>ref|XM_469163.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 687

 Score =  137 bits (69), Expect = 4e-29
 Identities = 205/248 (82%), Gaps = 3/248 (1%)
 Strand = Plus / Plus

                                                                       
Query: 134 gatgccgacgtgcgcgccggtgccgctcagcctgtcgccgtgcatcggctacctgttcgg 193
           ||||||||  ||| || ||| ||||||||||||||| |||||||||||||||  ||||||
Sbjct: 129 gatgccgagctgcccggcggcgccgctcagcctgtccccgtgcatcggctacgcgttcgg 188

                                                                       
Query: 194 ctccgggacggcggcgctgccgtcgtgctgctcgcagctccaggccttcttccagtccca 253
           |  |||| ||||| ||||| |||||||||||||  |||||| ||| ||||| | ||||||
Sbjct: 189 cgtcgggtcggcgacgctgtcgtcgtgctgctccgagctccgggcgttcttacggtccca 248

                                                                       
Query: 254 ggggccctgcctgtgcgccatgtccaagctcg-cgc--ccagctccttcggcctcgtcct 310
           ||| || ||||| ||||||  ||||| ||||| |||  || || | ||||||||  ||||
Sbjct: 249 gggtccgtgcctctgcgccgcgtccaggctcgccgccgccggcccgttcggcctgttcct 308

                                                                       
Query: 311 cggccaggtccagggcatgatccccaacgtgtgcaacctgcccaccgacccatgccatga 370
           ||||||||  |||| |||  |||||||||||||||||||||||| | |||| ||| ||||
Sbjct: 309 cggccaggcgcaggccatcgtccccaacgtgtgcaacctgcccagcaacccctgcgatga 368

                   
Query: 371 tgtcgccg 378
           ||| ||||
Sbjct: 369 tgtggccg 376

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 1e-26
 Identities = 186/224 (83%), Gaps = 3/224 (1%)
 Strand = Plus / Plus

                                                                            
Query: 134      gatgccgacgtgcgcgccggtgccgctcagcctgtcgccgtgcatcggctacctgttcgg 193
                ||||||||  ||| || ||| ||||||||||||||| |||||||||||||||  ||||||
Sbjct: 25828784 gatgccgagctgcccggcggcgccgctcagcctgtccccgtgcatcggctacgcgttcgg 25828843

                                                                            
Query: 194      ctccgggacggcggcgctgccgtcgtgctgctcgcagctccaggccttcttccagtccca 253
                |  |||| ||||| ||||| |||||||||||||  |||||| ||| ||||| | ||||||
Sbjct: 25828844 cgtcgggtcggcgacgctgtcgtcgtgctgctccgagctccgggcgttcttacggtccca 25828903

                                                                            
Query: 254      ggggccctgcctgtgcgccatgtccaagctcg-cgc--ccagctccttcggcctcgtcct 310
                ||| || ||||| ||||||  ||||| ||||| |||  || || | ||||||||  ||||
Sbjct: 25828904 gggtccgtgcctctgcgccgcgtccaggctcgccgccgccggcccgttcggcctgttcct 25828963

                                                            
Query: 311      cggccaggtccagggcatgatccccaacgtgtgcaacctgccca 354
                ||||||||  |||| |||  ||||||||||||||||||||||||
Sbjct: 25828964 cggccaggcgcaggccatcgtccccaacgtgtgcaacctgccca 25829007

>gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete
             sequence
          Length = 190834

 Score =  129 bits (65), Expect = 1e-26
 Identities = 186/224 (83%), Gaps = 3/224 (1%)
 Strand = Plus / Minus

                                                                         
Query: 134   gatgccgacgtgcgcgccggtgccgctcagcctgtcgccgtgcatcggctacctgttcgg 193
             ||||||||  ||| || ||| ||||||||||||||| |||||||||||||||  ||||||
Sbjct: 16112 gatgccgagctgcccggcggcgccgctcagcctgtccccgtgcatcggctacgcgttcgg 16053

                                                                         
Query: 194   ctccgggacggcggcgctgccgtcgtgctgctcgcagctccaggccttcttccagtccca 253
             |  |||| ||||| ||||| |||||||||||||  |||||| ||| ||||| | ||||||
Sbjct: 16052 cgtcgggtcggcgacgctgtcgtcgtgctgctccgagctccgggcgttcttacggtccca 15993

                                                                         
Query: 254   ggggccctgcctgtgcgccatgtccaagctcg-cgc--ccagctccttcggcctcgtcct 310
             ||| || ||||| ||||||  ||||| ||||| |||  || || | ||||||||  ||||
Sbjct: 15992 gggtccgtgcctctgcgccgcgtccaggctcgccgccgccggcccgttcggcctgttcct 15933

                                                         
Query: 311   cggccaggtccagggcatgatccccaacgtgtgcaacctgccca 354
             ||||||||  |||| |||  ||||||||||||||||||||||||
Sbjct: 15932 cggccaggcgcaggccatcgtccccaacgtgtgcaacctgccca 15889

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 1e-26
 Identities = 186/224 (83%), Gaps = 3/224 (1%)
 Strand = Plus / Plus

                                                                            
Query: 134      gatgccgacgtgcgcgccggtgccgctcagcctgtcgccgtgcatcggctacctgttcgg 193
                ||||||||  ||| || ||| ||||||||||||||| |||||||||||||||  ||||||
Sbjct: 25920093 gatgccgagctgcccggcggcgccgctcagcctgtccccgtgcatcggctacgcgttcgg 25920152

                                                                            
Query: 194      ctccgggacggcggcgctgccgtcgtgctgctcgcagctccaggccttcttccagtccca 253
                |  |||| ||||| ||||| |||||||||||||  |||||| ||| ||||| | ||||||
Sbjct: 25920153 cgtcgggtcggcgacgctgtcgtcgtgctgctccgagctccgggcgttcttacggtccca 25920212

                                                                            
Query: 254      ggggccctgcctgtgcgccatgtccaagctcg-cgc--ccagctccttcggcctcgtcct 310
                ||| || ||||| ||||||  ||||| ||||| |||  || || | ||||||||  ||||
Sbjct: 25920213 gggtccgtgcctctgcgccgcgtccaggctcgccgccgccggcccgttcggcctgttcct 25920272

                                                            
Query: 311      cggccaggtccagggcatgatccccaacgtgtgcaacctgccca 354
                ||||||||  |||| |||  ||||||||||||||||||||||||
Sbjct: 25920273 cggccaggcgcaggccatcgtccccaacgtgtgcaacctgccca 25920316

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 374     cgccggggcgagcaattcgaccg 396
               |||||||||||||||||||||||
Sbjct: 3909855 cgccggggcgagcaattcgaccg 3909833

>gb|AC091749.8| Oryza sativa chromosome 10 BAC OSJNBb0008A05 genomic sequence, complete
             sequence
          Length = 150465

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 3     tcaatccaatccaacccattcca 25
             |||||||||||||||||||||||
Sbjct: 15988 tcaatccaatccaacccattcca 16010

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 3       tcaatccaatccaacccattcca 25
               |||||||||||||||||||||||
Sbjct: 8760916 tcaatccaatccaacccattcca 8760938

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 3       tcaatccaatccaacccattcca 25
               |||||||||||||||||||||||
Sbjct: 8766055 tcaatccaatccaacccattcca 8766077

>dbj|AK155556.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630323L01
            product:unc-93 homolog B (C. elegans), full insert
            sequence
          Length = 2223

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 250  cccaggggccctgcctgtgcg 270
            |||||||||||||||||||||
Sbjct: 1748 cccaggggccctgcctgtgcg 1728

>gb|AF096929.1|AF096929 Rhodococcus erythropolis hypothetical repressor protein KstR (kstR)
            and 3-ketosteroid dehydrogenase (kstD1) genes, complete
            cds
          Length = 2398

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 203  ggcggcgctgccgtcgtgctgctcg 227
            |||||||||||||||| ||||||||
Sbjct: 1698 ggcggcgctgccgtcgggctgctcg 1674

>emb|AL591782.1|SME591782 Sinorhizobium meliloti 1021 complete chromosome; segment 1/12
          Length = 260050

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 308   cctcggccaggtccagggcat 328
             |||||||||||||||||||||
Sbjct: 30505 cctcggccaggtccagggcat 30525

>ref|NM_103863.2| Arabidopsis thaliana PAB8; RNA binding / translation initiation
           factor AT1G49760 (PAB8) mRNA, complete cds
          Length = 2570

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 511 gtgctgctgcggctgaagct 530
           ||||||||||||||||||||
Sbjct: 316 gtgctgctgcggctgaagct 335

>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 205    cggcgctgccgtcgtgctgctcgc 228
              |||||| |||||||||||||||||
Sbjct: 855980 cggcgcggccgtcgtgctgctcgc 855957

>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
          Length = 1130447

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    gccctgcctgtgcgccatgt 276
              ||||||||||||||||||||
Sbjct: 418380 gccctgcctgtgcgccatgt 418361



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    gccctgcctgtgcgccatgt 276
              ||||||||||||||||||||
Sbjct: 408890 gccctgcctgtgcgccatgt 408909



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    gccctgcctgtgcgccatgt 276
              ||||||||||||||||||||
Sbjct: 384512 gccctgcctgtgcgccatgt 384531

>ref|XM_368585.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
            (MG00659.4) partial mRNA
          Length = 2310

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 486  accacgacatcgacgacccc 505
            ||||||||||||||||||||
Sbjct: 1733 accacgacatcgacgacccc 1752

>gb|AC131114.3| Mus musculus BAC clone RP24-212G16 from chromosome 19, complete
             sequence
          Length = 160122

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 344   caacctgcccaccgacccatgcca 367
             ||||||||||||| ||||||||||
Sbjct: 14053 caacctgcccacccacccatgcca 14076

>gb|AC127556.4| Mus musculus BAC clone RP24-344J6 from chromosome 19, complete sequence
          Length = 214042

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 344   caacctgcccaccgacccatgcca 367
             ||||||||||||| ||||||||||
Sbjct: 11419 caacctgcccacccacccatgcca 11396

>ref|XM_540443.2| PREDICTED: Canis familiaris similar to Envoplakin (210 kDa
            paraneoplastic pemphigus antigen) (p210) (210 kDa
            cornified envelope precursor protein) (LOC483324), mRNA
          Length = 6338

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 441  gcggcacctccggcagcggc 460
            ||||||||||||||||||||
Sbjct: 4662 gcggcacctccggcagcggc 4681

>emb|AL670008.1|NCB13O8 Neurospora crassa DNA linkage group V BAC contig B13O8
          Length = 80765

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   ctcagcctgtcgccgtgcat 178
             ||||||||||||||||||||
Sbjct: 53070 ctcagcctgtcgccgtgcat 53051

>gb|AC015802.21| Homo sapiens chromosome 17, clone RP11-666A8, complete sequence
          Length = 205753

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   cggcagcggccactcctgcc 470
             ||||||||||||||||||||
Sbjct: 33307 cggcagcggccactcctgcc 33288

>gb|AY064622.1| Arabidopsis thaliana putative Poly-A Binding Protein (At1g49760;
           F14J22.3) mRNA, complete cds
          Length = 2091

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 511 gtgctgctgcggctgaagct 530
           ||||||||||||||||||||
Sbjct: 56  gtgctgctgcggctgaagct 75

>gb|AF370517.1|AF370517 Arabidopsis thaliana Putative Poly-A Binding Protein (F14J22.3)
           mRNA, complete cds
          Length = 2509

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 511 gtgctgctgcggctgaagct 530
           ||||||||||||||||||||
Sbjct: 316 gtgctgctgcggctgaagct 335

>gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14J22 genomic sequence, complete
             sequence
          Length = 104679

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 511   gtgctgctgcggctgaagct 530
             ||||||||||||||||||||
Sbjct: 20061 gtgctgctgcggctgaagct 20042

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 306     gtcctcggccaggtccaggg 325
               ||||||||||||||||||||
Sbjct: 5847073 gtcctcggccaggtccaggg 5847054



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 388     attcgaccgacgactcgacg 407
               ||||||||||||||||||||
Sbjct: 4757562 attcgaccgacgactcgacg 4757581

>gb|AC116052.6| Mus musculus BAC clone RP23-291E18 from 6, complete sequence
          Length = 195163

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aatcaatccaatccaaccca 20
              ||||||||||||||||||||
Sbjct: 117547 aatcaatccaatccaaccca 117528


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,383,940
Number of Sequences: 3902068
Number of extensions: 3383940
Number of successful extensions: 78521
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77680
Number of HSP's gapped (non-prelim): 841
length of query: 531
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 508
effective length of database: 17,143,297,704
effective search space: 8708795233632
effective search space used: 8708795233632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)