ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart37a08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016476.1| Zea mays clone Contig309 mRNA sequence Length = 1258 Score = 280 bits (141), Expect = 5e-72 Identities = 237/269 (88%) Strand = Plus / Minus Query: 141 cgccgccgcgggtgaaagcgccgaccccgcgcccccctccgccggcctcgctccagcccg 200 ||||||||| |||||| |||||||||||||| ||||| |||||||||||||| ||||||| Sbjct: 1097 cgccgccgccggtgaaggcgccgaccccgcggcccccgccgccggcctcgctgcagcccg 1038 Query: 201 actccccgggcgtcttcttcaccaacgctgccgcagccgccccactgggctccgcccacc 260 | |||||||| ||||||||| || ||| ||||| ||||| || |||||| ||||||||| Sbjct: 1037 agtccccgggggtcttcttctccgccgccgccgccgccgcgcccctgggcaccgcccacc 978 Query: 261 gccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgggccg 320 |||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 977 gccgcatcgccatcgccgtcgacctctccgacgagtccgcctacgccgtgcgctgggccg 918 Query: 321 tcgccaactacctccggcccggggacgccgtcatcctcctgcacgtccgctccactaatg 380 |||||||||||||||| |||||||||||||||||||| || ||||| ||| |||| | Sbjct: 917 tcgccaactacctccgccccggggacgccgtcatcctgctccacgtgcgccccacctccg 858 Query: 381 ttctatacggcgctgactggggctccgtc 409 | || |||||||| ||||||||| ||||| Sbjct: 857 tgctctacggcgccgactggggcgccgtc 829 Score = 79.8 bits (40), Expect = 9e-12 Identities = 99/119 (83%) Strand = Plus / Minus Query: 443 gccgcgcgcaagatggaggaagacttcgacgccctcaccgcttccaaggccgacgacctg 502 |||||||||| ||||||||| |||| ||||||| |||| || |||||||||||||| | Sbjct: 756 gccgcgcgcaggatggaggacgactacgacgccttcacggccaccaaggccgacgacttc 697 Query: 503 gccaagccactcgaggaggccaagatcccctacnagatccacatcgtcaaggatcacga 561 |||| || ||| |||| ||| ||||||||| ||||||||||||||| ||| ||||| Sbjct: 696 gccagcccgctcaaggacgccggcatcccctacaagatccacatcgtcagggaccacga 638
>ref|XM_478654.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1330 Score = 220 bits (111), Expect = 4e-54 Identities = 240/283 (84%) Strand = Plus / Plus Query: 127 gccgctggtggctccgccgccgcgggtgaaagcgccgaccccgcgcccccctccgccggc 186 |||||||| ||| ||||||||| |||||| |||||||||||||||||||| ||||||| Sbjct: 91 gccgctggcggcggcgccgccgccggtgaaggcgccgaccccgcgcccccccacgccggc 150 Query: 187 ctcgctccagcccgactccccgggcgtcttcttcaccaacgctgccgcagccgccccact 246 ||||| ||||| || |||||||| || |||||||| ||| || || |||||||| | Sbjct: 151 gtcgctgcagccggagtccccgggggtgttcttcacggccgccgcggcggccgccccggt 210 Query: 247 gggctccgcccaccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgc 306 || ||| | ||||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct: 211 cgggtcctcgcaccgccgcatcgccatcgccgttgacctctccgacgagtccgcgtacgc 270 Query: 307 cgtaagctgggccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 366 ||| ||||||||||||||||||||||||| |||||||||||||| || || |||||||| Sbjct: 271 cgtccgctgggccgtcgccaactacctccgccccggggacgccgttatactgctgcacgt 330 Query: 367 ccgctccactaatgttctatacggcgctgactggggctccgtc 409 |||| |||| || || |||||||| ||||||||||||||| Sbjct: 331 ccgccccacctccgtgctctacggcgccgactggggctccgtc 373 Score = 174 bits (88), Expect = 2e-40 Identities = 126/139 (90%) Strand = Plus / Plus Query: 423 ccgaagacgacgctgaggtcgccgcgcgcaagatggaggaagacttcgacgccctcaccg 482 |||| ||||||||||||| ||| || |||||||||||||| |||||||||||| |||||| Sbjct: 426 ccgaggacgacgctgaggccgcggcccgcaagatggaggacgacttcgacgccttcaccg 485 Query: 483 cttccaaggccgacgacctggccaagccactcgaggaggccaagatcccctacnagatcc 542 | |||||||||||||||||||||||||| ||| |||| ||| |||||||||| |||||| Sbjct: 486 cgtccaaggccgacgacctggccaagccgctcaaggacgccgggatcccctacaagatcc 545 Query: 543 acatcgtcaaggatcacga 561 ||||||||||||||||||| Sbjct: 546 acatcgtcaaggatcacga 564
>ref|XM_478653.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1352 Score = 220 bits (111), Expect = 4e-54 Identities = 240/283 (84%) Strand = Plus / Plus Query: 127 gccgctggtggctccgccgccgcgggtgaaagcgccgaccccgcgcccccctccgccggc 186 |||||||| ||| ||||||||| |||||| |||||||||||||||||||| ||||||| Sbjct: 136 gccgctggcggcggcgccgccgccggtgaaggcgccgaccccgcgcccccccacgccggc 195 Query: 187 ctcgctccagcccgactccccgggcgtcttcttcaccaacgctgccgcagccgccccact 246 ||||| ||||| || |||||||| || |||||||| ||| || || |||||||| | Sbjct: 196 gtcgctgcagccggagtccccgggggtgttcttcacggccgccgcggcggccgccccggt 255 Query: 247 gggctccgcccaccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgc 306 || ||| | ||||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct: 256 cgggtcctcgcaccgccgcatcgccatcgccgttgacctctccgacgagtccgcgtacgc 315 Query: 307 cgtaagctgggccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 366 ||| ||||||||||||||||||||||||| |||||||||||||| || || |||||||| Sbjct: 316 cgtccgctgggccgtcgccaactacctccgccccggggacgccgttatactgctgcacgt 375 Query: 367 ccgctccactaatgttctatacggcgctgactggggctccgtc 409 |||| |||| || || |||||||| ||||||||||||||| Sbjct: 376 ccgccccacctccgtgctctacggcgccgactggggctccgtc 418 Score = 174 bits (88), Expect = 2e-40 Identities = 126/139 (90%) Strand = Plus / Plus Query: 423 ccgaagacgacgctgaggtcgccgcgcgcaagatggaggaagacttcgacgccctcaccg 482 |||| ||||||||||||| ||| || |||||||||||||| |||||||||||| |||||| Sbjct: 471 ccgaggacgacgctgaggccgcggcccgcaagatggaggacgacttcgacgccttcaccg 530 Query: 483 cttccaaggccgacgacctggccaagccactcgaggaggccaagatcccctacnagatcc 542 | |||||||||||||||||||||||||| ||| |||| ||| |||||||||| |||||| Sbjct: 531 cgtccaaggccgacgacctggccaagccgctcaaggacgccgggatcccctacaagatcc 590 Query: 543 acatcgtcaaggatcacga 561 ||||||||||||||||||| Sbjct: 591 acatcgtcaaggatcacga 609
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 220 bits (111), Expect = 4e-54 Identities = 240/283 (84%) Strand = Plus / Minus Query: 127 gccgctggtggctccgccgccgcgggtgaaagcgccgaccccgcgcccccctccgccggc 186 |||||||| ||| ||||||||| |||||| |||||||||||||||||||| ||||||| Sbjct: 21844897 gccgctggcggcggcgccgccgccggtgaaggcgccgaccccgcgcccccccacgccggc 21844838 Query: 187 ctcgctccagcccgactccccgggcgtcttcttcaccaacgctgccgcagccgccccact 246 ||||| ||||| || |||||||| || |||||||| ||| || || |||||||| | Sbjct: 21844837 gtcgctgcagccggagtccccgggggtgttcttcacggccgccgcggcggccgccccggt 21844778 Query: 247 gggctccgcccaccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgc 306 || ||| | ||||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct: 21844777 cgggtcctcgcaccgccgcatcgccatcgccgttgacctctccgacgagtccgcgtacgc 21844718 Query: 307 cgtaagctgggccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 366 ||| ||||||||||||||||||||||||| |||||||||||||| || || |||||||| Sbjct: 21844717 cgtccgctgggccgtcgccaactacctccgccccggggacgccgttatactgctgcacgt 21844658 Query: 367 ccgctccactaatgttctatacggcgctgactggggctccgtc 409 |||| |||| || || |||||||| ||||||||||||||| Sbjct: 21844657 ccgccccacctccgtgctctacggcgccgactggggctccgtc 21844615 Score = 174 bits (88), Expect = 2e-40 Identities = 126/139 (90%) Strand = Plus / Minus Query: 423 ccgaagacgacgctgaggtcgccgcgcgcaagatggaggaagacttcgacgccctcaccg 482 |||| ||||||||||||| ||| || |||||||||||||| |||||||||||| |||||| Sbjct: 21844562 ccgaggacgacgctgaggccgcggcccgcaagatggaggacgacttcgacgccttcaccg 21844503 Query: 483 cttccaaggccgacgacctggccaagccactcgaggaggccaagatcccctacnagatcc 542 | |||||||||||||||||||||||||| ||| |||| ||| |||||||||| |||||| Sbjct: 21844502 cgtccaaggccgacgacctggccaagccgctcaaggacgccgggatcccctacaagatcc 21844443 Query: 543 acatcgtcaaggatcacga 561 ||||||||||||||||||| Sbjct: 21844442 acatcgtcaaggatcacga 21844424 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 128 ccgctggtggctccgccgccgcgg 151 ||||||||| |||||||||||||| Sbjct: 14439567 ccgctggtgcctccgccgccgcgg 14439544
>dbj|AK109507.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E04, full insert sequence Length = 1351 Score = 220 bits (111), Expect = 4e-54 Identities = 240/283 (84%) Strand = Plus / Plus Query: 127 gccgctggtggctccgccgccgcgggtgaaagcgccgaccccgcgcccccctccgccggc 186 |||||||| ||| ||||||||| |||||| |||||||||||||||||||| ||||||| Sbjct: 136 gccgctggcggcggcgccgccgccggtgaaggcgccgaccccgcgcccccccacgccggc 195 Query: 187 ctcgctccagcccgactccccgggcgtcttcttcaccaacgctgccgcagccgccccact 246 ||||| ||||| || |||||||| || |||||||| ||| || || |||||||| | Sbjct: 196 gtcgctgcagccggagtccccgggggtgttcttcacggccgccgcggcggccgccccggt 255 Query: 247 gggctccgcccaccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgc 306 || ||| | ||||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct: 256 cgggtcctcgcaccgccgcatcgccatcgccgttgacctctccgacgagtccgcgtacgc 315 Query: 307 cgtaagctgggccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 366 ||| ||||||||||||||||||||||||| |||||||||||||| || || |||||||| Sbjct: 316 cgtccgctgggccgtcgccaactacctccgccccggggacgccgttatactgctgcacgt 375 Query: 367 ccgctccactaatgttctatacggcgctgactggggctccgtc 409 |||| |||| || || |||||||| ||||||||||||||| Sbjct: 376 ccgccccacctccgtgctctacggcgccgactggggctccgtc 418 Score = 174 bits (88), Expect = 2e-40 Identities = 126/139 (90%) Strand = Plus / Plus Query: 423 ccgaagacgacgctgaggtcgccgcgcgcaagatggaggaagacttcgacgccctcaccg 482 |||| ||||||||||||| ||| || |||||||||||||| |||||||||||| |||||| Sbjct: 471 ccgaggacgacgctgaggccgcggcccgcaagatggaggacgacttcgacgccttcaccg 530 Query: 483 cttccaaggccgacgacctggccaagccactcgaggaggccaagatcccctacnagatcc 542 | |||||||||||||||||||||||||| ||| |||| ||| |||||||||| |||||| Sbjct: 531 cgtccaaggccgacgacctggccaagccgctcaaggacgccgggatcccctacaagatcc 590 Query: 543 acatcgtcaaggatcacga 561 ||||||||||||||||||| Sbjct: 591 acatcgtcaaggatcacga 609
>dbj|AK060720.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F04, full insert sequence Length = 1330 Score = 220 bits (111), Expect = 4e-54 Identities = 240/283 (84%) Strand = Plus / Plus Query: 127 gccgctggtggctccgccgccgcgggtgaaagcgccgaccccgcgcccccctccgccggc 186 |||||||| ||| ||||||||| |||||| |||||||||||||||||||| ||||||| Sbjct: 91 gccgctggcggcggcgccgccgccggtgaaggcgccgaccccgcgcccccccacgccggc 150 Query: 187 ctcgctccagcccgactccccgggcgtcttcttcaccaacgctgccgcagccgccccact 246 ||||| ||||| || |||||||| || |||||||| ||| || || |||||||| | Sbjct: 151 gtcgctgcagccggagtccccgggggtgttcttcacggccgccgcggcggccgccccggt 210 Query: 247 gggctccgcccaccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgc 306 || ||| | ||||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct: 211 cgggtcctcgcaccgccgcatcgccatcgccgttgacctctccgacgagtccgcgtacgc 270 Query: 307 cgtaagctgggccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 366 ||| ||||||||||||||||||||||||| |||||||||||||| || || |||||||| Sbjct: 271 cgtccgctgggccgtcgccaactacctccgccccggggacgccgttatactgctgcacgt 330 Query: 367 ccgctccactaatgttctatacggcgctgactggggctccgtc 409 |||| |||| || || |||||||| ||||||||||||||| Sbjct: 331 ccgccccacctccgtgctctacggcgccgactggggctccgtc 373 Score = 174 bits (88), Expect = 2e-40 Identities = 126/139 (90%) Strand = Plus / Plus Query: 423 ccgaagacgacgctgaggtcgccgcgcgcaagatggaggaagacttcgacgccctcaccg 482 |||| ||||||||||||| ||| || |||||||||||||| |||||||||||| |||||| Sbjct: 426 ccgaggacgacgctgaggccgcggcccgcaagatggaggacgacttcgacgccttcaccg 485 Query: 483 cttccaaggccgacgacctggccaagccactcgaggaggccaagatcccctacnagatcc 542 | |||||||||||||||||||||||||| ||| |||| ||| |||||||||| |||||| Sbjct: 486 cgtccaaggccgacgacctggccaagccgctcaaggacgccgggatcccctacaagatcc 545 Query: 543 acatcgtcaaggatcacga 561 ||||||||||||||||||| Sbjct: 546 acatcgtcaaggatcacga 564
>dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0041B22 Length = 142446 Score = 220 bits (111), Expect = 4e-54 Identities = 240/283 (84%) Strand = Plus / Minus Query: 127 gccgctggtggctccgccgccgcgggtgaaagcgccgaccccgcgcccccctccgccggc 186 |||||||| ||| ||||||||| |||||| |||||||||||||||||||| ||||||| Sbjct: 58573 gccgctggcggcggcgccgccgccggtgaaggcgccgaccccgcgcccccccacgccggc 58514 Query: 187 ctcgctccagcccgactccccgggcgtcttcttcaccaacgctgccgcagccgccccact 246 ||||| ||||| || |||||||| || |||||||| ||| || || |||||||| | Sbjct: 58513 gtcgctgcagccggagtccccgggggtgttcttcacggccgccgcggcggccgccccggt 58454 Query: 247 gggctccgcccaccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgc 306 || ||| | ||||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct: 58453 cgggtcctcgcaccgccgcatcgccatcgccgttgacctctccgacgagtccgcgtacgc 58394 Query: 307 cgtaagctgggccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 366 ||| ||||||||||||||||||||||||| |||||||||||||| || || |||||||| Sbjct: 58393 cgtccgctgggccgtcgccaactacctccgccccggggacgccgttatactgctgcacgt 58334 Query: 367 ccgctccactaatgttctatacggcgctgactggggctccgtc 409 |||| |||| || || |||||||| ||||||||||||||| Sbjct: 58333 ccgccccacctccgtgctctacggcgccgactggggctccgtc 58291 Score = 174 bits (88), Expect = 2e-40 Identities = 126/139 (90%) Strand = Plus / Minus Query: 423 ccgaagacgacgctgaggtcgccgcgcgcaagatggaggaagacttcgacgccctcaccg 482 |||| ||||||||||||| ||| || |||||||||||||| |||||||||||| |||||| Sbjct: 58238 ccgaggacgacgctgaggccgcggcccgcaagatggaggacgacttcgacgccttcaccg 58179 Query: 483 cttccaaggccgacgacctggccaagccactcgaggaggccaagatcccctacnagatcc 542 | |||||||||||||||||||||||||| ||| |||| ||| |||||||||| |||||| Sbjct: 58178 cgtccaaggccgacgacctggccaagccgctcaaggacgccgggatcccctacaagatcc 58119 Query: 543 acatcgtcaaggatcacga 561 ||||||||||||||||||| Sbjct: 58118 acatcgtcaaggatcacga 58100
>ref|XM_470701.1| Oryza sativa (japonica cultivar-group), mRNA Length = 270 Score = 129 bits (65), Expect = 1e-26 Identities = 106/120 (88%) Strand = Plus / Plus Query: 428 gacgacgctgaggtcgccgcgcgcaagatggaggaagacttcgacgccctcaccgcttcc 487 |||||||| |||| ||| || |||||||||||||| |||||| ||||| |||||| ||| Sbjct: 88 gacgacgccgaggccgcggcccgcaagatggaggacgacttcaacgccttcaccgtgtcc 147 Query: 488 aaggccgacgacctggccaagccactcgaggaggccaagatcccctacnagatccacatc 547 ||||||||||||||||||||||||||| |||| ||| |||||||||| ||||||||||| Sbjct: 148 aaggccgacgacctggccaagccactcaaggacgccgggatcccctacaagatccacatc 207
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 129 bits (65), Expect = 1e-26 Identities = 106/120 (88%) Strand = Plus / Plus Query: 428 gacgacgctgaggtcgccgcgcgcaagatggaggaagacttcgacgccctcaccgcttcc 487 |||||||| |||| ||| || |||||||||||||| |||||| ||||| |||||| ||| Sbjct: 14621346 gacgacgccgaggccgcggcccgcaagatggaggacgacttcaacgccttcaccgtgtcc 14621405 Query: 488 aaggccgacgacctggccaagccactcgaggaggccaagatcccctacnagatccacatc 547 ||||||||||||||||||||||||||| |||| ||| |||||||||| ||||||||||| Sbjct: 14621406 aaggccgacgacctggccaagccactcaaggacgccgggatcccctacaagatccacatc 14621465
>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete sequence Length = 147130 Score = 129 bits (65), Expect = 1e-26 Identities = 106/120 (88%) Strand = Plus / Minus Query: 428 gacgacgctgaggtcgccgcgcgcaagatggaggaagacttcgacgccctcaccgcttcc 487 |||||||| |||| ||| || |||||||||||||| |||||| ||||| |||||| ||| Sbjct: 36365 gacgacgccgaggccgcggcccgcaagatggaggacgacttcaacgccttcaccgtgtcc 36306 Query: 488 aaggccgacgacctggccaagccactcgaggaggccaagatcccctacnagatccacatc 547 ||||||||||||||||||||||||||| |||| ||| |||||||||| ||||||||||| Sbjct: 36305 aaggccgacgacctggccaagccactcaaggacgccgggatcccctacaagatccacatc 36246
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 129 bits (65), Expect = 1e-26 Identities = 106/120 (88%) Strand = Plus / Plus Query: 428 gacgacgctgaggtcgccgcgcgcaagatggaggaagacttcgacgccctcaccgcttcc 487 |||||||| |||| ||| || |||||||||||||| |||||| ||||| |||||| ||| Sbjct: 14616321 gacgacgccgaggccgcggcccgcaagatggaggacgacttcaacgccttcaccgtgtcc 14616380 Query: 488 aaggccgacgacctggccaagccactcgaggaggccaagatcccctacnagatccacatc 547 ||||||||||||||||||||||||||| |||| ||| |||||||||| ||||||||||| Sbjct: 14616381 aaggccgacgacctggccaagccactcaaggacgccgggatcccctacaagatccacatc 14616440
>ref|NM_191514.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 819 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Plus Query: 257 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 316 ||||| |||||||||||||||||||| || |||||||||||||| |||||||| | ||| Sbjct: 175 caccggcgcatcgccatcgccgtcgacctctccgacgagtccgcgtacgccgtccggtgg 234 Query: 317 gccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 366 ||||| ||||||||||| ||||||||||||||| | ||||| ||||| Sbjct: 235 gccgtgcagaactacctccgccccggggacgccgtcgtgctcctccacgt 284
>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017K09, complete sequence Length = 155525 Score = 99.6 bits (50), Expect = 1e-17 Identities = 125/150 (83%) Strand = Plus / Plus Query: 257 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 316 |||||||||||||||||||||||||| || |||||||||||||||| |||||| | ||| Sbjct: 65475 caccgccgcatcgccatcgccgtcgacctctccgacgagtccgccttcgccgtcaagtgg 65534 Query: 317 gccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgtccgctccact 376 |||| ||||||||||| || || ||||||||| | ||||| ||||||||| |||| Sbjct: 65535 tccgtgcagaactacctccgcccgggcgacgccgtcgtgctcctccacgtccgccccacc 65594 Query: 377 aatgttctatacggcgctgactggggctcc 406 || || |||||||| |||||||||||| Sbjct: 65595 tccgtgctctacggcgccgactggggctcc 65624
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 99.6 bits (50), Expect = 1e-17 Identities = 125/150 (83%) Strand = Plus / Plus Query: 257 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 316 |||||||||||||||||||||||||| || |||||||||||||||| |||||| | ||| Sbjct: 24551293 caccgccgcatcgccatcgccgtcgacctctccgacgagtccgccttcgccgtcaagtgg 24551352 Query: 317 gccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgtccgctccact 376 |||| ||||||||||| || || ||||||||| | ||||| ||||||||| |||| Sbjct: 24551353 tccgtgcagaactacctccgcccgggcgacgccgtcgtgctcctccacgtccgccccacc 24551412 Query: 377 aatgttctatacggcgctgactggggctcc 406 || || |||||||| |||||||||||| Sbjct: 24551413 tccgtgctctacggcgccgactggggctcc 24551442
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Minus Query: 257 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 316 ||||| |||||||||||||||||||| || |||||||||||||| |||||||| | ||| Sbjct: 33194569 caccggcgcatcgccatcgccgtcgacctctccgacgagtccgcgtacgccgtccggtgg 33194510 Query: 317 gccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 366 ||||| ||||||||||| ||||||||||||||| | ||||| ||||| Sbjct: 33194509 gccgtgcagaactacctccgccccggggacgccgtcgtgctcctccacgt 33194460
>dbj|AP003368.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1100D10 Length = 152997 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Minus Query: 257 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 316 ||||| |||||||||||||||||||| || |||||||||||||| |||||||| | ||| Sbjct: 131479 caccggcgcatcgccatcgccgtcgacctctccgacgagtccgcgtacgccgtccggtgg 131420 Query: 317 gccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 366 ||||| ||||||||||| ||||||||||||||| | ||||| ||||| Sbjct: 131419 gccgtgcagaactacctccgccccggggacgccgtcgtgctcctccacgt 131370
>dbj|AK072280.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018C18, full insert sequence Length = 1337 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Plus Query: 257 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 316 ||||| |||||||||||||||||||| || |||||||||||||| |||||||| | ||| Sbjct: 425 caccggcgcatcgccatcgccgtcgacctctccgacgagtccgcgtacgccgtccggtgg 484 Query: 317 gccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 366 ||||| ||||||||||| ||||||||||||||| | ||||| ||||| Sbjct: 485 gccgtgcagaactacctccgccccggggacgccgtcgtgctcctccacgt 534
>dbj|AK060312.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-C02, full insert sequence Length = 1118 Score = 99.6 bits (50), Expect = 1e-17 Identities = 125/150 (83%) Strand = Plus / Plus Query: 257 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 316 |||||||||||||||||||||||||| || |||||||||||||||| |||||| | ||| Sbjct: 259 caccgccgcatcgccatcgccgtcgacctctccgacgagtccgccttcgccgtcaagtgg 318 Query: 317 gccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgtccgctccact 376 |||| ||||||||||| || || ||||||||| | ||||| ||||||||| |||| Sbjct: 319 tccgtgcagaactacctccgcccgggcgacgccgtcgtgctcctccacgtccgccccacc 378 Query: 377 aatgttctatacggcgctgactggggctcc 406 || || |||||||| |||||||||||| Sbjct: 379 tccgtgctctacggcgccgactggggctcc 408
>gb|BT017743.1| Zea mays clone EL01N0449E08.c mRNA sequence Length = 1322 Score = 79.8 bits (40), Expect = 9e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 257 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 316 ||||| ||||||||||||||||| ||||| |||||||||||||||| ||| || | ||| Sbjct: 299 caccgtcgcatcgccatcgccgttgatctctccgacgagtccgccttcgcagtcaagtgg 358 Query: 317 gccgtcgccaactacctccggcccggggacgccgtc 352 ||||| |||||| |||| ||||||||||||||| Sbjct: 359 gccgtgcagaactacgtccgccccggggacgccgtc 394
>gb|AY104756.1| Zea mays PCO067622 mRNA sequence Length = 637 Score = 65.9 bits (33), Expect = 1e-07 Identities = 89/108 (82%) Strand = Plus / Plus Query: 454 gatggaggaagacttcgacgccctcaccgcttccaaggccgacgacctggccaagccact 513 ||||||||| |||| ||||||| |||| || |||||||||||||| | |||| || || Sbjct: 12 gatggaggacgactacgacgccttcacggccaccaaggccgacgacttcgccagcccgct 71 Query: 514 cgaggaggccaagatcccctacnagatccacatcgtcaaggatcacga 561 | |||| ||| ||||||||| ||||||||||||||| ||| ||||| Sbjct: 72 caaggacgccggcatcccctacaagatccacatcgtcagggaccacga 119
>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence Length = 213888 Score = 63.9 bits (32), Expect = 5e-07 Identities = 80/96 (83%) Strand = Plus / Minus Query: 257 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 316 ||||| |||||||||||||||| ||||| |||||||||||||| ||| || | ||| Sbjct: 4866 caccgtcgcatcgccatcgccgctgatctcaacgacgagtccgccttcgcagtcaagtgg 4807 Query: 317 gccgtcgccaactacctccggcccggggacgccgtc 352 ||||| ||||||||||| ||||||||||||||| Sbjct: 4806 gccgtgcagaactacctccgccccggggacgccgtc 4771
>gb|AY780887.1| Pseudomonas fluorescens strain B16 transcriptional regulator (pgpR), ornithine/acetylornithine aminotransferase (pgpA), putative cytoplasmic protein (pgpB), DNA-binding protein (pgpC), dipeptidyl aminopeptidase/acylaminoacyl-peptidase (pqqG), putative Fe-S oxidoreductase (pqqE), pyrroloquinoline quinone biosynthesis protein D (pqqD), pyrroloquinoline quinone biosynthesis protein C (pqqC), beta-lactamase superfamily I metal-dependent hydrolase (pqqB), pyrroloquinoline quinone biosynthesis protein A (pqqA), and secreted/periplasmic Zn-dependent peptidase (pqqF) genes, complete cds Length = 13361 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 279 tcgatctgtccgacgagtccgcctacgccgta 310 |||||||||||||||| |||||| |||||||| Sbjct: 2323 tcgatctgtccgacgattccgccgacgccgta 2354
>ref|XM_504313.1| Yarrowia lipolytica CLIB122, YALI0E23518g predicted mRNA Length = 906 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Plus Query: 485 tccaaggccgacgacctggccaag 508 |||||||||||||||||||||||| Sbjct: 226 tccaaggccgacgacctggccaag 249
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 485 tccaaggccgacgacctggccaag 508 |||||||||||||||||||||||| Sbjct: 2767462 tccaaggccgacgacctggccaag 2767439
>gb|AC167926.2| Mycosphaerella graminicola clone JGIBBWB-9A8, complete sequence Length = 40143 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 252 ccgcccaccgccgcatcgccatc 274 ||||||||||||||||||||||| Sbjct: 17250 ccgcccaccgccgcatcgccatc 17272
>gb|AE005732.1| Caulobacter crescentus CB15 section 58 of 359 of the complete genome Length = 14719 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 428 gacgacgctgaggtcgccgcgcgcaa 453 ||||||||||||| |||||||||||| Sbjct: 12330 gacgacgctgaggacgccgcgcgcaa 12305
>gb|AY104923.1| Zea mays PCO144363 mRNA sequence Length = 982 Score = 44.1 bits (22), Expect = 0.49 Identities = 33/37 (89%) Strand = Plus / Plus Query: 525 agatcccctacnagatccacatcgtcaaggatcacga 561 ||||||||| | |||||||||||||||| || ||||| Sbjct: 180 agatccccttcaagatccacatcgtcaaagaccacga 216
>gb|U87832.1|OBU87832 Oat blue dwarf virus complete genome Length = 6509 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 3 cagcttctccccccttccccac 24 |||||||||||||||||||||| Sbjct: 1764 cagcttctccccccttccccac 1785
>ref|NM_179307.1| Arabidopsis thaliana unknown protein AT1G11360 transcript variant AT1G11360.2 mRNA, complete cds Length = 1159 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 537 agatccacatcgtcaaggatcacga 561 ||||||| ||||||||||||||||| Sbjct: 546 agatccatatcgtcaaggatcacga 570
>ref|NM_101009.2| Arabidopsis thaliana unknown protein AT1G11360 transcript variant AT1G11360.1 mRNA, complete cds Length = 1226 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 537 agatccacatcgtcaaggatcacga 561 ||||||| ||||||||||||||||| Sbjct: 546 agatccatatcgtcaaggatcacga 570
>emb|AL353704.10| Human DNA sequence from clone RP11-551M15 on chromosome 13 Contains three novel genes, the 5' end of the ARHGEF7 gene for Rho guanine nucleotide exchange factor (GEF) 7 (KIAA0142) and three CpG islands, complete sequence Length = 117417 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 ttctccccccttccccactgc 27 ||||||||||||||||||||| Sbjct: 13270 ttctccccccttccccactgc 13250
>gb|AE005722.1| Caulobacter crescentus CB15 section 48 of 359 of the complete genome Length = 12112 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 125 ccgccgctggtggctccgccgccgc 149 |||||||||||||| |||||||||| Sbjct: 3391 ccgccgctggtggcgccgccgccgc 3415
>gb|AY091783.1| Arabidopsis thaliana At1g11350/T23J18_2 mRNA sequence Length = 4925 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 537 agatccacatcgtcaaggatcacga 561 ||||||| ||||||||||||||||| Sbjct: 440 agatccatatcgtcaaggatcacga 464
>gb|AY050416.1| Arabidopsis thaliana At1g11360/T23J18_35 mRNA, complete cds Length = 1018 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 537 agatccacatcgtcaaggatcacga 561 ||||||| ||||||||||||||||| Sbjct: 422 agatccatatcgtcaaggatcacga 446
>emb|BX817082.1|CNS0ADAN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH84ZG01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1340 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 537 agatccacatcgtcaaggatcacga 561 ||||||| ||||||||||||||||| Sbjct: 424 agatccatatcgtcaaggatcacga 448
>emb|BX817449.1|CNS0ACMU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL23ZE08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1060 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 537 agatccacatcgtcaaggatcacga 561 ||||||| ||||||||||||||||| Sbjct: 423 agatccatatcgtcaaggatcacga 447
>emb|BX816453.1|CNS0AD1V Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH49ZH07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1401 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 537 agatccacatcgtcaaggatcacga 561 ||||||| ||||||||||||||||| Sbjct: 421 agatccatatcgtcaaggatcacga 445
>emb|BX816396.1|CNS0AD68 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH45ZE09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1033 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 537 agatccacatcgtcaaggatcacga 561 ||||||| ||||||||||||||||| Sbjct: 423 agatccatatcgtcaaggatcacga 447
>gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I, complete sequence Length = 84797 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 537 agatccacatcgtcaaggatcacga 561 ||||||| ||||||||||||||||| Sbjct: 7092 agatccatatcgtcaaggatcacga 7068
>gb|AC152002.2| Ornithorhynchus anatinus chromosome UNK clone OABb-387A1, complete sequence Length = 131214 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 6 cttctccccccttccccactgctcc 30 ||||||||||||||||| ||||||| Sbjct: 6779 cttctccccccttcccctctgctcc 6803
>ref|NM_001031407.1| Gallus gallus proteasome (prosome, macropain) subunit, alpha type, 5 (PSMA5), mRNA Length = 1047 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 161 ccgaccccgcgcccccctccgccg 184 ||||||||||||||||| |||||| Sbjct: 61 ccgaccccgcgccccccgccgccg 84
>ref|XM_477788.1| Oryza sativa (japonica cultivar-group), mRNA Length = 609 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 128 ccgctggtggctccgccgccgcgg 151 ||||||||| |||||||||||||| Sbjct: 203 ccgctggtgcctccgccgccgcgg 180
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 cttcttcaccaacgctgccg 233 |||||||||||||||||||| Sbjct: 2703413 cttcttcaccaacgctgccg 2703432
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tcgccgcgcgcaagatggag 460 |||||||||||||||||||| Sbjct: 5448972 tcgccgcgcgcaagatggag 5448953
>emb|AL731555.10| Human DNA sequence from clone RP11-157J13 on chromosome 10 Contains a pseudogene similar to part of guanine nucleotide binding protein (G protein) alpha inhibiting activity (GNAI2) and a CpG island, complete sequence Length = 178389 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 cccccttccccactgctccc 31 |||||||||||||||||||| Sbjct: 115591 cccccttccccactgctccc 115610
>emb|AL096843.11|HSA262A13 Human DNA sequence from clone RP11-262A13 on chromosome 22, complete sequence Length = 128155 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cgccccactgggctccgccc 257 |||||||||||||||||||| Sbjct: 40051 cgccccactgggctccgccc 40070
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 485 tccaaggccgacgacctggccaag 508 ||||||||||||| |||||||||| Sbjct: 117907 tccaaggccgacgccctggccaag 117884
>emb|AJ720305.1| Gallus gallus mRNA for hypothetical protein, clone 14i9 Length = 1047 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 161 ccgaccccgcgcccccctccgccg 184 ||||||||||||||||| |||||| Sbjct: 61 ccgaccccgcgccccccgccgccg 84
>ref|XM_695621.1| PREDICTED: Danio rerio similar to glutamate receptor 6 (LOC571973), partial mRNA Length = 1088 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 ggccgacgacctggccaagc 509 |||||||||||||||||||| Sbjct: 595 ggccgacgacctggccaagc 614
>emb|CR386956.1| Gallus gallus finished cDNA, clone ChEST102f7 Length = 769 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 161 ccgaccccgcgcccccctccgccg 184 ||||||||||||||||| |||||| Sbjct: 72 ccgaccccgcgccccccgccgccg 95
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 cgccgctggtggctccgccgccgc 149 |||||| ||||||||||||||||| Sbjct: 21330370 cgccgccggtggctccgccgccgc 21330393
>dbj|AP005862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0038K02 Length = 118635 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 cgccgctggtggctccgccgccgc 149 |||||| ||||||||||||||||| Sbjct: 62749 cgccgccggtggctccgccgccgc 62772
>dbj|AP005200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0673E01 Length = 125909 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 128 ccgctggtggctccgccgccgcgg 151 ||||||||| |||||||||||||| Sbjct: 59898 ccgctggtgcctccgccgccgcgg 59875
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 424 cgaagacgacgctgaggtcgccgc 447 |||||||||||| ||||||||||| Sbjct: 5594855 cgaagacgacgcggaggtcgccgc 5594878
>dbj|AK100643.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110J21, full insert sequence Length = 4052 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 cgccgctggtggctccgccgccgc 149 |||||| ||||||||||||||||| Sbjct: 895 cgccgccggtggctccgccgccgc 918
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 gccatcgccgtcgatctgtccgac 292 ||||||||||||| |||||||||| Sbjct: 1350423 gccatcgccgtcgctctgtccgac 1350400 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,441,481 Number of Sequences: 3902068 Number of extensions: 3441481 Number of successful extensions: 74478 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73754 Number of HSP's gapped (non-prelim): 701 length of query: 561 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 538 effective length of database: 17,143,297,704 effective search space: 9223094164752 effective search space used: 9223094164752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
