ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart37a01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 143 bits (72), Expect = 7e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 240 acgccgcgcctcgccggcgccaaccccttcgacctcttccagcacttcaccagcgcgccc 299 |||||||||||| || ||||||||| |||||||||||||||||||||| ||||||||| Sbjct: 5859369 acgccgcgcctcacccacgccaacccgttcgacctcttccagcacttcagcagcgcgccg 5859428 Query: 300 gccagcccccggcgcgccgcggccatatacgcgcacttcgccgacgggggccacgg 355 ||||||||| |||||||||| ||||| ||||||||||||||||| |||||| |||| Sbjct: 5859429 gccagccccaggcgcgccgccgccatctacgcgcacttcgccgaggggggcaacgg 5859484 Score = 117 bits (59), Expect = 4e-23 Identities = 136/162 (83%), Gaps = 6/162 (3%) Strand = Plus / Plus Query: 387 gacgacgaggggttccacccgcgctcgtcctactccaccaccgcctcggccgtgccgttc 446 |||||||||||||||| ||||| |||| ||| || | ||||||| ||||||||||| Sbjct: 5859531 gacgacgaggggttccggccgcgggcgtcgtacaccgttaacgcctcgtccgtgccgttc 5859590 Query: 447 gactgggaggagaggcccgggacgcccaaggccgggat------gggcggcggcgaggcg 500 || ||||||||||||||||||||||| ||||||||| | |||||||||| ||| Sbjct: 5859591 gattgggaggagaggcccgggacgccgaaggccgggctcggtggcggcggcggcggcgcg 5859650 Query: 501 gcgtgggacacggacttcgagttcggcaccgtcgtcgacaag 542 |||||||| ||||||||||| |||||||| |||||||||||| Sbjct: 5859651 gcgtgggatacggacttcgaattcggcacggtcgtcgacaag 5859692 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 71 cgacagcgcggccgcgagcccgtacgccacggcgccgtccagcccgcacggccgcctc 128 ||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 5859233 cgacagcccggcggcgagcccgtacgccacggcgctgtccagcccgcgtggccgcctc 5859290 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 86 gagcccgtacgccacggcgccgtccagcccgcacggccgcctc 128 |||||||||| ||||||||||||| ||||||| |||||||||| Sbjct: 18459337 gagcccgtactccacggcgccgtctagcccgcgcggccgcctc 18459379 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 24 gaaatggaggtcatgatgcgccccgcctcgccgacgccgc 63 |||||||| || ||| ||||||||||||||||| |||||| Sbjct: 5859174 gaaatggaagtaatggtgcgccccgcctcgccgccgccgc 5859213 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 187 cgttcctgacggcgccgtcgtcgccgaacccgttcga 223 ||||| ||||||||||| ||||||| |||||||||| Sbjct: 5859301 cgttcttgacggcgccgccgtcgcctgacccgttcga 5859337
>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0701E03 Length = 183245 Score = 143 bits (72), Expect = 7e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 240 acgccgcgcctcgccggcgccaaccccttcgacctcttccagcacttcaccagcgcgccc 299 |||||||||||| || ||||||||| |||||||||||||||||||||| ||||||||| Sbjct: 174898 acgccgcgcctcacccacgccaacccgttcgacctcttccagcacttcagcagcgcgccg 174957 Query: 300 gccagcccccggcgcgccgcggccatatacgcgcacttcgccgacgggggccacgg 355 ||||||||| |||||||||| ||||| ||||||||||||||||| |||||| |||| Sbjct: 174958 gccagccccaggcgcgccgccgccatctacgcgcacttcgccgaggggggcaacgg 175013 Score = 117 bits (59), Expect = 4e-23 Identities = 136/162 (83%), Gaps = 6/162 (3%) Strand = Plus / Plus Query: 387 gacgacgaggggttccacccgcgctcgtcctactccaccaccgcctcggccgtgccgttc 446 |||||||||||||||| ||||| |||| ||| || | ||||||| ||||||||||| Sbjct: 175060 gacgacgaggggttccggccgcgggcgtcgtacaccgttaacgcctcgtccgtgccgttc 175119 Query: 447 gactgggaggagaggcccgggacgcccaaggccgggat------gggcggcggcgaggcg 500 || ||||||||||||||||||||||| ||||||||| | |||||||||| ||| Sbjct: 175120 gattgggaggagaggcccgggacgccgaaggccgggctcggtggcggcggcggcggcgcg 175179 Query: 501 gcgtgggacacggacttcgagttcggcaccgtcgtcgacaag 542 |||||||| ||||||||||| |||||||| |||||||||||| Sbjct: 175180 gcgtgggatacggacttcgaattcggcacggtcgtcgacaag 175221 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 71 cgacagcgcggccgcgagcccgtacgccacggcgccgtccagcccgcacggccgcctc 128 ||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 174762 cgacagcccggcggcgagcccgtacgccacggcgctgtccagcccgcgtggccgcctc 174819 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 24 gaaatggaggtcatgatgcgccccgcctcgccgacgccgc 63 |||||||| || ||| ||||||||||||||||| |||||| Sbjct: 174703 gaaatggaagtaatggtgcgccccgcctcgccgccgccgc 174742 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 187 cgttcctgacggcgccgtcgtcgccgaacccgttcga 223 ||||| ||||||||||| ||||||| |||||||||| Sbjct: 174830 cgttcttgacggcgccgccgtcgcctgacccgttcga 174866
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 143 bits (72), Expect = 7e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 240 acgccgcgcctcgccggcgccaaccccttcgacctcttccagcacttcaccagcgcgccc 299 |||||||||||| || ||||||||| |||||||||||||||||||||| ||||||||| Sbjct: 60144 acgccgcgcctcacccacgccaacccgttcgacctcttccagcacttcagcagcgcgccg 60203 Query: 300 gccagcccccggcgcgccgcggccatatacgcgcacttcgccgacgggggccacgg 355 ||||||||| |||||||||| ||||| ||||||||||||||||| |||||| |||| Sbjct: 60204 gccagccccaggcgcgccgccgccatctacgcgcacttcgccgaggggggcaacgg 60259 Score = 117 bits (59), Expect = 4e-23 Identities = 136/162 (83%), Gaps = 6/162 (3%) Strand = Plus / Plus Query: 387 gacgacgaggggttccacccgcgctcgtcctactccaccaccgcctcggccgtgccgttc 446 |||||||||||||||| ||||| |||| ||| || | ||||||| ||||||||||| Sbjct: 60306 gacgacgaggggttccggccgcgggcgtcgtacaccgttaacgcctcgtccgtgccgttc 60365 Query: 447 gactgggaggagaggcccgggacgcccaaggccgggat------gggcggcggcgaggcg 500 || ||||||||||||||||||||||| ||||||||| | |||||||||| ||| Sbjct: 60366 gattgggaggagaggcccgggacgccgaaggccgggctcggtggcggcggcggcggcgcg 60425 Query: 501 gcgtgggacacggacttcgagttcggcaccgtcgtcgacaag 542 |||||||| ||||||||||| |||||||| |||||||||||| Sbjct: 60426 gcgtgggatacggacttcgaattcggcacggtcgtcgacaag 60467 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 71 cgacagcgcggccgcgagcccgtacgccacggcgccgtccagcccgcacggccgcctc 128 ||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 60008 cgacagcccggcggcgagcccgtacgccacggcgctgtccagcccgcgtggccgcctc 60065 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 24 gaaatggaggtcatgatgcgccccgcctcgccgacgccgc 63 |||||||| || ||| ||||||||||||||||| |||||| Sbjct: 59949 gaaatggaagtaatggtgcgccccgcctcgccgccgccgc 59988 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 187 cgttcctgacggcgccgtcgtcgccgaacccgttcga 223 ||||| ||||||||||| ||||||| |||||||||| Sbjct: 60076 cgttcttgacggcgccgccgtcgcctgacccgttcga 60112
>dbj|AK070686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062N20, full insert sequence Length = 1595 Score = 143 bits (72), Expect = 7e-31 Identities = 105/116 (90%) Strand = Plus / Minus Query: 240 acgccgcgcctcgccggcgccaaccccttcgacctcttccagcacttcaccagcgcgccc 299 |||||||||||| || ||||||||| |||||||||||||||||||||| ||||||||| Sbjct: 1024 acgccgcgcctcacccacgccaacccgttcgacctcttccagcacttcagcagcgcgccg 965 Query: 300 gccagcccccggcgcgccgcggccatatacgcgcacttcgccgacgggggccacgg 355 ||||||||| |||||||||| ||||| ||||||||||||||||| |||||| |||| Sbjct: 964 gccagccccaggcgcgccgccgccatctacgcgcacttcgccgaggggggcaacgg 909 Score = 117 bits (59), Expect = 4e-23 Identities = 136/162 (83%), Gaps = 6/162 (3%) Strand = Plus / Minus Query: 387 gacgacgaggggttccacccgcgctcgtcctactccaccaccgcctcggccgtgccgttc 446 |||||||||||||||| ||||| |||| ||| || | ||||||| ||||||||||| Sbjct: 862 gacgacgaggggttccggccgcgggcgtcgtacaccgttaacgcctcgtccgtgccgttc 803 Query: 447 gactgggaggagaggcccgggacgcccaaggccgggat------gggcggcggcgaggcg 500 || ||||||||||||||||||||||| ||||||||| | |||||||||| ||| Sbjct: 802 gattgggaggagaggcccgggacgccgaaggccgggctcggtggcggcggcggcggcgcg 743 Query: 501 gcgtgggacacggacttcgagttcggcaccgtcgtcgacaag 542 |||||||| ||||||||||| |||||||| |||||||||||| Sbjct: 742 gcgtgggatacggacttcgaattcggcacggtcgtcgacaag 701 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 71 cgacagcgcggccgcgagcccgtacgccacggcgccgtccagcccgcacggccgcctc 128 ||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 1160 cgacagcccggcggcgagcccgtacgccacggcgctgtccagcccgcgtggccgcctc 1103 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Minus Query: 24 gaaatggaggtcatgatgcgccccgcctcgccgacgccgc 63 |||||||| || ||| ||||||||||||||||| |||||| Sbjct: 1219 gaaatggaagtaatggtgcgccccgcctcgccgccgccgc 1180 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 187 cgttcctgacggcgccgtcgtcgccgaacccgttcga 223 ||||| ||||||||||| ||||||| |||||||||| Sbjct: 1092 cgttcttgacggcgccgccgtcgcctgacccgttcga 1056
>ref|XM_467919.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1293 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Plus Query: 257 cgccaaccccttcgacctcttccagcacttcaccagcgcgcccgccagcccccggcgcgc 316 |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 234 cgccgacccgttcgacctcttccagcacttcaccagcgcgcccgccagcccggcgcgcgc 293 Query: 317 cgcggccatatacgcgcacttcg 339 ||| |||||||||||||| |||| Sbjct: 294 cgccgccatatacgcgcagttcg 316 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 436 ccgtgccgttcgactgggaggagaggcccggga 468 ||||||||||||||||||| |||| ||| |||| Sbjct: 428 ccgtgccgttcgactgggaagagaagccgggga 460
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 257 cgccaaccccttcgacctcttccagcacttcaccagcgcgcccgccagcccccggcgcgc 316 |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 32078549 cgccgacccgttcgacctcttccagcacttcaccagcgcgcccgccagcccggcgcgcgc 32078490 Query: 317 cgcggccatatacgcgcacttcg 339 ||| |||||||||||||| |||| Sbjct: 32078489 cgccgccatatacgcgcagttcg 32078467 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 436 ccgtgccgttcgactgggaggagaggcccggga 468 ||||||||||||||||||| |||| ||| |||| Sbjct: 32078355 ccgtgccgttcgactgggaagagaagccgggga 32078323
>dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0486G03 Length = 146713 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 257 cgccaaccccttcgacctcttccagcacttcaccagcgcgcccgccagcccccggcgcgc 316 |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 15205 cgccgacccgttcgacctcttccagcacttcaccagcgcgcccgccagcccggcgcgcgc 15146 Query: 317 cgcggccatatacgcgcacttcg 339 ||| |||||||||||||| |||| Sbjct: 15145 cgccgccatatacgcgcagttcg 15123 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 436 ccgtgccgttcgactgggaggagaggcccggga 468 ||||||||||||||||||| |||| ||| |||| Sbjct: 15011 ccgtgccgttcgactgggaagagaagccgggga 14979
>dbj|AP005773.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0085C03 Length = 188905 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 86 gagcccgtacgccacggcgccgtccagcccgcacggccgcctc 128 |||||||||| ||||||||||||| ||||||| |||||||||| Sbjct: 42220 gagcccgtactccacggcgccgtctagcccgcgcggccgcctc 42262
>emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032D24, complete sequence Length = 132465 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 86 gagcccgtacgccacggcgccgtccagcccgcacggccgcctc 128 |||||||||| ||||||||||||| ||||||| || ||||||| Sbjct: 49101 gagcccgtactccacggcgccgtctagcccgcgcgaccgcctc 49059
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 86 gagcccgtacgccacggcgccgtccagcccgcacggccgcctc 128 |||||||||| ||||||||||||| ||||||| || ||||||| Sbjct: 12375074 gagcccgtactccacggcgccgtctagcccgcgcgaccgcctc 12375032 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 tgacggcgccgtcgtcgccg 212 |||||||||||||||||||| Sbjct: 31443156 tgacggcgccgtcgtcgccg 31443175
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 425 caccgcctcggccgtgccgttcga 448 |||||||||||||||||||||||| Sbjct: 2106853 caccgcctcggccgtgccgttcga 2106876 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 40 tgcgccccgcctcgccgacgccgca 64 ||||| ||||||||||||||||||| Sbjct: 2195682 tgcgcgccgcctcgccgacgccgca 2195706
>gb|AF213938.1|AF213938 Prunus dulcis proline-rich protein (PRP) mRNA, partial cds Length = 228 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 151 gctccgtcgagggagcggcggcgaggg 177 |||||| |||||||||||||||||||| Sbjct: 215 gctccggcgagggagcggcggcgaggg 189
>gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0074N12, complete sequence Length = 187972 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 84 gcgagcccgtacgccacggcgccgtc 109 |||||||||||||||||||| ||||| Sbjct: 171358 gcgagcccgtacgccacggcaccgtc 171383
>gb|AY360389.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0024A05, complete sequence Length = 82985 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 84 gcgagcccgtacgccacggcgccgtc 109 |||||||||||||||||||| ||||| Sbjct: 79511 gcgagcccgtacgccacggcaccgtc 79486
>ref|XM_850140.1| PREDICTED: Canis familiaris cardiac hyperpolarization-activated current subunit 2 (HCN2), mRNA Length = 2514 Score = 44.1 bits (22), Expect = 0.47 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Plus Query: 292 gcgcgcccgccagcccccggcgcgccgcgg 321 |||||||||||||||||||| ||||||||| Sbjct: 2159 gcgcgcccgccagcccccgg-gcgccgcgg 2187
>emb|AJ404229.1|RSP404229 Rhodobacter sphaeroides McpJ gene for putative receptor protein Length = 2046 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 46 ccgcctcgccgacgccgcaccggccc 71 |||||||||||||||||| ||||||| Sbjct: 1509 ccgcctcgccgacgccgccccggccc 1534
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 485 gggcggcggcgaggcggcgtgg 506 |||||||||||||||||||||| Sbjct: 16775607 gggcggcggcgaggcggcgtgg 16775628
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 84 gcgagcccgtacgccacggcgccgtc 109 |||||||||||||||||||| ||||| Sbjct: 12834179 gcgagcccgtacgccacggcaccgtc 12834204 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gccgccggccacgccgcgcc 249 |||||||||||||||||||| Sbjct: 4319987 gccgccggccacgccgcgcc 4319968
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 68 gcccgacagcgcggccgcgagc 89 |||||||||||||||||||||| Sbjct: 713371 gcccgacagcgcggccgcgagc 713392 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 gacagcgcggccgcgagccc 91 |||||||||||||||||||| Sbjct: 408728 gacagcgcggccgcgagccc 408709
>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0047B10 Length = 158798 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 485 gggcggcggcgaggcggcgtgg 506 |||||||||||||||||||||| Sbjct: 124301 gggcggcggcgaggcggcgtgg 124322
>dbj|AP005693.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0061E21 Length = 155085 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 84 gcgagcccgtacgccacggcgccgtc 109 |||||||||||||||||||| ||||| Sbjct: 34697 gcgagcccgtacgccacggcaccgtc 34722
>dbj|AP005166.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0058D03 Length = 184235 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 84 gcgagcccgtacgccacggcgccgtc 109 |||||||||||||||||||| ||||| Sbjct: 178174 gcgagcccgtacgccacggcaccgtc 178199
>dbj|AK111342.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-F09, full insert sequence Length = 1289 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 485 gggcggcggcgaggcggcgtgg 506 |||||||||||||||||||||| Sbjct: 1074 gggcggcggcgaggcggcgtgg 1095
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 42 cgccccgcctcgccgacgccgc 63 |||||||||||||||||||||| Sbjct: 3170358 cgccccgcctcgccgacgccgc 3170337
>emb|X73148.1|SGDNAORF S.griseus DNA sequence for ORF's 1-6 Length = 4584 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 119 cggccgcctcccggagccggccacc 143 |||||||||||||||||||| |||| Sbjct: 1095 cggccgcctcccggagccgggcacc 1071
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 acctcttccagcacttcacca 291 ||||||||||||||||||||| Sbjct: 1573373 acctcttccagcacttcacca 1573353
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 tgacggcgccgtcgtcgccga 213 ||||||||||||||||||||| Sbjct: 1380162 tgacggcgccgtcgtcgccga 1380182 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cgcccgccagcccccggcgc 314 |||||||||||||||||||| Sbjct: 1968621 cgcccgccagcccccggcgc 1968640
>gb|AF076784.1|AF076784 Oryctolagus cuniculus serum amyloid A-activating factor SAF-1 mRNA, complete cds Length = 2535 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 cgacgggggccacggcgaccg 361 ||||||||||||||||||||| Sbjct: 545 cgacgggggccacggcgaccg 525
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 acctcttccagcacttcacca 291 ||||||||||||||||||||| Sbjct: 1573373 acctcttccagcacttcacca 1573353
>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183385 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 271 acctcttccagcacttcacca 291 ||||||||||||||||||||| Sbjct: 52359 acctcttccagcacttcacca 52379
>dbj|AB047388.1| Dugesia dorotocephala mRNA for Vasa-related protein PlVAS1, partial cds Length = 1852 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 287 caccagcgcgcccgccagccc 307 ||||||||||||||||||||| Sbjct: 1462 caccagcgcgcccgccagccc 1442
>gb|AE010344.1| Methanopyrus kandleri AV19 section 43 of 157 of the complete genome Length = 11667 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 acctcttccagcacttcacc 290 |||||||||||||||||||| Sbjct: 2697 acctcttccagcacttcacc 2716
>ref|NM_188763.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 ccgccggccacgccgcgcctcgccggcg 258 |||| |||| |||||||||||||||||| Sbjct: 86 ccgctggccgcgccgcgcctcgccggcg 113
>ref|XM_512217.1| PREDICTED: Pan troglodytes LOC455529 (LOC455529), mRNA Length = 15756 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 gcgcgcccgccagcccccgg 311 |||||||||||||||||||| Sbjct: 15431 gcgcgcccgccagcccccgg 15450
>ref|XM_480323.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1410 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gccgccggccacgccgcgcc 249 |||||||||||||||||||| Sbjct: 342 gccgccggccacgccgcgcc 323
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 gcccgacagcgcggccgcga 87 |||||||||||||||||||| Sbjct: 3451754 gcccgacagcgcggccgcga 3451735
>gb|AE007216.1| Sinorhizobium meliloti 1021 plasmid pSymA section 22 of 121 of the complete plasmid sequence Length = 10470 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 428 cgcctcggccgtgccgttcgactg 451 |||||||||| ||||||||||||| Sbjct: 5858 cgcctcggccatgccgttcgactg 5881
>gb|AC135398.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079N13, complete sequence Length = 140946 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 cgcctcgccgacgccgcaccggcc 70 |||||||||| ||||||||||||| Sbjct: 69566 cgcctcgccgccgccgcaccggcc 69543
>gb|AY329365.1| Gallus gallus shaker subfamily potassium channel Kv1.5 alpha subunit gene, partial cds Length = 872 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 ggcggcggcgaggcggcgtg 505 |||||||||||||||||||| Sbjct: 17 ggcggcggcgaggcggcgtg 36
>gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic gene cluster Length = 109528 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 acagcgcggccgcgagcccg 92 |||||||||||||||||||| Sbjct: 69330 acagcgcggccgcgagcccg 69311
>emb|CT009567.9| Mouse DNA sequence from clone RP23-50H13 on chromosome 16, complete sequence Length = 213704 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 ccacgccgcgcctcgccggc 257 |||||||||||||||||||| Sbjct: 116508 ccacgccgcgcctcgccggc 116489
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence Length = 182756 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 ccgccggccacgccgcgcctcgccggcg 258 |||| |||| |||||||||||||||||| Sbjct: 25205 ccgctggccgcgccgcgcctcgccggcg 25232
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 cacggcgccgtccagcccgc 117 |||||||||||||||||||| Sbjct: 1366034 cacggcgccgtccagcccgc 1366053
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ctgacggcgccgtcgtcgcc 211 |||||||||||||||||||| Sbjct: 264911 ctgacggcgccgtcgtcgcc 264892
>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08, complete sequence Length = 148860 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 tgacggcgccgtcgtcgccg 212 |||||||||||||||||||| Sbjct: 139964 tgacggcgccgtcgtcgccg 139983
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence Length = 164805 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 tgacggcgccgtcgtcgccg 212 |||||||||||||||||||| Sbjct: 20839 tgacggcgccgtcgtcgccg 20858
>emb|AJ223012.1|AMM223012 Amycolatopsis mediterranei genes encoding rifamycin polyketide synthases, ORFs 1 to 5 Length = 53784 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 acagcgcggccgcgagcccg 92 |||||||||||||||||||| Sbjct: 52925 acagcgcggccgcgagcccg 52906
>emb|AJ012582.1|HSA012582 Homo sapiens mRNA for hyperpolarization-activated cation channel HCN2 Length = 3459 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 gcgcgcccgccagcccccgg 311 |||||||||||||||||||| Sbjct: 2398 gcgcgcccgccagcccccgg 2417
>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10 Length = 150379 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 ccgccggccacgccgcgcctcgccggcg 258 |||| |||| |||||||||||||||||| Sbjct: 57743 ccgctggccgcgccgcgcctcgccggcg 57770
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 ttcgagttcggcaccgtcgtcgac 539 ||||||||||||||||||| |||| Sbjct: 3080357 ttcgagttcggcaccgtcgccgac 3080380 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 ctgacggcgccgtcgtcgcc 211 |||||||||||||||||||| Sbjct: 522408 ctgacggcgccgtcgtcgcc 522427
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 cggcgccgtcgtcgccgaac 215 |||||||||||||||||||| Sbjct: 158971 cggcgccgtcgtcgccgaac 158990
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cggcgccgtcgtcgccgaac 215 |||||||||||||||||||| Sbjct: 3400328 cggcgccgtcgtcgccgaac 3400309
>gb|AF289056.1|AF289056 Lymantria xylina nucleopolyhedrovirus GP64-like gene sequence Length = 2064 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 ccaccaccgcctcggccgtg 440 |||||||||||||||||||| Sbjct: 1752 ccaccaccgcctcggccgtg 1733
>gb|AY613954.1| Takifugu rubripes XK-related protein 2b mRNA, complete cds Length = 2171 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 cgtcctactccaccaccgcc 431 |||||||||||||||||||| Sbjct: 1387 cgtcctactccaccaccgcc 1406
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 cgcctcgccgacgccgcaccggcc 70 |||||||||| ||||||||||||| Sbjct: 15817872 cgcctcgccgccgccgcaccggcc 15817849
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 ccgccggccacgccgcgcctcgccggcg 258 |||| |||| |||||||||||||||||| Sbjct: 8061092 ccgctggccgcgccgcgcctcgccggcg 8061119
>gb|AC139426.2| Homo sapiens chromosome 15, clone RP13-395E19, complete sequence Length = 188448 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 gcgcgcccgccagcccccgg 311 |||||||||||||||||||| Sbjct: 95831 gcgcgcccgccagcccccgg 95850
>gb|AC135731.6| Homo sapiens chromosome 15, clone RP11-261B23, complete sequence Length = 123089 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 gcgcgcccgccagcccccgg 311 |||||||||||||||||||| Sbjct: 97375 gcgcgcccgccagcccccgg 97356
>gb|AC021413.16| Homo sapiens chromosome 15, clone RP11-30N16, complete sequence Length = 199198 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 gcgcgcccgccagcccccgg 311 |||||||||||||||||||| Sbjct: 180147 gcgcgcccgccagcccccgg 180128
>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03 Length = 183623 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gccgccggccacgccgcgcc 249 |||||||||||||||||||| Sbjct: 82781 gccgccggccacgccgcgcc 82762
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 ccaccgcctcggccgtgccg 443 |||||||||||||||||||| Sbjct: 942453 ccaccgcctcggccgtgccg 942434
>emb|X56563.1|RMISRM1 R.meliloti insertion sequence ISRM1 DNA Length = 1319 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 428 cgcctcggccgtgccgttcgactg 451 |||||||||| ||||||||||||| Sbjct: 1119 cgcctcggccatgccgttcgactg 1096
>gb|AF065164.2|AF065164 Homo sapiens hyperpolarization-activated, cyclic nucleotide-gated channel 2 (HCN2) mRNA, complete cds Length = 3372 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 gcgcgcccgccagcccccgg 311 |||||||||||||||||||| Sbjct: 2380 gcgcgcccgccagcccccgg 2399
>dbj|AK062972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E06, full insert sequence Length = 942 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 ccgccggccacgccgcgcctcgccggcg 258 |||| |||| |||||||||||||||||| Sbjct: 235 ccgctggccgcgccgcgcctcgccggcg 262
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 acgccacggcgccgtccagc 113 |||||||||||||||||||| Sbjct: 884152 acgccacggcgccgtccagc 884171
>gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, complete genome Length = 161046 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 ccaccaccgcctcggccgtg 440 |||||||||||||||||||| Sbjct: 128019 ccaccaccgcctcggccgtg 128000
>emb|AJ133734.1|HSA133734 Homo sapiens HCN2 gene, exon 8 Length = 1512 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 gcgcgcccgccagcccccgg 311 |||||||||||||||||||| Sbjct: 504 gcgcgcccgccagcccccgg 523
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 cgccgtcgtcgccgaacccg 218 |||||||||||||||||||| Sbjct: 113073 cgccgtcgtcgccgaacccg 113054
>ref|NM_001194.2| Homo sapiens hyperpolarization activated cyclic nucleotide-gated potassium channel 2 (HCN2), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 gcgcgcccgccagcccccgg 311 |||||||||||||||||||| Sbjct: 2398 gcgcgcccgccagcccccgg 2417
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 cggccgtgccgttcgactgg 452 |||||||||||||||||||| Sbjct: 2145641 cggccgtgccgttcgactgg 2145660
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 cctgccgccggccacgccgc 246 |||||||||||||||||||| Sbjct: 1744991 cctgccgccggccacgccgc 1744972
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 cgcctcgccgacgccgcaccggcc 70 |||||||||| ||||||||||||| Sbjct: 15905249 cgcctcgccgccgccgcaccggcc 15905226
>gb|AC004449.1|AC004449 Homo sapiens chromosome 19, cosmid R33683, complete sequence Length = 38186 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 gcgcgcccgccagcccccgg 311 |||||||||||||||||||| Sbjct: 5213 gcgcgcccgccagcccccgg 5232
>gb|AF017357.1|AF017357 Oryza sativa low molecular early light-inducible protein mRNA, complete cds Length = 883 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 ccgccggccacgccgcgcctcgccggcg 258 |||| |||| |||||||||||||||||| Sbjct: 211 ccgctggccgcgccgcgcctcgccggcg 238 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,793,680 Number of Sequences: 3902068 Number of extensions: 3793680 Number of successful extensions: 123668 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118396 Number of HSP's gapped (non-prelim): 5268 length of query: 545 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 522 effective length of database: 17,143,297,704 effective search space: 8948801401488 effective search space used: 8948801401488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
