>ref|XM_550578.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 882

 Score =  145 bits (73), Expect = 2e-31
 Identities = 159/187 (85%), Gaps = 3/187 (1%)
 Strand = Plus / Plus

                                                                       
Query: 179 gcagcccctcaagcgcccccgccccggcgactactccgccgatggacctggtgctcctga 238
           |||||| |||||||| |||||||||| ||||| |||||   ||| |||||||||||||||
Sbjct: 141 gcagccgctcaagcggccccgccccgccgacttctccg---atgtacctggtgctcctga 197

                                                                       
Query: 239 gatggcgggctattaccctcgtgatgaagaaaggccaggatatgctgccgtgagagatac 298
            ||||| ||||||||| |||||||||||||||||||||| |||  | | |  ||||| ||
Sbjct: 198 aatggctggctattactctcgtgatgaagaaaggccagggtatcgtcctgcaagagacac 257

                                                                       
Query: 299 acaggctcttaatgcttcatatgagcgttttctacgtactgggcaaattcagtcctatgg 358
             |||||||||| ||||| ||||| |||||||| || |||||||||||||| ||||||||
Sbjct: 258 tgaggctcttaacgcttcctatgaacgttttctgcgcactgggcaaattcaatcctatgg 317

                  
Query: 359 cgctgga 365
            ||||||
Sbjct: 318 agctgga 324



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 469 ttggttttggtggtggaatgccagagcctccccttcccccagat 512
           |||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 437 ttggctttggtggtgggatgccagagcctccccttccaccagat 480



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 54 atggccgacgcgtactggcggtacgccg 81
          |||||||||||||||||| |||||||||
Sbjct: 1  atggccgacgcgtactggaggtacgccg 28

>gb|AY105296.1| Zea mays PCO103628 mRNA sequence
          Length = 945

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 228/287 (79%), Gaps = 3/287 (1%)
 Strand = Plus / Plus

                                                                       
Query: 219 gatggacctggtgctcctgagatggcgggctattaccctcgtgatgaagaaaggccagga 278
           |||| ||| ||||| ||||| | ||| |||||||| || || |||||||||||| |||| 
Sbjct: 364 gatgtacccggtgcacctgacacggctggctattatccacgcgatgaagaaagggcaggg 423

                                                                       
Query: 279 tatgctgccgtgagagatacacaggctcttaatgcttcatatgagcgttttctacgtact 338
           |||  ||| |  ||||||||  || ||||||| || || || || |||||||||||||||
Sbjct: 424 tatcgtgctgctagagataccgagtctcttaacgcgtcctacgaacgttttctacgtact 483

                                                                       
Query: 339 gggcaaattcagtcctatggcgctggacctgctggtggatctgttaggcctgccgcggga 398
           ||||||||||| |||| ||| | ||||| |||||| | | || |||||||||| | ||| 
Sbjct: 484 gggcaaattcaatcctttggtggtggacatgctggagaacctattaggcctgctgtgggt 543

                                                                       
Query: 399 gtcagtgctggcggctaccaagctgatgaccgcccggggatggctgctgggggtatgaat 458
           | || ||||   | ||||| || |||||| ||  |   |||||||||| |||||||| ||
Sbjct: 544 ggcaatgct---gcctacccagttgatgatcgttcaatgatggctgctaggggtatggat 600

                                                          
Query: 459 ggtaggaatgttggttttggtggtggaatgccagagcctccccttcc 505
            | || ||| ||||||| | |||||||||||||||||| ||||||||
Sbjct: 601 agcagaaatattggtttcgttggtggaatgccagagccaccccttcc 647



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 54  atggccgacgcgtactggcggtacgc 79
           |||||||||||||||||| |||||||
Sbjct: 186 atggccgacgcgtactggaggtacgc 211

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 104/123 (84%)
 Strand = Plus / Plus

                                                                           
Query: 219     gatggacctggtgctcctgagatggcgggctattaccctcgtgatgaagaaaggccagga 278
               |||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| 
Sbjct: 1455298 gatgtacctggtgctcctgaaatggctggctattactctcgtgatgaagaaaggccaggg 1455357

                                                                           
Query: 279     tatgctgccgtgagagatacacaggctcttaatgcttcatatgagcgttttctacgtact 338
               |||  | | |  ||||| ||  |||||||||| ||||| ||||| |||||||| || |||
Sbjct: 1455358 tatcgtcctgcaagagacactgaggctcttaacgcttcctatgaacgttttctgcgcact 1455417

                  
Query: 339     ggg 341
               |||
Sbjct: 1455418 ggg 1455420



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                           
Query: 469     ttggttttggtggtggaatgccagagcctccccttcccccagat 512
               |||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 1455644 ttggctttggtggtgggatgccagagcctccccttccaccagat 1455687



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                              
Query: 51      gccatggccgacgcgtactggcggtacgccg 81
               ||||||||||||||||||||| |||||||||
Sbjct: 1454530 gccatggccgacgcgtactggaggtacgccg 1454560

>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0038F22
          Length = 101666

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 104/123 (84%)
 Strand = Plus / Plus

                                                                         
Query: 219   gatggacctggtgctcctgagatggcgggctattaccctcgtgatgaagaaaggccagga 278
             |||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| 
Sbjct: 62584 gatgtacctggtgctcctgaaatggctggctattactctcgtgatgaagaaaggccaggg 62643

                                                                         
Query: 279   tatgctgccgtgagagatacacaggctcttaatgcttcatatgagcgttttctacgtact 338
             |||  | | |  ||||| ||  |||||||||| ||||| ||||| |||||||| || |||
Sbjct: 62644 tatcgtcctgcaagagacactgaggctcttaacgcttcctatgaacgttttctgcgcact 62703

                
Query: 339   ggg 341
             |||
Sbjct: 62704 ggg 62706



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 469   ttggttttggtggtggaatgccagagcctccccttcccccagat 512
             |||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 62930 ttggctttggtggtgggatgccagagcctccccttccaccagat 62973



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                            
Query: 51    gccatggccgacgcgtactggcggtacgccg 81
             ||||||||||||||||||||| |||||||||
Sbjct: 61816 gccatggccgacgcgtactggaggtacgccg 61846

>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0425F02
          Length = 176979

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 104/123 (84%)
 Strand = Plus / Plus

                                                                          
Query: 219    gatggacctggtgctcctgagatggcgggctattaccctcgtgatgaagaaaggccagga 278
              |||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| 
Sbjct: 163837 gatgtacctggtgctcctgaaatggctggctattactctcgtgatgaagaaaggccaggg 163896

                                                                          
Query: 279    tatgctgccgtgagagatacacaggctcttaatgcttcatatgagcgttttctacgtact 338
              |||  | | |  ||||| ||  |||||||||| ||||| ||||| |||||||| || |||
Sbjct: 163897 tatcgtcctgcaagagacactgaggctcttaacgcttcctatgaacgttttctgcgcact 163956

                 
Query: 339    ggg 341
              |||
Sbjct: 163957 ggg 163959



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                          
Query: 469    ttggttttggtggtggaatgccagagcctccccttcccccagat 512
              |||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 164183 ttggctttggtggtgggatgccagagcctccccttccaccagat 164226



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                             
Query: 51     gccatggccgacgcgtactggcggtacgccg 81
              ||||||||||||||||||||| |||||||||
Sbjct: 163069 gccatggccgacgcgtactggaggtacgccg 163099

>ref|XM_693546.1| PREDICTED: Danio rerio similar to 65 kDa Yes-associated protein
           (YAP65) (LOC570109), mRNA
          Length = 2809

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 396 ggagtcagtgctggcggctaccaag 420
           ||||||||||||||| |||||||||
Sbjct: 549 ggagtcagtgctggcagctaccaag 573

>ref|XM_684817.1| PREDICTED: Danio rerio similar to 65 kDa Yes-associated protein
            (YAP65) (LOC561411), mRNA
          Length = 3814

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 396  ggagtcagtgctggcggctaccaag 420
            ||||||||||||||| |||||||||
Sbjct: 1554 ggagtcagtgctggcagctaccaag 1578

>dbj|D78344.1| Mus musculus DNA, gamma gene loci of immunoglobulin heavy chains
          Length = 59641

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 452   tatgaatggtaggaatgttgg 472
             |||||||||||||||||||||
Sbjct: 28836 tatgaatggtaggaatgttgg 28856

>emb|AL954841.10| Zebrafish DNA sequence from clone DKEY-3B8, complete sequence
          Length = 149277

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 396   ggagtcagtgctggcggctaccaag 420
             ||||||||||||||| |||||||||
Sbjct: 36636 ggagtcagtgctggcagctaccaag 36612

>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial
               variable region, strain 129/Sv
          Length = 1382053

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 452     tatgaatggtaggaatgttgg 472
               |||||||||||||||||||||
Sbjct: 1327501 tatgaatggtaggaatgttgg 1327521

>gb|U60446.1|MMU60446 Mus musculus flanking sequences around chromosome 12 breakpoint in
           primary plasmacytoma 4132
          Length = 240

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 452 tatgaatggtaggaatgttgg 472
           |||||||||||||||||||||
Sbjct: 102 tatgaatggtaggaatgttgg 82

>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete
              sequence
          Length = 1085720

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    ggcgctggacctgctggtgg 376
              ||||||||||||||||||||
Sbjct: 323067 ggcgctggacctgctggtgg 323048

>gb|BT014122.1| Lycopersicon esculentum clone 133228R, mRNA sequence
          Length = 1644

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 41 gccggcggcagccatggccg 60
          ||||||||||||||||||||
Sbjct: 38 gccggcggcagccatggccg 19

>ref|XM_567493.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNJ01150) partial mRNA
          Length = 2381

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  ggcgctggacctgctggtgg 376
            ||||||||||||||||||||
Sbjct: 2217 ggcgctggacctgctggtgg 2236

>gb|AC124691.4| Mus musculus BAC clone RP24-158O8 from chromosome 15, complete sequence
          Length = 176829

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 493    agcctccccttcccccagat 512
              ||||||||||||||||||||
Sbjct: 118625 agcctccccttcccccagat 118606

>gb|J00456.1|MUSIGCD23 Mouse germline IgG-2B gene, switch region, part a
          Length = 262

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 452 tatgaatggtaggaatgttg 471
           ||||||||||||||||||||
Sbjct: 243 tatgaatggtaggaatgttg 262

>emb|AL590683.16| Human DNA sequence from clone RP11-10N16 on chromosome 1 Contains the 5'
              end of the IL22RA1 gene for interleukin 22 receptor alpha
              1, the IL28RA gene for interleukin 28 receptor alpha
              (interferon, lambda receptor), a novel gene and the 3' end
              of a novel gene, complete sequence
          Length = 164684

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 489    ccagagcctccccttcccccagat 512
              |||||||| |||||||||||||||
Sbjct: 138952 ccagagccaccccttcccccagat 138975

>emb|AL133413.5| Human DNA sequence from clone RP11-54K22 on chromosome 9q34.11-34.2
              Contains a NADH dehydrogenase 3, mitochondrial (MTND3)
              pseudogene, complete sequence
          Length = 157790

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 493    agcctccccttcccccagat 512
              ||||||||||||||||||||
Sbjct: 117564 agcctccccttcccccagat 117583

>gb|AC008544.7| Homo sapiens chromosome 5 clone CTC-500G13, complete sequence
          Length = 168008

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 436    ggatggctgctgggggtatg 455
              ||||||||||||||||||||
Sbjct: 139422 ggatggctgctgggggtatg 139441

>dbj|AB168926.1| Macaca fascicularis testis cDNA, clone: QtsA-15848, similar to
          human testis and spermatogenesis cell related protein
          2(TSARG2), mRNA, RefSeq: NM_144644.2
          Length = 1107

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 39 cggccggcggcagccatggc 58
          ||||||||||||||||||||
Sbjct: 32 cggccggcggcagccatggc 13

>gb|AC021066.37| Homo sapiens 12 BAC RP11-845M18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 158285

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 488    gccagagcctccccttcccc 507
              ||||||||||||||||||||
Sbjct: 130708 gccagagcctccccttcccc 130727

>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     cgtactggcggtacgccgac 83
              ||||||||||||||||||||
Sbjct: 659285 cgtactggcggtacgccgac 659266

>emb|BX465837.11| Zebrafish DNA sequence from clone DKEY-27C15 in linkage group 19,
              complete sequence
          Length = 206154

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    ctcttaatgcttcatatgag 323
              ||||||||||||||||||||
Sbjct: 158453 ctcttaatgcttcatatgag 158472

>ref|NM_001008990.1| Pan troglodytes spermatogenesis associated 4 (SPATA4), mRNA
          Length = 1169

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  cggccggcggcagccatggc 58
           ||||||||||||||||||||
Sbjct: 126 cggccggcggcagccatggc 107

>gb|AY660661.1| Pan troglodytes spermatogenesis-associated 4 (SPATA4) mRNA,
           complete cds
          Length = 1169

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  cggccggcggcagccatggc 58
           ||||||||||||||||||||
Sbjct: 126 cggccggcggcagccatggc 107


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,485,600
Number of Sequences: 3902068
Number of extensions: 3485600
Number of successful extensions: 92971
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92862
Number of HSP's gapped (non-prelim): 109
length of query: 512
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 489
effective length of database: 17,143,297,704
effective search space: 8383072577256
effective search space used: 8383072577256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)