Clone Name | bart36g03 |
---|---|
Clone Library Name | barley_pub |
>gb|AY736119.1| Triticum aestivum 20S proteasome beta 5 subunit mRNA, complete cds Length = 860 Score = 583 bits (294), Expect = e-163 Identities = 318/326 (97%) Strand = Plus / Plus Query: 1 gccgaccagctcgccctcgagttccccacctgcaacgacttcgatgggttccagaaggca 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 100 gccgaccagctcgccctcgagttccccacctgcaacgacttcgatgggttccagaaggcg 159 Query: 61 accaaggagatggtcaacaacaagaaggggacgaccacgctctccttcatcttcgacaag 120 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 160 accaaggagatggtgaacaacaagaaggggaccaccacgctctccttcatcttcgacaag 219 Query: 121 ggcgtcatcgtcgccgacgactcccgggccagcatgggcggctacatctcttcacaaact 180 |||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 220 ggcgtcatcgtcgccgccgactcccgggccagcatgggcggctacatatcttcgcaaact 279 Query: 181 gtgaggaaaatcattgagattaatccctacatgctgggaaccatggctggaggtgctgct 240 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 280 gtgaggaaaatcatcgagattaatccctacatgctgggaaccatggctggaggtgctgct 339 Query: 241 gattgccaattttggcatagaaacttgggggtcaagtgccggctccatgagctcgcgaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 340 gattgccaattttggcatagaaacttgggggtcaagtgccggctccatgagctcgcgaac 399 Query: 301 aaacggaggatctccattgctggttc 326 || ||||||||||||||||||||||| Sbjct: 400 aagcggaggatctccattgctggttc 425
>dbj|AK104520.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E06, full insert sequence Length = 1099 Score = 343 bits (173), Expect = 2e-91 Identities = 260/289 (89%) Strand = Plus / Plus Query: 36 cgacttcgatgggttccagaaggcaaccaaggagatggtcaacaacaagaaggggacgac 95 ||||||||| ||||||||||||| |||||||||||| | || |||||||||| ||||| Sbjct: 182 cgacttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgac 241 Query: 96 cacgctctccttcatcttcgacaagggcgtcatcgtcgccgacgactcccgggccagcat 155 ||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct: 242 cacgctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcat 301 Query: 156 gggcggctacatctcttcacaaactgtgaggaaaatcattgagattaatccctacatgct 215 |||||| ||||| ||||| ||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 302 gggcggatacatatcttcgcaaactgtgaggaaaattattgaaataaatccgtacatgct 361 Query: 216 gggaaccatggctggaggtgctgctgattgccaattttggcatagaaacttgggggtcaa 275 ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||| |||| Sbjct: 362 tggaacaatggcaggaggtgctgctgattgtcaattttggcataggaacttgggcatcaa 421 Query: 276 gtgccggctccatgagctcgcgaacaaacggaggatctccattgctggt 324 |||||| |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 422 gtgccgactccatgagctcgcgaacaagcggaggatctctattgctggt 470
>dbj|AK104361.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C04, full insert sequence Length = 1099 Score = 343 bits (173), Expect = 2e-91 Identities = 260/289 (89%) Strand = Plus / Plus Query: 36 cgacttcgatgggttccagaaggcaaccaaggagatggtcaacaacaagaaggggacgac 95 ||||||||| ||||||||||||| |||||||||||| | || |||||||||| ||||| Sbjct: 182 cgacttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgac 241 Query: 96 cacgctctccttcatcttcgacaagggcgtcatcgtcgccgacgactcccgggccagcat 155 ||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct: 242 cacgctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcat 301 Query: 156 gggcggctacatctcttcacaaactgtgaggaaaatcattgagattaatccctacatgct 215 |||||| ||||| ||||| ||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 302 gggcggatacatatcttcgcaaactgtgaggaaaattattgaaataaatccgtacatgct 361 Query: 216 gggaaccatggctggaggtgctgctgattgccaattttggcatagaaacttgggggtcaa 275 ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||| |||| Sbjct: 362 tggaacaatggcaggaggtgctgctgattgtcaattttggcataggaacttgggcatcaa 421 Query: 276 gtgccggctccatgagctcgcgaacaaacggaggatctccattgctggt 324 |||||| |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 422 gtgccgactccatgagctcgcgaacaagcggaggatctctattgctggt 470
>dbj|AK071652.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099E18, full insert sequence Length = 1217 Score = 343 bits (173), Expect = 2e-91 Identities = 260/289 (89%) Strand = Plus / Plus Query: 36 cgacttcgatgggttccagaaggcaaccaaggagatggtcaacaacaagaaggggacgac 95 ||||||||| ||||||||||||| |||||||||||| | || |||||||||| ||||| Sbjct: 187 cgacttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgac 246 Query: 96 cacgctctccttcatcttcgacaagggcgtcatcgtcgccgacgactcccgggccagcat 155 ||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct: 247 cacgctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcat 306 Query: 156 gggcggctacatctcttcacaaactgtgaggaaaatcattgagattaatccctacatgct 215 |||||| ||||| ||||| ||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 307 gggcggatacatatcttcgcaaactgtgaggaaaattattgaaataaatccgtacatgct 366 Query: 216 gggaaccatggctggaggtgctgctgattgccaattttggcatagaaacttgggggtcaa 275 ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||| |||| Sbjct: 367 tggaacaatggcaggaggtgctgctgattgtcaattttggcataggaacttgggcatcaa 426 Query: 276 gtgccggctccatgagctcgcgaacaaacggaggatctccattgctggt 324 |||||| |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 427 gtgccgactccatgagctcgcgaacaagcggaggatctctattgctggt 475
>dbj|AB026567.1| Oryza sativa (japonica cultivar-group) OsPBE1 mRNA for beta 5 subunit of 20S proteasome, complete cds Length = 1233 Score = 343 bits (173), Expect = 2e-91 Identities = 260/289 (89%) Strand = Plus / Plus Query: 36 cgacttcgatgggttccagaaggcaaccaaggagatggtcaacaacaagaaggggacgac 95 ||||||||| ||||||||||||| |||||||||||| | || |||||||||| ||||| Sbjct: 181 cgacttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgac 240 Query: 96 cacgctctccttcatcttcgacaagggcgtcatcgtcgccgacgactcccgggccagcat 155 ||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct: 241 cacgctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcat 300 Query: 156 gggcggctacatctcttcacaaactgtgaggaaaatcattgagattaatccctacatgct 215 |||||| ||||| ||||| ||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 301 gggcggatacatatcttcgcaaactgtgaggaaaattattgaaataaatccgtacatgct 360 Query: 216 gggaaccatggctggaggtgctgctgattgccaattttggcatagaaacttgggggtcaa 275 ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||| |||| Sbjct: 361 tggaacaatggcaggaggtgctgctgattgtcaattttggcataggaacttgggcatcaa 420 Query: 276 gtgccggctccatgagctcgcgaacaaacggaggatctccattgctggt 324 |||||| |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 421 gtgccgactccatgagctcgcgaacaagcggaggatctctattgctggt 469
>gb|BT016601.1| Zea mays clone Contig434 mRNA sequence Length = 1072 Score = 266 bits (134), Expect = 4e-68 Identities = 260/302 (86%) Strand = Plus / Plus Query: 23 tccccacctgcaacgacttcgatgggttccagaaggcaaccaaggagatggtcaacaaca 82 |||||| |||| |||||||||| || |||||| ||| |||||||| ||||| || || | Sbjct: 180 tccccatctgcgacgacttcgacggcttccaggcggccaccaaggatatggtgaagaata 239 Query: 83 agaaggggacgaccacgctctccttcatcttcgacaagggcgtcatcgtcgccgacgact 142 ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || | Sbjct: 240 agaaggggacgaccacgcttgccttcatcttcgacaagggcgtcatcgtcgccgctgatt 299 Query: 143 cccgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagatta 202 || |||||||||||||||| || || || |||||||| ||||||||||| ||||| || | Sbjct: 300 ccagggccagcatgggcggttatatatcctcacaaaccgtgaggaaaattattgaaataa 359 Query: 203 atccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaa 262 |||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| | Sbjct: 360 atccttacatgctggggacaatggctggaggtgctgctgattgccaattttggcatagga 419 Query: 263 acttgggggtcaagtgccggctccatgagctcgcgaacaaacggaggatctccattgctg 322 || | || |||||| || ||||||||||| | ||||| || |||||||| ||||||| Sbjct: 420 acctaggaaccaagtgtcgtctccatgagctttcaaacaagcgaaggatctctattgctg 479 Query: 323 gt 324 || Sbjct: 480 gt 481
>gb|AY103704.1| Zea mays PCO130904 mRNA sequence Length = 1115 Score = 266 bits (134), Expect = 4e-68 Identities = 260/302 (86%) Strand = Plus / Plus Query: 23 tccccacctgcaacgacttcgatgggttccagaaggcaaccaaggagatggtcaacaaca 82 |||||| |||| |||||||||| || |||||| ||| |||||||| ||||| || || | Sbjct: 205 tccccatctgcgacgacttcgacggcttccaggcggccaccaaggatatggtgaagaata 264 Query: 83 agaaggggacgaccacgctctccttcatcttcgacaagggcgtcatcgtcgccgacgact 142 ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || | Sbjct: 265 agaaggggacgaccacgcttgccttcatcttcgacaagggcgtcatcgtcgccgctgatt 324 Query: 143 cccgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagatta 202 || |||||||||||||||| || || || |||||||| ||||||||||| ||||| || | Sbjct: 325 ccagggccagcatgggcggttatatatcctcacaaaccgtgaggaaaattattgaaataa 384 Query: 203 atccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaa 262 |||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| | Sbjct: 385 atccttacatgctggggacaatggctggaggtgctgctgattgccaattttggcatagga 444 Query: 263 acttgggggtcaagtgccggctccatgagctcgcgaacaaacggaggatctccattgctg 322 || | || |||||| || ||||||||||| | ||||| || |||||||| ||||||| Sbjct: 445 acctaggaaccaagtgtcgtctccatgagctttcaaacaagcgaaggatctctattgctg 504 Query: 323 gt 324 || Sbjct: 505 gt 506
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 151 bits (76), Expect = 2e-33 Identities = 115/128 (89%) Strand = Plus / Minus Query: 40 ttcgatgggttccagaaggcaaccaaggagatggtcaacaacaagaaggggacgaccacg 99 ||||| ||||||||||||| |||||||||||| | || |||||||||| ||||||||| Sbjct: 2772703 ttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgaccacg 2772644 Query: 100 ctctccttcatcttcgacaagggcgtcatcgtcgccgacgactcccgggccagcatgggc 159 ||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct: 2772643 ctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcatgggc 2772584 Query: 160 ggctacat 167 || ||||| Sbjct: 2772583 ggatacat 2772576 Score = 119 bits (60), Expect = 6e-24 Identities = 90/100 (90%) Strand = Plus / Minus Query: 170 cttcacaaactgtgaggaaaatcattgagattaatccctacatgctgggaaccatggctg 229 |||| ||||||||||||||||| ||||| || ||||| |||||||| ||||| ||||| | Sbjct: 2771656 cttcgcaaactgtgaggaaaattattgaaataaatccgtacatgcttggaacaatggcag 2771597 Query: 230 gaggtgctgctgattgccaattttggcatagaaacttggg 269 |||||||||||||||| |||||||||||||| |||||||| Sbjct: 2771596 gaggtgctgctgattgtcaattttggcataggaacttggg 2771557 Score = 75.8 bits (38), Expect = 8e-11 Identities = 47/50 (94%) Strand = Plus / Minus Query: 275 agtgccggctccatgagctcgcgaacaaacggaggatctccattgctggt 324 ||||||| |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 2771481 agtgccgactccatgagctcgcgaacaagcggaggatctctattgctggt 2771432
>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0085L11 Length = 148142 Score = 151 bits (76), Expect = 2e-33 Identities = 115/128 (89%) Strand = Plus / Minus Query: 40 ttcgatgggttccagaaggcaaccaaggagatggtcaacaacaagaaggggacgaccacg 99 ||||| ||||||||||||| |||||||||||| | || |||||||||| ||||||||| Sbjct: 16184 ttcgacgggttccagaaggagaccaaggagatgctgaagcacaagaagggaacgaccacg 16125 Query: 100 ctctccttcatcttcgacaagggcgtcatcgtcgccgacgactcccgggccagcatgggc 159 ||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct: 16124 ctcgcgttcatcttcgacaagggcgtcatcgtcgccgccgactcccgcgccagcatgggc 16065 Query: 160 ggctacat 167 || ||||| Sbjct: 16064 ggatacat 16057 Score = 119 bits (60), Expect = 6e-24 Identities = 90/100 (90%) Strand = Plus / Minus Query: 170 cttcacaaactgtgaggaaaatcattgagattaatccctacatgctgggaaccatggctg 229 |||| ||||||||||||||||| ||||| || ||||| |||||||| ||||| ||||| | Sbjct: 15137 cttcgcaaactgtgaggaaaattattgaaataaatccgtacatgcttggaacaatggcag 15078 Query: 230 gaggtgctgctgattgccaattttggcatagaaacttggg 269 |||||||||||||||| |||||||||||||| |||||||| Sbjct: 15077 gaggtgctgctgattgtcaattttggcataggaacttggg 15038 Score = 75.8 bits (38), Expect = 8e-11 Identities = 47/50 (94%) Strand = Plus / Minus Query: 275 agtgccggctccatgagctcgcgaacaaacggaggatctccattgctggt 324 ||||||| |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 14962 agtgccgactccatgagctcgcgaacaagcggaggatctctattgctggt 14913
>gb|AY683448.1| Lemna minor 26S proteasome beta subunit mRNA, partial cds Length = 349 Score = 121 bits (61), Expect = 1e-24 Identities = 127/149 (85%) Strand = Plus / Plus Query: 142 tcccgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagatt 201 |||||||| |||||||| || || |||||||| || | |||| ||||||||| ||||| Sbjct: 71 tcccgggctagcatgggaggatatatctcttctcagtcggtgaagaaaatcatagagatc 130 Query: 202 aatccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcataga 261 || ||||||||||| || || ||||||||||| || || ||||||||||||||||||||| Sbjct: 131 aacccctacatgcttgggacaatggctggaggcgccgcagattgccaattttggcataga 190 Query: 262 aacttgggggtcaagtgccggctccatga 290 |||||||| |||||||||| || ||||| Sbjct: 191 aacttgggcatcaagtgccgcctgcatga 219
>gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete sequence Length = 135659 Score = 115 bits (58), Expect = 9e-23 Identities = 76/82 (92%) Strand = Plus / Plus Query: 179 ctgtgaggaaaatcattgagattaatccctacatgctgggaaccatggctggaggtgctg 238 |||||| |||||| ||||| |||||||| |||||||| ||||| |||||||||||||||| Sbjct: 68194 ctgtgaagaaaattattgaaattaatccgtacatgcttggaactatggctggaggtgctg 68253 Query: 239 ctgattgccaattttggcatag 260 |||||||||||||||||||||| Sbjct: 68254 ctgattgccaattttggcatag 68275
>gb|AY085678.1| Arabidopsis thaliana clone 16981 mRNA, complete sequence Length = 1105 Score = 95.6 bits (48), Expect = 8e-17 Identities = 135/164 (82%) Strand = Plus / Plus Query: 151 agcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaatccctac 210 |||||||| || || ||||| || ||| |||||| ||| || ||||| |||||||| || Sbjct: 341 agcatgggaggatatatctcgtcgcaatctgtgaagaagattattgaaattaatccttat 400 Query: 211 atgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaacttgggg 270 ||||| || || |||||||| |||||||||||||| ||||| ||||||||||| |||| Sbjct: 401 atgcttggtacaatggctggtggtgctgctgattgtcaattctggcatagaaatctggga 460 Query: 271 gtcaagtgccggctccatgagctcgcgaacaaacggaggatctc 314 | |||||||| || |||||||| || |||||| |||| ||||| Sbjct: 461 attaagtgccgtctacatgagctggcaaacaaaaggagaatctc 504
>gb|AY550121.1| Saussurea medusa 20S proteasome beta subunit E mRNA, partial cds Length = 498 Score = 91.7 bits (46), Expect = 1e-15 Identities = 103/122 (84%) Strand = Plus / Plus Query: 142 tcccgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagatt 201 ||||| || |||||||| ||||| ||||| || ||| |||||| ||| |||||||| ||| Sbjct: 267 tcccgagctagcatgggaggctatatctcatctcaatctgtgaagaagatcattgaaatt 326 Query: 202 aatccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcataga 261 |||||||| ||| |||| || ||||||||||| ||||| |||||||| || ||||| ||| Sbjct: 327 aatccctatatgttgggtacaatggctggaggagctgccgattgccagttctggcacaga 386 Query: 262 aa 263 || Sbjct: 387 aa 388
>ref|NM_113541.2| Arabidopsis thaliana endopeptidase/ threonine endopeptidase AT3G26340 mRNA, complete cds Length = 1108 Score = 87.7 bits (44), Expect = 2e-14 Identities = 134/164 (81%) Strand = Plus / Plus Query: 151 agcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaatccctac 210 |||||||| || || ||||| || ||| |||||| ||| || ||||| |||||||| || Sbjct: 340 agcatgggaggatatatctcgtcgcaatctgtgaagaagattattgaaattaatccttat 399 Query: 211 atgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaacttgggg 270 ||||| || || |||||||| |||||||||||||| ||||| ||||| ||||| |||| Sbjct: 400 atgcttggtacaatggctggtggtgctgctgattgtcaattctggcacagaaatctggga 459 Query: 271 gtcaagtgccggctccatgagctcgcgaacaaacggaggatctc 314 | |||||||| || |||||||| || |||||| |||| ||||| Sbjct: 460 attaagtgccgtctacatgagctggcaaacaaaaggagaatctc 503
>emb|AJ291741.1|NTA291741 Nicotiana tabacum partial mRNA for putative beta5 proteasome subunit (b5 gene) Length = 524 Score = 87.7 bits (44), Expect = 2e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 181 gtgaggaaaatcattgagattaatccctacatgctgggaaccatggctggaggtgctgct 240 |||| |||||||||||| || ||||| || ||||| ||||| |||||||| ||||||||| Sbjct: 34 gtgaagaaaatcattgaaataaatccgtatatgcttggaacaatggctgggggtgctgct 93 Query: 241 gattgccaattttggcatagaaac 264 || |||||||| |||||||||||| Sbjct: 94 gactgccaattctggcatagaaac 117
>gb|AY125569.1| Arabidopsis thaliana AT3g26340/F20C19_6 mRNA, complete cds Length = 822 Score = 87.7 bits (44), Expect = 2e-14 Identities = 134/164 (81%) Strand = Plus / Plus Query: 151 agcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaatccctac 210 |||||||| || || ||||| || ||| |||||| ||| || ||||| |||||||| || Sbjct: 232 agcatgggaggatatatctcgtcgcaatctgtgaagaagattattgaaattaatccttat 291 Query: 211 atgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaacttgggg 270 ||||| || || |||||||| |||||||||||||| ||||| ||||| ||||| |||| Sbjct: 292 atgcttggtacaatggctggtggtgctgctgattgtcaattctggcacagaaatctggga 351 Query: 271 gtcaagtgccggctccatgagctcgcgaacaaacggaggatctc 314 | |||||||| || |||||||| || |||||| |||| ||||| Sbjct: 352 attaagtgccgtctacatgagctggcaaacaaaaggagaatctc 395
>gb|AF439846.1|AF439846 Arabidopsis thaliana AT3g26340/F20C19_6 mRNA, complete cds Length = 1053 Score = 87.7 bits (44), Expect = 2e-14 Identities = 134/164 (81%) Strand = Plus / Plus Query: 151 agcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaatccctac 210 |||||||| || || ||||| || ||| |||||| ||| || ||||| |||||||| || Sbjct: 285 agcatgggaggatatatctcgtcgcaatctgtgaagaagattattgaaattaatccttat 344 Query: 211 atgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaacttgggg 270 ||||| || || |||||||| |||||||||||||| ||||| ||||| ||||| |||| Sbjct: 345 atgcttggtacaatggctggtggtgctgctgattgtcaattctggcacagaaatctggga 404 Query: 271 gtcaagtgccggctccatgagctcgcgaacaaacggaggatctc 314 | |||||||| || |||||||| || |||||| |||| ||||| Sbjct: 405 attaagtgccgtctacatgagctggcaaacaaaaggagaatctc 448
>ref|NM_101176.2| Arabidopsis thaliana PBE1; endopeptidase/ peptidase/ threonine endopeptidase AT1G13060 (PBE1) mRNA, complete cds Length = 1147 Score = 85.7 bits (43), Expect = 8e-14 Identities = 100/119 (84%) Strand = Plus / Plus Query: 145 cgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaat 204 ||||| |||||||| || || ||||| |||||| |||||| ||| || ||||| || ||| Sbjct: 337 cgggctagcatgggaggatatatctcctcacaatctgtgaagaagattattgaaatcaat 396 Query: 205 ccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaa 263 || || ||||| || || ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 397 ccttatatgctcggtacaatggctggaggagctgctgattgccaattctggcacagaaa 455
>gb|AY150473.1| Arabidopsis thaliana proteasome epsilon chain precursor (At1g13060) mRNA, complete cds Length = 856 Score = 85.7 bits (43), Expect = 8e-14 Identities = 100/119 (84%) Strand = Plus / Plus Query: 145 cgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaat 204 ||||| |||||||| || || ||||| |||||| |||||| ||| || ||||| || ||| Sbjct: 226 cgggctagcatgggaggatatatctcctcacaatctgtgaagaagattattgaaatcaat 285 Query: 205 ccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaa 263 || || ||||| || || ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 286 ccttatatgctcggtacaatggctggaggagctgctgattgccaattctggcacagaaa 344
>emb|Y13695.1|ATY13695 Arabidopsis thaliana mRNA for proteasome subunit prce Length = 1031 Score = 85.7 bits (43), Expect = 8e-14 Identities = 100/119 (84%) Strand = Plus / Plus Query: 145 cgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaat 204 ||||| |||||||| || || ||||| |||||| |||||| ||| || ||||| || ||| Sbjct: 252 cgggctagcatgggaggatatatctcctcacaatctgtgaagaagattattgaaatcaat 311 Query: 205 ccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaa 263 || || ||||| || || ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 312 ccttatatgctcggtacaatggctggaggagctgctgattgccaattctggcacagaaa 370
>gb|AY050871.1| Arabidopsis thaliana putative proteasome epsilon chain precursor (At1g13060) mRNA, complete cds Length = 1091 Score = 85.7 bits (43), Expect = 8e-14 Identities = 100/119 (84%) Strand = Plus / Plus Query: 145 cgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaat 204 ||||| |||||||| || || ||||| |||||| |||||| ||| || ||||| || ||| Sbjct: 319 cgggctagcatgggaggatatatctcctcacaatctgtgaagaagattattgaaatcaat 378 Query: 205 ccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaa 263 || || ||||| || || ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 379 ccttatatgctcggtacaatggctggaggagctgctgattgccaattctggcacagaaa 437
>gb|AF348579.1| Arabidopsis thaliana clone C00191 (e) putative proteasome epsilon chain precursor (At1g13060) mRNA, complete cds Length = 825 Score = 85.7 bits (43), Expect = 8e-14 Identities = 100/119 (84%) Strand = Plus / Plus Query: 145 cgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaat 204 ||||| |||||||| || || ||||| |||||| |||||| ||| || ||||| || ||| Sbjct: 226 cgggctagcatgggaggatatatctcctcacaatctgtgaagaagattattgaaatcaat 285 Query: 205 ccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaa 263 || || ||||| || || ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 286 ccttatatgctcggtacaatggctggaggagctgctgattgccaattctggcacagaaa 344
>emb|BX814144.1|CNS0AC2D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB59ZB11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 958 Score = 85.7 bits (43), Expect = 8e-14 Identities = 100/119 (84%) Strand = Plus / Plus Query: 145 cgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaat 204 ||||| |||||||| || || ||||| |||||| |||||| ||| || ||||| || ||| Sbjct: 238 cgggctagcatgggaggatatatctcctcacaatctgtgaagaagattattgaaatcaat 297 Query: 205 ccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaa 263 || || ||||| || || ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 298 ccttatatgctcggtacaatggctggaggagctgctgattgccaattctggcacagaaa 356
>emb|BX815505.1|CNS0ABBC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS68ZF03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1031 Score = 85.7 bits (43), Expect = 8e-14 Identities = 100/119 (84%) Strand = Plus / Plus Query: 145 cgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaat 204 ||||| |||||||| || || ||||| |||||| |||||| ||| || ||||| || ||| Sbjct: 319 cgggctagcatgggaggatatatctcctcacaatctgtgaagaagattattgaaatcaat 378 Query: 205 ccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaa 263 || || ||||| || || ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 379 ccttatatgctcggtacaatggctggaggagctgctgattgccaattctggcacagaaa 437
>emb|BX841869.1|CNS09Y42 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH46ZD01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1023 Score = 85.7 bits (43), Expect = 8e-14 Identities = 100/119 (84%) Strand = Plus / Plus Query: 145 cgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaat 204 ||||| |||||||| || || ||||| |||||| |||||| ||| || ||||| || ||| Sbjct: 264 cgggctagcatgggaggatatatctcctcacaatctgtgaagaagattattgaaatcaat 323 Query: 205 ccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaa 263 || || ||||| || || ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 324 ccttatatgctcggtacaatggctggaggagctgctgattgccaattctggcacagaaa 382
>gb|AY089104.1| Arabidopsis thaliana clone 33591 mRNA, complete sequence Length = 1090 Score = 85.7 bits (43), Expect = 8e-14 Identities = 100/119 (84%) Strand = Plus / Plus Query: 145 cgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaat 204 ||||| |||||||| || || ||||| |||||| |||||| ||| || ||||| || ||| Sbjct: 338 cgggctagcatgggaggatatatctcctcacaatctgtgaagaagattattgaaatcaat 397 Query: 205 ccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaa 263 || || ||||| || || ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 398 ccttatatgctcggtacaatggctggaggagctgctgattgccaattctggcacagaaa 456
>gb|AF043536.1|AF043536 Arabidopsis thaliana 20S proteasome beta subunit PBE1 (PBE1) mRNA, complete cds Length = 1031 Score = 85.7 bits (43), Expect = 8e-14 Identities = 100/119 (84%) Strand = Plus / Plus Query: 145 cgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaat 204 ||||| |||||||| || || ||||| |||||| |||||| ||| || ||||| || ||| Sbjct: 252 cgggctagcatgggaggatatatctcctcacaatctgtgaagaagattattgaaatcaat 311 Query: 205 ccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaa 263 || || ||||| || || ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 312 ccttatatgctcggtacaatggctggaggagctgctgattgccaattctggcacagaaa 370
>gb|AF323592.1|AF323592 Prunus persica putative 20S proteasome beta subunit 5 mRNA, partial cds Length = 817 Score = 81.8 bits (41), Expect = 1e-12 Identities = 116/141 (82%) Strand = Plus / Plus Query: 142 tcccgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagatt 201 ||||| || |||||||| || || || || |||||| ||||| |||||| ||||| || Sbjct: 6 tcccgagctagcatgggaggatatatatcctcacaatctgtggagaaaattattgaaatc 65 Query: 202 aatccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcataga 261 ||||| |||||||| || || ||||||||||| || ||||| ||||| |||||||||||| Sbjct: 66 aatccttacatgcttggtacaatggctggaggagccgctgactgccagttttggcataga 125 Query: 262 aacttgggggtcaagtgccgg 282 || ||||| | ||||||||| Sbjct: 126 aatctggggattaagtgccgg 146
>dbj|D78172.1| Spinacia oleracea mRNA for 26S proteasome beta subunit, complete cds Length = 1096 Score = 81.8 bits (41), Expect = 1e-12 Identities = 116/141 (82%) Strand = Plus / Plus Query: 142 tcccgggccagcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagatt 201 ||||| || |||||||| || || || || || ||| |||||| |||||| ||||| || Sbjct: 262 tcccgagctagcatgggaggatatatatcgtctcaatctgtgaagaaaattattgaaatc 321 Query: 202 aatccctacatgctgggaaccatggctggaggtgctgctgattgccaattttggcataga 261 ||||| || ||||| || ||||||||||| || |||||||| || || ||||||||| || Sbjct: 322 aatccttatatgcttggtaccatggctggtggggctgctgactgtcagttttggcatcga 381 Query: 262 aacttgggggtcaagtgccgg 282 |||||||| ||||||||||| Sbjct: 382 aacttgggcatcaagtgccgg 402
>gb|DQ450069.1| Arachis hypogaea clone 6A4R2G 20S proteasome beta subunit mRNA, partial cds Length = 802 Score = 73.8 bits (37), Expect = 3e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 151 agcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaatccctac 210 |||||||| || || || |||||||| |||| | ||| || ||||| |||||||| || Sbjct: 81 agcatgggaggatatatatcttcacagtctgtaaagaagattattgaaattaatccatat 140 Query: 211 atgctgggaaccatggctggaggtgctgctgattgccaattttggcatagaaa 263 ||||| ||||| ||||| |||||||| || ||||||||||||||||| ||||| Sbjct: 141 atgcttggaacaatggccggaggtgccgcggattgccaattttggcacagaaa 193
>gb|AC007357.2|F3F19 Arabidopsis thaliana chromosome 1 BAC F3F19 sequence, complete sequence Length = 99758 Score = 71.9 bits (36), Expect = 1e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 172 tcacaaactgtgaggaaaatcattgagattaatccctacatgctgggaaccatggctgga 231 |||||| |||||| ||| || ||||| || ||||| || ||||| || || ||||||||| Sbjct: 25971 tcacaatctgtgaagaagattattgaaatcaatccttatatgctcggtacaatggctgga 26030 Query: 232 ggtgctgctgattgccaattttggcatagaaa 263 || ||||||||||||||||| ||||| ||||| Sbjct: 26031 ggagctgctgattgccaattctggcacagaaa 26062
>gb|AY518886.1| Brassica napus putative proteasome 20S beta5 subunit mRNA, partial cds Length = 449 Score = 69.9 bits (35), Expect = 5e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 151 agcatgggcggctacatctcttcacaaactgtgaggaaaatcattgagattaatccctac 210 |||||||| || || ||||| |||||| |||||| ||| || |||||||| ||||| || Sbjct: 4 agcatgggaggatatatctcctcacaatctgtgaagaagattattgagatcaatccttat 63 Query: 211 atgctgggaaccatggctggaggtgctgctgattgccaattttggca 257 ||||| || || ||||||||||| |||||||| ||||||| ||||| Sbjct: 64 atgcttggtacaatggctggaggagctgctgaccgccaattctggca 110
>dbj|AP001298.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F20C19 Length = 71184 Score = 65.9 bits (33), Expect = 8e-08 Identities = 72/85 (84%) Strand = Plus / Minus Query: 179 ctgtgaggaaaatcattgagattaatccctacatgctgggaaccatggctggaggtgctg 238 |||||| ||| || ||||| |||||||| || ||||| || || |||||||| ||||||| Sbjct: 15780 ctgtgaagaagattattgaaattaatccttatatgcttggtacaatggctggtggtgctg 15721 Query: 239 ctgattgccaattttggcatagaaa 263 ||||||| ||||| ||||| ||||| Sbjct: 15720 ctgattgtcaattctggcacagaaa 15696
>dbj|AB246882.1| Lethenteron japonicum LMPX mRNA for low molecular mass polypeptide, partial cds Length = 983 Score = 61.9 bits (31), Expect = 1e-06 Identities = 97/119 (81%) Strand = Plus / Plus Query: 124 gtcatcgtcgccgacgactcccgggccagcatgggcggctacatctcttcacaaactgtg 183 |||||||| |||| |||||| || |||| | |||| ||||||| ||||||| |||||| Sbjct: 37 gtcatcgtggccgtcgactcgcgagccaccgcgggctcctacatcgcttcacagactgtg 96 Query: 184 aggaaaatcattgagattaatccctacatgctgggaaccatggctggaggtgctgctga 242 | ||| | |||||||||||||| ||| | |||| |||||||||||||| || ||||| Sbjct: 97 aagaaggtgattgagattaatccatacctcttgggcaccatggctggaggagcagctga 155
>dbj|D64055.1| Petromyzon marinus mRNA for LMPX of lamprey, partial cds Length = 1166 Score = 61.9 bits (31), Expect = 1e-06 Identities = 97/119 (81%) Strand = Plus / Plus Query: 124 gtcatcgtcgccgacgactcccgggccagcatgggcggctacatctcttcacaaactgtg 183 |||||||| |||| |||||| || |||| | |||| ||||||| ||||||| |||||| Sbjct: 245 gtcatcgtggccgtcgactcgcgagccaccgcgggctcctacatcgcttcacagactgtg 304 Query: 184 aggaaaatcattgagattaatccctacatgctgggaaccatggctggaggtgctgctga 242 | ||| | |||||||||||||| ||| | |||| |||||||||||||| || ||||| Sbjct: 305 aagaaggtgattgagattaatccatacctcttgggcaccatggctggaggagcagctga 363
>gb|AY623107.1| Pisum sativum 26S proteasome beta subunit mRNA, partial cds Length = 161 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 221 ccatggctggaggtgctgctgattgccaattttggcatagaaacttgggggtcaagtgcc 280 |||||||||| || |||||||| || || ||||||||| |||||||||| ||||||||| Sbjct: 2 ccatggctggtggggctgctgactgtcagttttggcatcgaaacttgggcatcaagtgcc 61 Query: 281 gg 282 || Sbjct: 62 gg 63
>emb|AJ011383.1|CAR011383 Cicer arietinum mRNA for 20S proteasome beta subunit Length = 1043 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 235 gctgctgattgccaattttggcatagaaa 263 ||||||||||||||||||||||||||||| Sbjct: 286 gctgctgattgccaattttggcatagaaa 314
>dbj|AK175091.1| Ciona intestinalis cDNA, clone:cixxx00142, full insert sequence Length = 1083 Score = 56.0 bits (28), Expect = 7e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 175 caaactgtgaggaaaatcattgagattaatccctacatgctgggaaccatggctggaggt 234 |||||||||| |||| | ||||| ||||| || || | || |||||||||||||| ||| Sbjct: 298 caaactgtgaagaaagtgattgaaattaacccgtatctcctcggaaccatggctggtggt 357 Query: 235 gctgctgattgc 246 |||||||||||| Sbjct: 358 gctgctgattgc 369
>dbj|AK175090.1| Ciona intestinalis cDNA, clone:cixxx00141, full insert sequence Length = 1083 Score = 56.0 bits (28), Expect = 7e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 175 caaactgtgaggaaaatcattgagattaatccctacatgctgggaaccatggctggaggt 234 |||||||||| |||| | ||||| ||||| || || | || |||||||||||||| ||| Sbjct: 298 caaactgtgaagaaagtgattgaaattaacccgtatctcctcggaaccatggctggtggt 357 Query: 235 gctgctgattgc 246 |||||||||||| Sbjct: 358 gctgctgattgc 369
>dbj|AK174277.1| Ciona intestinalis cDNA, clone:cicl019o10, full insert sequence Length = 1083 Score = 56.0 bits (28), Expect = 7e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 175 caaactgtgaggaaaatcattgagattaatccctacatgctgggaaccatggctggaggt 234 |||||||||| |||| | ||||| ||||| || || | || |||||||||||||| ||| Sbjct: 298 caaactgtgaagaaagtgattgaaattaacccgtatctcctcggaaccatggctggtggt 357 Query: 235 gctgctgattgc 246 |||||||||||| Sbjct: 358 gctgctgattgc 369
>ref|XM_709731.1| Candida albicans SC5314 hypothetical protein (CaO19.2233), mRNA Length = 858 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 223 atggctggaggtgctgctgattgccaattttgg 255 |||||||| |||||||||||||| ||||||||| Sbjct: 352 atggctggtggtgctgctgattgtcaattttgg 384
>ref|XM_709671.1| Candida albicans SC5314 hypothetical protein (CaO19.9775), mRNA Length = 858 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 223 atggctggaggtgctgctgattgccaattttgg 255 |||||||| |||||||||||||| ||||||||| Sbjct: 352 atggctggtggtgctgctgattgtcaattttgg 384
>ref|XM_387062.1| Gibberella zeae PH-1 chromosome 4 conserved hypothetical protein (FG06886.1) partial mRNA Length = 852 Score = 50.1 bits (25), Expect = 0.004 Identities = 34/37 (91%) Strand = Plus / Plus Query: 212 tgctgggaaccatggctggaggtgctgctgattgcca 248 ||||||||||||||||||| |||||||| || ||||| Sbjct: 326 tgctgggaaccatggctggtggtgctgcagactgcca 362
>emb|CR734153.2|CNS0GT94 Tetraodon nigroviridis full-length cDNA Length = 585 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Plus Query: 193 attgagattaatccctacatgctgggaaccatggctggagg 233 |||||||| || |||||| ||||||| |||||||||||||| Sbjct: 330 attgagatcaacccctacctgctgggcaccatggctggagg 370
>emb|CR733451.2|CNS0GSPM Tetraodon nigroviridis full-length cDNA Length = 1122 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Plus Query: 193 attgagattaatccctacatgctgggaaccatggctggagg 233 |||||||| || |||||| ||||||| |||||||||||||| Sbjct: 318 attgagatcaacccctacctgctgggcaccatggctggagg 358
>emb|CR727187.1|CNS0GO1L Tetraodon nigroviridis full-length cDNA Length = 1046 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Plus Query: 193 attgagattaatccctacatgctgggaaccatggctggagg 233 |||||||| || |||||| ||||||| |||||||||||||| Sbjct: 276 attgagatcaacccctacctgctgggcaccatggctggagg 316
>emb|CR726086.2|CNS0GN70 Tetraodon nigroviridis full-length cDNA Length = 1124 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Plus Query: 193 attgagattaatccctacatgctgggaaccatggctggagg 233 |||||||| || |||||| ||||||| |||||||||||||| Sbjct: 324 attgagatcaacccctacctgctgggcaccatggctggagg 364
>emb|CR724930.2|CNS0GMAW Tetraodon nigroviridis full-length cDNA Length = 1119 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Plus Query: 193 attgagattaatccctacatgctgggaaccatggctggagg 233 |||||||| || |||||| ||||||| |||||||||||||| Sbjct: 316 attgagatcaacccctacctgctgggcaccatggctggagg 356
>emb|CR718720.2|CNS0GHIE Tetraodon nigroviridis full-length cDNA Length = 1110 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Plus Query: 193 attgagattaatccctacatgctgggaaccatggctggagg 233 |||||||| || |||||| ||||||| |||||||||||||| Sbjct: 310 attgagatcaacccctacctgctgggcaccatggctggagg 350
>emb|CR687751.2|CNS0FTMB Tetraodon nigroviridis full-length cDNA Length = 1120 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Plus Query: 193 attgagattaatccctacatgctgggaaccatggctggagg 233 |||||||| || |||||| ||||||| |||||||||||||| Sbjct: 310 attgagatcaacccctacctgctgggcaccatggctggagg 350
>emb|CR663774.2|CNS0FB50 Tetraodon nigroviridis full-length cDNA Length = 1111 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Plus Query: 193 attgagattaatccctacatgctgggaaccatggctggagg 233 |||||||| || |||||| ||||||| |||||||||||||| Sbjct: 305 attgagatcaacccctacctgctgggcaccatggctggagg 345
>emb|CR659418.2|CNS0F7S0 Tetraodon nigroviridis full-length cDNA Length = 805 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Plus Query: 193 attgagattaatccctacatgctgggaaccatggctggagg 233 |||||||| || |||||| ||||||| |||||||||||||| Sbjct: 313 attgagatcaacccctacctgctgggcaccatggctggagg 353
>emb|CR657851.2|CNS0F6KH Tetraodon nigroviridis full-length cDNA Length = 1102 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Plus Query: 193 attgagattaatccctacatgctgggaaccatggctggagg 233 |||||||| || |||||| ||||||| |||||||||||||| Sbjct: 311 attgagatcaacccctacctgctgggcaccatggctggagg 351
>ref|XM_455453.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F08228g predicted mRNA Length = 858 Score = 48.1 bits (24), Expect = 0.018 Identities = 33/36 (91%) Strand = Plus / Plus Query: 220 accatggctggaggtgctgctgattgccaattttgg 255 |||||||| || |||||||||||||| ||||||||| Sbjct: 346 accatggccggtggtgctgctgattgtcaattttgg 381
>ref|XM_745627.1| Aspergillus fumigatus Af293 proteasome component Pre2 (Afu6g08310) partial mRNA Length = 891 Score = 48.1 bits (24), Expect = 0.018 Identities = 33/36 (91%) Strand = Plus / Plus Query: 215 tgggaaccatggctggaggtgctgctgattgccaat 250 |||| ||||||||||| |||||||| |||||||||| Sbjct: 371 tgggtaccatggctggtggtgctgcggattgccaat 406
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 48.1 bits (24), Expect = 0.018 Identities = 33/36 (91%) Strand = Plus / Minus Query: 220 accatggctggaggtgctgctgattgccaattttgg 255 |||||||| || |||||||||||||| ||||||||| Sbjct: 771090 accatggccggtggtgctgctgattgtcaattttgg 771055
>ref|XM_537370.2| PREDICTED: Canis familiaris similar to proteasome beta 5 subunit (LOC480246), mRNA Length = 1081 Score = 46.1 bits (23), Expect = 0.070 Identities = 32/35 (91%) Strand = Plus / Plus Query: 196 gagattaatccctacatgctgggaaccatggctgg 230 ||||| ||||||||| ||||||| ||||||||||| Sbjct: 358 gagatcaatccctacctgctgggcaccatggctgg 392
>ref|NM_001037612.1| Bos taurus proteasome (prosome, macropain) subunit, beta type, 5 (PSMB5), mRNA Length = 1385 Score = 46.1 bits (23), Expect = 0.070 Identities = 44/51 (86%) Strand = Plus / Plus Query: 196 gagattaatccctacatgctgggaaccatggctggaggtgctgctgattgc 246 ||||| || |||||| ||||||| ||||||||||| ||||| || |||||| Sbjct: 637 gagatcaacccctacctgctgggcaccatggctgggggtgcagcggattgc 687
>gb|BC110039.1| Bos taurus cDNA clone MGC:134464 IMAGE:8048388, complete cds Length = 1385 Score = 46.1 bits (23), Expect = 0.070 Identities = 44/51 (86%) Strand = Plus / Plus Query: 196 gagattaatccctacatgctgggaaccatggctggaggtgctgctgattgc 246 ||||| || |||||| ||||||| ||||||||||| ||||| || |||||| Sbjct: 637 gagatcaacccctacctgctgggcaccatggctgggggtgcagcggattgc 687
>gb|AY726003.1| Marmota monax low molecular mass protein 7 mRNA, partial cds Length = 471 Score = 44.1 bits (22), Expect = 0.28 Identities = 34/38 (89%) Strand = Plus / Plus Query: 193 attgagattaatccctacatgctgggaaccatggctgg 230 |||||||||||||||||| |||| || |||||| |||| Sbjct: 71 attgagattaatccctacctgcttggcaccatgtctgg 108
>ref|XM_500920.1| Yarrowia lipolytica CLIB122, YALI0B15224g predicted mRNA Length = 861 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 212 tgctgggaaccatggctggagg 233 |||||||||||||||||||||| Sbjct: 326 tgctgggaaccatggctggagg 347
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 212 tgctgggaaccatggctggagg 233 |||||||||||||||||||||| Sbjct: 2028054 tgctgggaaccatggctggagg 2028075
>gb|AC160552.13| Mus musculus chromosome 3, clone RP23-326D6, complete sequence Length = 210051 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 gctctccttcatcttcgacaagggc 123 |||||||||||||||| |||||||| Sbjct: 171205 gctctccttcatcttctacaagggc 171181
>emb|AL354995.13| Human DNA sequence from clone RP11-512J14 on chromosome 13 Contains the 3' end of the DACH gene for dachshund homolog (Drosophila) (DACH1, FLJ10138), complete sequence Length = 149582 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 caaactgtgaggaaaatcatt 195 ||||||||||||||||||||| Sbjct: 35924 caaactgtgaggaaaatcatt 35944
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 ggcgtcatcgtcgccgacgac 141 ||||||||||||||||||||| Sbjct: 1728069 ggcgtcatcgtcgccgacgac 1728049
>gb|DQ214027.1| Taeniopygia guttata clone 0058P0034B02 ankyrin-like protein variant 2-like mRNA, complete sequence Length = 1038 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ggccagcatgggcggctaca 166 |||||||||||||||||||| Sbjct: 578 ggccagcatgggcggctaca 597
>gb|DQ214026.1| Taeniopygia guttata clone 0058P0001C03 ankyrin-like protein variant 2-like mRNA, complete sequence Length = 1038 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ggccagcatgggcggctaca 166 |||||||||||||||||||| Sbjct: 578 ggccagcatgggcggctaca 597
>gb|DQ214025.1| Taeniopygia guttata clone 0058P0045H05 ankyrin-like protein variant 1-like mRNA, complete sequence Length = 1085 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ggccagcatgggcggctaca 166 |||||||||||||||||||| Sbjct: 614 ggccagcatgggcggctaca 633
>gb|DQ214024.1| Taeniopygia guttata clone 0058P0016G03 ankyrin-like protein variant 1-like mRNA, complete sequence Length = 1085 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ggccagcatgggcggctaca 166 |||||||||||||||||||| Sbjct: 614 ggccagcatgggcggctaca 633
>gb|DQ214023.1| Taeniopygia guttata clone 0058P0052B06 ankyrin-like protein variant 1-like mRNA, complete sequence Length = 1085 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ggccagcatgggcggctaca 166 |||||||||||||||||||| Sbjct: 614 ggccagcatgggcggctaca 633
>ref|XM_859995.1| PREDICTED: Canis familiaris similar to regulatory factor X-associated ankyrin-containing protein isoform b, transcript variant 6 (LOC476662), mRNA Length = 1020 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ggccagcatgggcggctaca 166 |||||||||||||||||||| Sbjct: 570 ggccagcatgggcggctaca 589
>ref|XM_859974.1| PREDICTED: Canis familiaris similar to regulatory factor X-associated ankyrin-containing protein isoform b, transcript variant 5 (LOC476662), mRNA Length = 975 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ggccagcatgggcggctaca 166 |||||||||||||||||||| Sbjct: 525 ggccagcatgggcggctaca 544
>ref|XM_859956.1| PREDICTED: Canis familiaris similar to regulatory factor X-associated ankyrin-containing protein isoform b, transcript variant 4 (LOC476662), mRNA Length = 870 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ggccagcatgggcggctaca 166 |||||||||||||||||||| Sbjct: 420 ggccagcatgggcggctaca 439
>ref|XM_533866.2| PREDICTED: Canis familiaris similar to regulatory factor X-associated ankyrin-containing protein isoform b, transcript variant 1 (LOC476662), mRNA Length = 939 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ggccagcatgggcggctaca 166 |||||||||||||||||||| Sbjct: 489 ggccagcatgggcggctaca 508
>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of 11 of the complete sequence Length = 613322 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 tgtgaggaaaatcattgagattaa 203 |||||||||||||||||| ||||| Sbjct: 309395 tgtgaggaaaatcattgaaattaa 309372
>ref|XM_763241.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_675_28554_23026) partial mRNA Length = 5529 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gagttccccacctgcaacga 38 |||||||||||||||||||| Sbjct: 2688 gagttccccacctgcaacga 2669
>emb|AL354763.17| Human DNA sequence from clone RP11-357L1 on chromosome 13 Contains an ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G variant 1 (ATP6V1G1) pseudogene, complete sequence Length = 192963 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 tgtgaggaaaatcattgagattaa 203 |||||||||||||||||| ||||| Sbjct: 35681 tgtgaggaaaatcattgaaattaa 35658
>emb|AL139122.12| Human DNA sequence from clone RP11-360L4 on chromosome 10, complete sequence Length = 94759 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 cacaaactgtgaggaaaatcattg 196 ||||||||| |||||||||||||| Sbjct: 80795 cacaaactgggaggaaaatcattg 80818
>emb|BX936318.10| Zebrafish DNA sequence from clone CH211-229O17 in linkage group 13, complete sequence Length = 158912 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cttcacaaactgtgaggaaa 189 |||||||||||||||||||| Sbjct: 13771 cttcacaaactgtgaggaaa 13790
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 accaaggagatggtcaacaa 80 |||||||||||||||||||| Sbjct: 618631 accaaggagatggtcaacaa 618650
>gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold Length = 288075 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 cttcacaaactgtgaggaaa 189 |||||||||||||||||||| Sbjct: 105057 cttcacaaactgtgaggaaa 105038
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 ggcgtcatcgtcgccgacga 140 |||||||||||||||||||| Sbjct: 1524878 ggcgtcatcgtcgccgacga 1524897
>dbj|AB033150.1| Xenopus ruwenzoriensis mRNA for proteasome subunit LMP7B, partial cds Length = 261 Score = 40.1 bits (20), Expect = 4.3 Identities = 47/56 (83%) Strand = Plus / Plus Query: 193 attgagattaatccctacatgctgggaaccatggctggaggtgctgctgattgcca 248 |||||||||||||| || | ||||||||||| ||||| ||||||| || ||||| Sbjct: 67 attgagattaatccttatcttttgggaaccatgtctggaagtgctgcagactgcca 122
>dbj|AB033149.1| Xenopus ruwenzoriensis mRNA for proteasome subunit LMP7B, partial cds Length = 261 Score = 40.1 bits (20), Expect = 4.3 Identities = 47/56 (83%) Strand = Plus / Plus Query: 193 attgagattaatccctacatgctgggaaccatggctggaggtgctgctgattgcca 248 |||||||||||||| || | ||||||||||| ||||| ||||||| || ||||| Sbjct: 67 attgagattaatccttatcttttgggaaccatgtctggaagtgctgcagactgcca 122 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,570,830 Number of Sequences: 3902068 Number of extensions: 2570830 Number of successful extensions: 75356 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 75062 Number of HSP's gapped (non-prelim): 292 length of query: 326 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 304 effective length of database: 17,147,199,772 effective search space: 5212748730688 effective search space used: 5212748730688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)