Clone Name | bart37a10 |
---|---|
Clone Library Name | barley_pub |
>ARFJ_ARATH (Q9SKN5) Auxin response factor 10| Length = 693 Score = 42.7 bits (99), Expect = 7e-04 Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 14/128 (10%) Frame = +1 Query: 55 GGREGRTASSSPARPRFGGICASRARHAQFGIS----LSDLHL------NKLQS-SLLPH 201 GG E S+ GI +R FG LSDL+L NKL S ++ Sbjct: 426 GGGESMCYLSNDNNNAPAGIQGARQAQQLFGSPSPSLLSDLNLSSYTGNNKLHSPAMFLS 485 Query: 202 GLHQVDHGGQQRIAAGLIIGHQSAQDDISCMLTIGNH---QNNKKSDVKKASPQLMLFGK 372 + H Q R + ++ISC LT+GN Q+ KKS + Q +LFG+ Sbjct: 486 SFNPRHHHYQARDSEN--------SNNISCSLTMGNPAMVQDKKKSVGSVKTHQFVLFGQ 537 Query: 373 PILTEQQI 396 PILTEQQ+ Sbjct: 538 PILTEQQV 545
>ARFP_ARATH (Q93YR9) Auxin response factor 16| Length = 670 Score = 37.4 bits (85), Expect = 0.028 Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Frame = +1 Query: 133 HAQFGISLSDLH---LNKLQSSLLPHGLHQVDHGGQQRIAAGLIIGHQSAQDDISCMLTI 303 H +G+S SDLH LN+ P L G + I + + C LT+ Sbjct: 453 HQYYGLSSSDLHHYYLNRPPPPPPPSSLQLSPSLGLRNI--------DTKNEKGFCFLTM 504 Query: 304 GNHQNNKKSDVKKASPQLMLFGKPILTEQQITLGNSRGFSPSAARKSTSDMSAEKSANNS 483 G N D K ++LFGK IL E+Q+ + + ST + EK + Sbjct: 505 GTTPCN---DTKSKKSHIVLFGKLILPEEQL-----------SEKGSTDTANIEK----T 546 Query: 484 DIPSPQSNQNG 516 I S SNQNG Sbjct: 547 QISSGGSNQNG 557
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 32.3 bits (72), Expect = 0.90 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +1 Query: 67 GRTASSSPARPRFGGICASRARHAQFGISLSDLHLNKLQSSLLPHGL 207 G ++S++PA P G + R +H L +H ++QS L PH L Sbjct: 36 GYSSSTAPAAPSSSGFMSFREQHLAQLQQLQQMHQKQMQSVLQPHHL 82
>MDHC_FELCA (Q7YRU4) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 32.0 bits (71), Expect = 1.2 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 11/100 (11%) Frame = +1 Query: 205 LHQVDHGGQQRIAAGLIIGHQSAQDDISCMLTIGNHQNNKKSDVKKASPQLMLFGKPI-- 378 L ++DH R A + + DD+ ++ GNH + + DV A ++ L GK + Sbjct: 154 LTRLDHN---RAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVSHA--KVKLHGKEVGV 208 Query: 379 ---------LTEQQITLGNSRGFSPSAARKSTSDMSAEKS 471 L + IT RG + ARK +S MSA K+ Sbjct: 209 YDALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKA 248
>MDHC_BOVIN (Q3T145) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 31.6 bits (70), Expect = 1.5 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 11/100 (11%) Frame = +1 Query: 205 LHQVDHGGQQRIAAGLIIGHQSAQDDISCMLTIGNHQNNKKSDVKKASPQLMLFGKPI-- 378 L ++DH R A + + DD+ ++ GNH + + DV A +L GK + Sbjct: 154 LTRLDHN---RAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQ--GKEVGV 208 Query: 379 ---------LTEQQITLGNSRGFSPSAARKSTSDMSAEKS 471 L + IT RG + ARK +S MSA K+ Sbjct: 209 YEALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKA 248
>MDHC_XENLA (Q6PAB3) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 334 Score = 31.6 bits (70), Expect = 1.5 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 11/100 (11%) Frame = +1 Query: 205 LHQVDHGGQQRIAAGLIIGHQSAQDDISCMLTIGNHQNNKKSDVKKASPQLMLFGKPI-- 378 L ++DH R A + + A DD+ ++ GNH + + D AS + L GK + Sbjct: 155 LTRLDHN---RAKAQIALKLNVASDDVKNVIIWGNHSSTQYPDASHAS--VTLQGKDVGA 209 Query: 379 ---------LTEQQITLGNSRGFSPSAARKSTSDMSAEKS 471 L IT RG + ARK +S MSA K+ Sbjct: 210 FEAVKNDDWLKGGFITTVQQRGAAVIKARKLSSAMSAAKA 249
>MDHC_XENTR (Q6DIY9) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 334 Score = 30.8 bits (68), Expect = 2.6 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 11/100 (11%) Frame = +1 Query: 205 LHQVDHGGQQRIAAGLIIGHQSAQDDISCMLTIGNHQNNKKSDVKKASPQLMLFGKPI-- 378 L ++DH R + + A DD+ ++ GNH + + D A+ L GK + Sbjct: 155 LTRLDHN---RAKGQIALKLNVASDDVKNVIIWGNHSSTQYPDASHATVNLQ--GKDVGA 209 Query: 379 ---------LTEQQITLGNSRGFSPSAARKSTSDMSAEKS 471 L + IT RG + ARK +S MSA K+ Sbjct: 210 FEAVKNDDWLKGEFITTVQQRGAAVIKARKLSSAMSAAKA 249
>MDHC_RAT (O88989) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.8 bits (68), Expect = 2.6 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 11/79 (13%) Frame = +1 Query: 277 DDISCMLTIGNHQNNKKSDVKKASPQLMLFGKPI-----------LTEQQITLGNSRGFS 423 DD+ ++ GNH + + DV A +L GK + L + IT RG + Sbjct: 175 DDVKNVIIWGNHSSTQYPDVNHAKVKLQ--GKEVGVYEALKDDSWLKGEFITTVQQRGAA 232 Query: 424 PSAARKSTSDMSAEKSANN 480 ARK +S MSA K+ ++ Sbjct: 233 VIKARKLSSAMSAAKAISD 251
>Y674_TREPA (O83680) Hypothetical protein TP0674| Length = 202 Score = 30.8 bits (68), Expect = 2.6 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -1 Query: 459 AHIRGALPSSRWRETPRVT*SDLLLSEYGLSKEHQLG 349 A RGALPSS+ PRV+ ++ L+ YGL + G Sbjct: 48 ARRRGALPSSQAAAAPRVSLMEVALARYGLFDKDAAG 84
>MDHC_MOUSE (P14152) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.4 bits (67), Expect = 3.4 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 11/76 (14%) Frame = +1 Query: 277 DDISCMLTIGNHQNNKKSDVKKASPQLMLFGKPI-----------LTEQQITLGNSRGFS 423 DD+ ++ GNH + + DV A +L GK + L + IT RG + Sbjct: 175 DDVKNVIIWGNHSSTQYPDVNHAKVKLQ--GKEVGVYEALKDDSWLKGEFITTVQQRGAA 232 Query: 424 PSAARKSTSDMSAEKS 471 ARK +S MSA K+ Sbjct: 233 VIKARKLSSAMSAAKA 248
>MDHC_MESCR (O24047) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37)| Length = 332 Score = 30.4 bits (67), Expect = 3.4 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 9/74 (12%) Frame = +1 Query: 280 DISCMLTIGNHQNNKKSDVKKASPQLMLFGKPI---------LTEQQITLGNSRGFSPSA 432 D+ ++ GNH + + DV A+ + KP+ L + IT RG + Sbjct: 178 DVKNVIIWGNHSSTQYPDVNHATVKTQGVDKPVRELVADDAWLNGEFITTVQQRGAAIIK 237 Query: 433 ARKSTSDMSAEKSA 474 ARK +S +SA SA Sbjct: 238 ARKLSSALSAASSA 251
>MDHC_MAIZE (Q08062) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37)| Length = 332 Score = 30.4 bits (67), Expect = 3.4 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%) Frame = +1 Query: 280 DISCMLTIGNHQNNKKSDVKKASPQLMLFGKPI---------LTEQQITLGNSRGFSPSA 432 D+ ++ GNH +++ DV A+ + KP+ L + IT RG + Sbjct: 178 DVKNVIIWGNHSSSQYPDVNHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIK 237 Query: 433 ARKSTSDMSAEKSA 474 ARK +S +SA SA Sbjct: 238 ARKFSSALSAASSA 251
>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)| (ZAP113) Length = 1951 Score = 30.4 bits (67), Expect = 3.4 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +1 Query: 67 GRTASSSPARPRFGGICASRARHAQFGISLSDLHLNKLQSSLLPHGL 207 G ++S++PA P G + R +H L +H ++Q L PH L Sbjct: 35 GYSSSTTPAAPSSSGFMSFREQHLAQLQQLQQMHQKQMQCVLQPHHL 81
>ZEP2_RAT (Q00900) Human immunodeficiency virus type I enhancer-binding protein| 2 homolog (DNA-binding protein AGIE-BP1) (Angiotensinogen gene-inducible enhancer-binding protein 1) (Myc intron-binding protein 1) Length = 2437 Score = 30.0 bits (66), Expect = 4.5 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = +1 Query: 61 REGRTASSSPARPRFGGICASRARHAQFGI--SLSDLHLNKLQSSLLPHGLHQVDHGGQQ 234 RE + S +P R +F G SR + I + SD+ ++ SSL G Q D G + Sbjct: 1533 REILSGSRAPPRRKFSGPSESRESSDELDIDETSSDMSMSPQSSSLPTGGSQQEDEGKAR 1592 Query: 235 RIAAGLII 258 ++ +++ Sbjct: 1593 KLPVSMLV 1600
>POM1_SCHPO (Q09690) Dual specificity protein kinase pom1 (EC 2.7.12.1)| Length = 1087 Score = 30.0 bits (66), Expect = 4.5 Identities = 21/86 (24%), Positives = 35/86 (40%) Frame = +1 Query: 262 HQSAQDDISCMLTIGNHQNNKKSDVKKASPQLMLFGKPILTEQQITLGNSRGFSPSAARK 441 HQ + +IS LT + ++ S ++ F K + QITL N + + Sbjct: 284 HQHPKANISGSLTKSSSESKNLSTIQSPLKTSNSFFKELSPHSQITLSNVKNNHSHVGSQ 343 Query: 442 STSDMSAEKSANNSDIPSPQSNQNGT 519 + S A S +++ P N N T Sbjct: 344 TKSHSFATPSVFDNNKPVSSDNHNNT 369
>SCM_DROME (Q9VHA0) Polycomb protein Scm (Sex comb on midleg protein)| Length = 877 Score = 30.0 bits (66), Expect = 4.5 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%) Frame = +1 Query: 316 NNKKSDVKKASPQLMLFGKPILTEQQITLGNSRGFSPSA-------ARKSTSDMSAEKSA 474 + K+ + A+P P+L +++ NS SPS A KS + ++ S Sbjct: 536 SRKRQLTQSATPP----SSPVLADKRNRQSNSATTSPSEKIIKQELAVKSPVESKSKTST 591 Query: 475 NNSDIPSPQSNQNGTMKN 528 NN P+ Q N N ++ N Sbjct: 592 NNGKEPASQQNSNHSLNN 609
>KOE5_YEAST (Q08217) Probable serine/threonine-protein kinase YOL045W (EC| 2.7.11.1) Length = 1101 Score = 30.0 bits (66), Expect = 4.5 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 13/71 (18%) Frame = +1 Query: 373 PILTEQQITLGNSRGFSPSAARKSTS-------------DMSAEKSANNSDIPSPQSNQN 513 P+L E +I + SRG S ++++KS+ +S+ ++ +NSD + N Sbjct: 668 PMLKENEIDVVGSRGSSSASSKKSSEKIPVNTLKAMADLSISSAETISNSDDEVDLNQVN 727 Query: 514 GTMKNLSCGGV 546 ++ SCG V Sbjct: 728 EKLRETSCGKV 738
>MDHC_PIG (P11708) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 29.6 bits (65), Expect = 5.9 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 9/98 (9%) Frame = +1 Query: 205 LHQVDHGGQQRIAAGLIIGHQSAQDDISCMLTIGNHQNNKKSDVKKASPQLMLFGKPI-- 378 L ++DH R A + + DD+ ++ GNH + + DV A +L + Sbjct: 154 LTRLDHN---RAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYE 210 Query: 379 -------LTEQQITLGNSRGFSPSAARKSTSDMSAEKS 471 L + IT RG + ARK +S MSA K+ Sbjct: 211 AVKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKA 248
>GUC2G_MOUSE (Q6TL19) Guanylate cyclase 2G precursor (EC 4.6.1.2) (Guanylyl| cyclase receptor G) (mGC-G) Length = 1100 Score = 29.3 bits (64), Expect = 7.7 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Frame = +1 Query: 70 RTASSSPARPRFGGICASRARHAQFGISLSDLHL-NKLQSSLLPHGLH---QVDHG-GQQ 234 RT S SP PR SRA H + LS + L L+++ L G H + H Q Sbjct: 4 RTRSESPLEPRLYAGAGSRADHPSLVLMLSVVMLVTCLEAAKLTVGFHAPWNISHPFSVQ 63 Query: 235 RIAAGL 252 R+ AGL Sbjct: 64 RLGAGL 69
>LEXA_BRAJA (Q89KS7) LexA repressor (EC 3.4.21.88)| Length = 231 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 379 LTEQQITLGNSRGFSPSAARKSTSDMSAEKSANNSDIP 492 L E Q GN RGF+PS + + A SA+ + P Sbjct: 69 LPELQAAAGNRRGFTPSVIEGNLGKVRASSSADEGERP 106
>MDHC2_ARATH (P57106) Malate dehydrogenase, cytoplasmic 2 (EC 1.1.1.37)| Length = 332 Score = 29.3 bits (64), Expect = 7.7 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%) Frame = +1 Query: 280 DISCMLTIGNHQNNKKSDVKKASPQLMLFGKPI---------LTEQQITLGNSRGFSPSA 432 D+ ++ GNH + + DV A+ + + KP+ L + I+ RG + Sbjct: 178 DVKNVIIWGNHSSTQYPDVNHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIK 237 Query: 433 ARKSTSDMSAEKSA 474 ARK +S +SA SA Sbjct: 238 ARKLSSALSAASSA 251
>MDHC1_ARATH (P93819) Malate dehydrogenase, cytoplasmic 1 (EC 1.1.1.37)| Length = 332 Score = 29.3 bits (64), Expect = 7.7 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 9/74 (12%) Frame = +1 Query: 280 DISCMLTIGNHQNNKKSDVKKASPQLMLFGKPI---------LTEQQITLGNSRGFSPSA 432 D+ ++ GNH +++ DV A Q KP+ L + I+ RG + Sbjct: 178 DVKNVIIWGNHSSSQYPDVNHAKVQTSSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIK 237 Query: 433 ARKSTSDMSAEKSA 474 ARK +S +SA SA Sbjct: 238 ARKLSSALSAASSA 251
>ARGI2_MOUSE (O08691) Arginase-2, mitochondrial precursor (EC 3.5.3.1) (Arginase| II) (Non-hepatic arginase) (Kidney-type arginase) Length = 354 Score = 29.3 bits (64), Expect = 7.7 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = +1 Query: 148 ISLSDLHLNKLQSSLLPHGLHQVDHGGQQRIAAGLIIGHQSAQDDISCMLTIGNH 312 + L++ L ++ S + G V GG +A G IIGH + D+ C++ + H Sbjct: 92 VGLANQELAEVVSRAVSGGYSCVTMGGDHSLAIGTIIGHARHRPDL-CVIWVDAH 145
>CAPON_DROME (Q8SXX4) Capon-like protein| Length = 698 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = +1 Query: 379 LTEQQITLGNSRGFSPSAARKSTSDMSAEKSANNSDIPSPQSNQNGTMKNLSCGG 543 LT + N F+ S++ +S E++ NN + + NG + L+CGG Sbjct: 535 LTPSPLGTMNRNSFAGSSSLNEDIRLSIEQNLNNLEEQLKAAVSNGNLAGLACGG 589
>K0562_HUMAN (O60308) Protein KIAA0562| Length = 925 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%) Frame = +3 Query: 279 RHLVHAD-HWQSPEQQEVRC---QEGFTPADALWKAH 377 RH+ H D + PE+ RC E F+P + WKAH Sbjct: 826 RHIKHKDCNPAKPEKLANRCPLCHENFSPGEEAWKAH 862
>MDHC_HUMAN (P40925) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 28.9 bits (63), Expect = 10.0 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 11/100 (11%) Frame = +1 Query: 205 LHQVDHGGQQRIAAGLIIGHQSAQDDISCMLTIGNHQNNKKSDVKKASPQLMLFGKPI-- 378 L ++DH R A + + +D+ ++ GNH + + DV A +L GK + Sbjct: 154 LTRLDHN---RAKAQIALKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQ--GKEVGV 208 Query: 379 ---------LTEQQITLGNSRGFSPSAARKSTSDMSAEKS 471 L + +T RG + ARK +S MSA K+ Sbjct: 209 YEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKA 248
>SCAR2_ARATH (Q5XPJ9) Protein SCAR2 (AtSCAR2) (Protein WAVE4) (Protein| DISTORTED3) (Protein IRREGULAR TRICHOME BRANCH1) Length = 1399 Score = 28.9 bits (63), Expect = 10.0 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Frame = +1 Query: 271 AQDDISCMLTIGNHQNNKKSDVKKASPQLMLFGKPILTEQQITLGNS-RGFSPSAARKST 447 +Q+D SC LT+ + S+V + SP+L+ + GN R P + KS Sbjct: 537 SQNDQSCSLTV----QSLASEVVETSPELVRL-------DLMKGGNDGRKVDPFDSSKSC 585 Query: 448 SDMSAEKSANNSDIPSPQSNQNGTMKNLSC 537 + A+ NSD+PS S+ + T + C Sbjct: 586 ASFDAK----NSDLPSETSSISSTSEGSRC 611
>PCP_PYRFU (O73944) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 208 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -2 Query: 164 RSDKDIPN*ACLALEAQIPPNRGRAGEDEAVRPSLP 57 RS I A A++A+IP N G+ EDE + P P Sbjct: 73 RSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGAP 108 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.128 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,045,151 Number of Sequences: 219361 Number of extensions: 1644375 Number of successful extensions: 3857 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3719 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3848 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)