbjct: 71  DDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVG 130

Query: 524 ILSFVDKDQLEPGCSILM 577
           + + VD+ +L+ G  + +
Sbjct: 131 VRNSVDRSKLKKGVRVTL 148
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>PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6) (Conserved ATPase
           domain protein 44) (CADp44)
          Length = 389

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 19/71 (26%), Positives = 38/71 (53%)
 Frame = +2

Query: 365 QERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDK 544
           +E+L+   ++ E+  + +  L+     VG + + + E   IV ++ GP Y VG    +DK
Sbjct: 30  REQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDK 89

Query: 545 DQLEPGCSILM 577
            +L+PG  + +
Sbjct: 90  SKLKPGTRVAL 100
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>PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 19/71 (26%), Positives = 38/71 (53%)
 Frame = +2

Query: 365 QERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDK 544
           +E+L+   ++ E+  + +  L+     VG + + + E   IV ++ GP Y VG    +DK
Sbjct: 30  REQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDK 89

Query: 545 DQLEPGCSILM 577
            +L+PG  + +
Sbjct: 90  SKLKPGTRVAL 100
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>PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 19/71 (26%), Positives = 38/71 (53%)
 Frame = +2

Query: 365 QERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDK 544
           +E+L+   ++ E+  + +  L+     VG + + + E   IV ++ GP Y VG    +DK
Sbjct: 30  REQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDK 89

Query: 545 DQLEPGCSILM 577
            +L+PG  + +
Sbjct: 90  SKLKPGTRVAL 100
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>PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 393

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 16/80 (20%), Positives = 42/80 (52%)
 Frame = +2

Query: 341 MEEEFVAAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYV 520
           +EE+  + Q  +    ++    +++++ +   P+    + +++ +   +V SS GP   V
Sbjct: 23  LEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVV 82

Query: 521 GILSFVDKDQLEPGCSILMH 580
            I S +D+  ++PG S+ ++
Sbjct: 83  NIASHIDQKLIKPGISVALN 102
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>PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 392

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 18/79 (22%), Positives = 37/79 (46%)
 Frame = +2

Query: 341 MEEEFVAAQERLRPTEEKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYV 520
           +EE+  +  + L    +     + +++ L   P     + +I+ +   IV SS GP   V
Sbjct: 23  LEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIVLDILPDGKVIVRSSSGPNLIV 82

Query: 521 GILSFVDKDQLEPGCSILM 577
            + S +D  +L+PG  + +
Sbjct: 83  NVSSNIDIKKLKPGSLVAL 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,626,102
Number of Sequences: 219361
Number of extensions: 445123
Number of successful extensions: 1844
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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