ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart36h07 |
|---|---|
| Clone Library Name | barley_pub |
>CHIB_POPTR (P29031) Acidic endochitinase WIN6.2B precursor (EC 3.2.1.14)| Length = 303 Score = 34.7 bits (78), Expect = 0.19 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +3 Query: 435 ITDFFKVYQFENLFAKRNFPVAQAVGFWDYQAFITAASLF 554 ++D F+++ RN P AVGF+ Y AFI+AA F Sbjct: 85 LSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEF 124
>CHIC_POPTR (P29032) Acidic endochitinase WIN6.2C precursor (EC 3.2.1.14)| (Fragment) Length = 121 Score = 33.5 bits (75), Expect = 0.42 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = +3 Query: 435 ITDFFKVYQFENLFAKRNFPVAQAVGFWDYQAFITAASLF 554 ++D F+ L RN P AVGF+ Y AFI+AA F Sbjct: 82 LSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121
>CHID_LYCES (Q05537) Basic endochitinase (EC 3.2.1.14) (Fragment)| Length = 246 Score = 32.7 bits (73), Expect = 0.72 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +3 Query: 426 NQTITDFFKVYQFENLFAKRNFPVAQAVGFWDYQAFITAASLF 554 +Q I+ FE + RN A GF+ Y+AFITA F Sbjct: 2 SQNISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTF 44
>CHIC_SECCE (Q9FRV0) Basic endochitinase C precursor (EC 3.2.1.14) (Rye seed| chitinase-c) (RSC-c) Length = 266 Score = 32.7 bits (73), Expect = 0.72 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +3 Query: 459 QFENLFAKRNFPVAQAVGFWDYQAFITAASLF 554 QF+ + RN QA GF+ Y AF+ AA+ F Sbjct: 33 QFDRMLLHRNDGACQAKGFYTYDAFVAAANAF 64
>CHI2_HORVU (P23951) 26 kDa endochitinase 2 precursor (EC 3.2.1.14) (CHI-26)| Length = 266 Score = 32.7 bits (73), Expect = 0.72 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +3 Query: 459 QFENLFAKRNFPVAQAVGFWDYQAFITAASLF 554 QF+ + RN QA GF+ Y AF+ AA+ F Sbjct: 33 QFDRMLLHRNDGACQAKGFYTYDAFVAAAAAF 64
>CHI2_PEA (P21226) Endochitinase A2 precursor (EC 3.2.1.14)| Length = 324 Score = 32.7 bits (73), Expect = 0.72 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 13/72 (18%) Frame = +3 Query: 384 CNK-GWECSGTKYC---CNQ---------TITDFFKVYQFENLFAKRNFPVAQAVGFWDY 524 C+K GW S ++YC C T++ F N+ RN Q F+ Y Sbjct: 38 CSKFGWCGSTSEYCGDGCQSQCSGSSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTY 97 Query: 525 QAFITAASLFEN 560 AF++AA F N Sbjct: 98 DAFLSAAKAFPN 109
>CHI2_BRANA (Q09023) Endochitinase CH25 precursor (EC 3.2.1.14)| Length = 322 Score = 32.3 bits (72), Expect = 0.94 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +3 Query: 399 ECSGTKYCCNQTITDFFKVYQFENLFAKRNFPVAQAVGFWDYQAFITAASLF 554 +C GT ++ QF+++ RN A GF+ Y AFI AA F Sbjct: 59 QCGGTPPGPTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSF 110
>CHIB_ARATH (P19171) Basic endochitinase B precursor (EC 3.2.1.14)| (Pathogenesis-related protein 3) (PR-3) (AtChiB) Length = 335 Score = 32.3 bits (72), Expect = 0.94 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = +3 Query: 459 QFENLFAKRNFPVAQAVGFWDYQAFITAASLF 554 QF+++ RN A GF+ Y AFITAA F Sbjct: 94 QFDDMLKHRNDAACPARGFYTYNAFITAAKSF 125
>CHI1_HORVU (P11955) 26 kDa endochitinase 1 precursor (EC 3.2.1.14)| Length = 318 Score = 32.0 bits (71), Expect = 1.2 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +3 Query: 462 FENLFAKRNFPVAQAVGFWDYQAFITAASLF 554 F+ + RN QA GF+ Y AF+ AAS F Sbjct: 86 FDRMLLHRNDGACQAKGFYTYDAFVAAASAF 116
>CHIA_SECCE (Q9FRV1) Basic endochitinase A precursor (EC 3.2.1.14) (Rye seed| chitinase-a) (RSC-a) Length = 321 Score = 30.4 bits (67), Expect = 3.6 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 462 FENLFAKRNFPVAQAVGFWDYQAFITAASLF 554 F+ + RN QA GF+ Y AF+ AA F Sbjct: 89 FDRMLLHRNDGACQAKGFYTYDAFVAAAGAF 119
>CHIA_LYCES (Q05539) Acidic 26 kDa endochitinase precursor (EC 3.2.1.14)| Length = 253 Score = 30.0 bits (66), Expect = 4.6 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +3 Query: 462 FENLFAKRNFPVAQAVGFWDYQAFITAASLF 554 FE + + RN A GF+ Y AFI AA+ F Sbjct: 36 FEQMLSFRNNDACPAKGFYTYDAFIAAANSF 66
>CHIA_LYCCI (Q40114) Acidic endochitinase pcht28 precursor (EC 3.2.1.14)| Length = 253 Score = 30.0 bits (66), Expect = 4.6 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +3 Query: 462 FENLFAKRNFPVAQAVGFWDYQAFITAASLF 554 FE + + RN A GF+ Y AFI AA+ F Sbjct: 36 FEQMLSFRNNDACPAKGFYTYDAFIAAANSF 66
>YE1A_CAEEL (Q5FC62) Hypothetical protein C35A5.10| Length = 286 Score = 29.6 bits (65), Expect = 6.1 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +3 Query: 384 CNKGWECSGTKYCCNQTITDFFKV 455 C+ G+EC GT YCC + K+ Sbjct: 235 CSAGYECMGTGYCCPSQVLSTTKL 258
>CHI6_POPTR (P16579) Acidic endochitinase WIN6 precursor (EC 3.2.1.14)| Length = 340 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +3 Query: 435 ITDFFKVYQFENLFAKRNFPVAQAVGFWDYQAFITAASLF 554 ++D +F+ L RN A GF+ Y AFI+AA F Sbjct: 89 LSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEF 128 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,573,338 Number of Sequences: 219361 Number of extensions: 585558 Number of successful extensions: 2689 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2558 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2687 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
