>Y4095_ARATH (Q9M160) Protein At4g00950|
          Length = 291

 Score = 32.3 bits (72), Expect = 0.89
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +3

Query: 402 HPRSS--YSTTASAVPFDWEERPGTPK 476
           H  SS  +S+ +++VPF WEE PG PK
Sbjct: 30  HSMSSPIHSSISASVPFSWEEEPGKPK 56

>CCD96_HUMAN (Q2M329) Coiled-coil domain-containing protein 96|
          Length = 555

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 86  EPVRHGAVQPARPPPGAGHPVRLRRGSGGEGQQPVPDG 199
           EP   GA +PA+P PGAG P  L   +G E  +   +G
Sbjct: 99  EPAEVGAEEPAQPEPGAG-PEELEAEAGAEELEQAAEG 135

>SPD1_NEPCL (P19837) Spidroin 1 (Dragline silk fibroin 1) (Fragment)|
          Length = 747

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = -2

Query: 217 GFGDDGAVRNGLLPLAAAPSTEPNGVAGSGRRPCGLDGAVAYGLAAALSGRCGVGEAG 44
           G G+ GA R G    AAA      G  G G +  G  G    G  AA +   G G+ G
Sbjct: 453 GLGNQGAGRGGQGAAAAAGGAGQGGYGGLGSQGAGRGG---QGAGAAAAAAVGAGQEG 507



 Score = 30.4 bits (67), Expect = 3.4
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = -2

Query: 217 GFGDDGAVRNGL-LPLAAAPSTEPNGVAGSGRRPCGLDGAVAYGLAAALSGRCGVGEAG 44
           G G+ GA R G     AAA      G  G G +  G  G    G  AA +   G G+ G
Sbjct: 125 GLGNQGAGRGGQGAAAAAAGGAGQGGYGGLGSQGAGRGGLGGQGAGAAAAAAGGAGQGG 183



 Score = 29.3 bits (64), Expect = 7.6
 Identities = 21/58 (36%), Positives = 24/58 (41%)
 Frame = -2

Query: 217 GFGDDGAVRNGLLPLAAAPSTEPNGVAGSGRRPCGLDGAVAYGLAAALSGRCGVGEAG 44
           G G  GA +      AAA      G  G G +  G  G  A G AAA +G  G G  G
Sbjct: 550 GLGGQGAGQGAGAAAAAAGGVRQGGYGGLGSQGAGRGGQGA-GAAAAAAGGAGQGGYG 606

>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 117 HGRLPEPATPFGSVEGAAARGSSPFLTAPSSPNPFDLLPPATPRLAGANP 266
           H +   P  P  S +   A+G  P     S+P      PPATP  +GA P
Sbjct: 94  HQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPP 143

>TONB_KLEPN (P45610) Protein tonB|
          Length = 243

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
 Frame = +3

Query: 129 PEPATPFGSVEGAAAR--------GSSPFLTAPSSPNPFDLLPPATPRLAGA 260
           P PA+PF +   A AR         + P +TAPS P     + P+ P  A A
Sbjct: 123 PRPASPFENNNTAPARTAPSTSTAAAKPTVTAPSGPRAISRVQPSYPARAQA 174

>PRB4M_HUMAN (P10161) Basic salivary proline-rich protein 4 allele M (Salivary|
           proline-rich protein Po) (Parotid o protein) [Contains:
           Peptide P-D] (Fragment)
          Length = 238

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +2

Query: 77  RGREPVRHGAVQPARPPPGAGHPVRLRRGSGGEGQQPVP 193
           +GR P   G  QP RPPP  G P       G + Q P P
Sbjct: 7   QGRRP--QGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPP 43

>THYD_CLAFS (Q9UVI4) Trihydrophobin precursor (CFTH1)|
          Length = 394

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 89  PVRHGAVQPARPPPGAGHPVRLRRG-SGGEGQQPVPDG 199
           P   G     RPPPG G+      G +GG G QP P G
Sbjct: 18  PTSSGGSCRPRPPPGGGNGGNGGNGGNGGNGYQPCPAG 55

>RTN4R_MOUSE (Q99PI8) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = +3

Query: 120 GRLPEPATPFGSVEGAAARGSSPFLTAPSSPNPFDLLPPATPRLAGANP 266
           GR+P   TP G+  G      SPF T PSS  P    P    R  G+ P
Sbjct: 361 GRVPPGDTPPGNGSGPRHINDSPFGTLPSSAEP----PLTALRPGGSEP 405

>PRB4L_HUMAN (P10162) Basic salivary proline-rich protein 4 allele L (Salivary|
           proline-rich protein Po) (Parotid o protein) [Contains:
           Peptide P-D] (Fragment)
          Length = 276

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +2

Query: 77  RGREPVRHGAVQPARPPPGAGHPVRLRRGSGGEGQQPVP 193
           +GR P   G  QP RPPP  G P       G + Q P P
Sbjct: 3   QGRRP--QGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPP 39

>PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S precursor|
           (Salivary proline-rich protein Po) (Parotid o protein)
           [Contains: Protein N1; Glycosylated protein A]
          Length = 247

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = +2

Query: 80  GREPVRHGAVQPARPPPGAGHPVRLRRGSGGEGQQPVP 193
           GR P   G  QP RPPP  G P       G + Q P P
Sbjct: 38  GRRP--QGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPP 73

>PRPP_HUMAN (P81489) Salivary proline-rich protein II-1 (Fragment)|
          Length = 174

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 80  GREPVRHGAVQPARPPPGAGHPVRLRRGSGGEGQQPVPDG 199
           GR P + G  +P RPPP  G          G+ ++P P G
Sbjct: 106 GRPPQQGGPGKPERPPPQGGDQSHRPPPPPGKPERPPPQG 145

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 129 PEPATPFGSVEGAAARGSSPFLTAPSSPNPFDLLPPATPRLAGANP 266
           P PA P  +    A    +P   AP SP P    PP+ P  A  +P
Sbjct: 41  PSPAPPSPAPPSPAPPSPAPPSPAPPSPGPPSPAPPSPPSPAPPSP 86

>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)|
          Length = 2414

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +3

Query: 129  PEPATPFGSVEGAAARGSSPFLTAPSSPNPFDLLPPATPRLAGANP 266
            P PATP            +P  T+   P P + +PP  PR   A P
Sbjct: 1850 PTPATPTTPTGQQPTTPQTPQPTSQPQPTPPNSMPPYLPRTQAAGP 1895

>YB0F_SCHPO (P87156) Hypothetical protein C25H2.15 in chromosome II|
          Length = 396

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 144 PFGSVEGAAARGSSPFLTAPSSPNPFDLLPPATPRLAGANPF 269
           PF ++   ++RG +PF  A S+ NPF L     P    +N F
Sbjct: 135 PF-AITSESSRGLNPFSDATSANNPFSLSTDVNPSKPSSNVF 175

>MBIP1_MOUSE (Q99LQ1) MAP3K12-binding inhibitory protein 1 (MAPK upstream|
           kinase-binding inhibitory protein) (MUK-binding
           inhibitory protein)
          Length = 341

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 163 PSTEPNGVAGSGRRPCGL 110
           P T P G+AGSG +P G+
Sbjct: 220 PQTRPEGIAGSGHKPTGM 237

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
 Frame = +3

Query: 21   QEMEVMMRPASPTPHRXXXXXXXXXXXXXXXXHGRLPEPATPFGSVEGAAARGSSPFLTA 200
            Q+   +  P  P+PH                 H   P+P+       G  +  + P L  
Sbjct: 800  QQTPTLHPPRLPSPHPPLQPMTAPPSQNSAQPH---PQPSLHGQGPPGPHSLQTGPLLQH 856

Query: 201  PSSPNPFDLLP-------PATPRLAGANPFDLFQ 281
            P  P PF L P       P  P  A A+P    Q
Sbjct: 857  PGPPQPFGLTPQSSQGQGPLGPSPAAAHPHSTIQ 890

>PODXL_RABIT (Q28645) Podocalyxin-like protein 1 precursor|
          Length = 551

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +3

Query: 126 LPEPATPFGSVEGAAARGSSPFLTAPSSPNPFDLLPPATPRLAG 257
           +P P  P       A+  SSPF   PSSP+P   L P+ P  AG
Sbjct: 244 MPSPMPP-----SPASPSSSPF---PSSPSPSPALQPSGPSAAG 279

>HXA4_HUMAN (Q00056) Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)|
          Length = 320

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +3

Query: 120 GRLPEPATPFGSVEGAAARGSSPFLTAPSSPNPFD--LLPPATPRLAGANP 266
           GR P+P  P    +G A    +  +  P  P P     +PPA PR   A P
Sbjct: 111 GRPPQPEQPPAQAKGPAHGLHASHVLQPQPPPPLQPRAVPPAAPRRCEAAP 161

>RAD21_SCHPO (P30776) Cohesin subunit rad21 (Double-strand-break repair protein|
           rad21) (SCC1 homolog)
          Length = 628

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 132 EPATPFGSVEGAAARGSSPFLTAPSSPNPFDLLPP 236
           EPAT   S++G  A   S  LT P +   FDLL P
Sbjct: 99  EPATALQSLKGKDAVTQSANLTLPETITEFDLLVP 133

>BMP6_HUMAN (P22004) Bone morphogenetic protein 6 precursor (BMP-6)|
          Length = 513

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +2

Query: 110 QPARPPPGAGHPVR----LRRGSGGEGQQPV 190
           Q  +PPPGA HP+     L  GSG  G  P+
Sbjct: 170 QRRQPPPGAAHPLNRKSLLAPGSGSGGASPL 200


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,052,183
Number of Sequences: 219361
Number of extensions: 790994
Number of successful extensions: 4962
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4935
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)