ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart36f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YQJG_ECOLI (P42620) Hypothetical protein yqjG 81 2e-15
2ECM4_YEAST (P36156) Extracellular matrix protein 4 57 4e-08
3YM85_YEAST (Q04806) Hypothetical 42.4 kDa protein in FAA4-HOR7 i... 47 2e-05
4IN21_MAIZE (P49248) IN2-1 protein 33 0.47
5YK67_CAEEL (P34345) Hypothetical protein C29E4.7 in chromosome III 33 0.61
6GSTO1_RAT (Q9Z339) Glutathione transferase omega-1 (EC 2.5.1.18)... 31 2.3
7GSTO1_MOUSE (O09131) Glutathione transferase omega-1 (EC 2.5.1.1... 30 3.0
8GLRX2_SYNY3 (P73492) Probable glutaredoxin ssr2061 29 8.9

>YQJG_ECOLI (P42620) Hypothetical protein yqjG|
          Length = 328

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 53/132 (40%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
 Frame = +1

Query: 142 DEVTDTGAFDRTPSTFRSFVSSDGA------ARFPAVAGRYHLYVSYACPWASRCLAYLK 303
           D  +  G F R+ S FR+++++DGA        F A   RYHLYVS ACPWA R L   K
Sbjct: 15  DTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRK 74

Query: 304 LKGLDHAISFSSVKPIFERTRESDDHLGWVFPAAAGEVPGADPDPFNGARSVRDLYEIAS 483
           LKGL+  IS S V P+           GW F       PGA  D       +  LY  A 
Sbjct: 75  LKGLEPFISVSVVNPLMLEN-------GWTFD---DSFPGATGDTLYQNEFLYQLYLHAD 124

Query: 484 KNYTGKPTVPVL 519
            +Y+G+ TVPVL
Sbjct: 125 PHYSGRVTVPVL 136



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>ECM4_YEAST (P36156) Extracellular matrix protein 4|
          Length = 370

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 49/152 (32%), Positives = 63/152 (41%), Gaps = 32/152 (21%)
 Frame = +1

Query: 160 GAFDRTPSTFRSFVSSDGAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAISFSS 339
           GAF R  S+FR  +S       PA  GRY LYVS ACPWA R L    LKGL   I  S 
Sbjct: 11  GAFKRQVSSFRETISKQHPIYKPA-KGRYWLYVSLACPWAHRTLITRALKGLTSVIGCSV 69

Query: 340 VK-----------PIFERTRESDDHLGWVFPAAAG-------------EVPG-------- 423
           V             + ++  +S+D L      A G             E+          
Sbjct: 70  VHWHLDEKGWRFLDMEKQLEDSEDFLEHWHDVAGGIRTAKEDSSKSFAEIKNDSQRFMVD 129

Query: 424 ADPDPFNGARSVRDLYEIASKNYTGKPTVPVL 519
           A  +P  G + + DLY  +   Y+ + TVPVL
Sbjct: 130 ATNEPHYGYKRISDLYYKSDPQYSARFTVPVL 161



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>YM85_YEAST (Q04806) Hypothetical 42.4 kDa protein in FAA4-HOR7 intergenic|
           region
          Length = 366

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 46/148 (31%), Positives = 55/148 (37%), Gaps = 30/148 (20%)
 Frame = +1

Query: 166 FDRTPSTFRSFVSSDGAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAISFSSVK 345
           F R  S FR  +S+D     PA  GRY LYV+  CPWA R L    LKGL   I  S   
Sbjct: 13  FKRQSSPFREIISADHPIYKPA-KGRYWLYVALPCPWAQRTLITRALKGLAPIIGCSVAH 71

Query: 346 --------PIFERTRESDDHLGWVFPAAAG----------------------EVPGADPD 435
                      E      +   W F  A G                       V G D +
Sbjct: 72  WHLDDKGWRFLEEGDGKTNERHW-FDIAGGISSVNLNTSTPVANIPNNAHRLLVDGTD-E 129

Query: 436 PFNGARSVRDLYEIASKNYTGKPTVPVL 519
           P  G + + D Y     +Y G+ TVPVL
Sbjct: 130 PHYGYKRLSDFYFKTKPDYKGRFTVPVL 157



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>IN21_MAIZE (P49248) IN2-1 protein|
          Length = 243

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
 Frame = +1

Query: 226 PAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAISFSSVKPIFERTRESDDHLGWVFPA- 402
           P   G   LY+ Y CP+A R      LKGL   +   ++        +  D   W     
Sbjct: 27  PVFDGTTRLYICYFCPFAQRAWVTRNLKGLQDKMELVAI--------DLQDKPAWYKDKV 78

Query: 403 -AAGEVPGADPDPFNGARSVRDLYEIASKNYTGKPTVP 513
            A G VP  + D      S+ DL      N+ G   +P
Sbjct: 79  YAQGTVPSLEHDSEVRGESL-DLIRYIDSNFDGPALLP 115



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>YK67_CAEEL (P34345) Hypothetical protein C29E4.7 in chromosome III|
          Length = 250

 Score = 32.7 bits (73), Expect = 0.61
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 211 GAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLD 318
           G A  P   G + +Y    CPWA R + Y+  KG++
Sbjct: 14  GDAEPPLSKGSFRVYNMRFCPWAERAMLYVAAKGIE 49



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>GSTO1_RAT (Q9Z339) Glutathione transferase omega-1 (EC 2.5.1.18) (GSTO 1-1)|
           (Glutathione-dependent dehydroascorbate reductase)
          Length = 241

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 226 PAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAI 327
           P   G+  +Y    CP+A R L  LK KG+ H I
Sbjct: 18  PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEI 51



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>GSTO1_MOUSE (O09131) Glutathione transferase omega-1 (EC 2.5.1.18) (GSTO 1-1)|
           (p28)
          Length = 240

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 226 PAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAI 327
           P   G+  +Y    CP+A R L  LK KG+ H +
Sbjct: 18  PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEV 51



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>GLRX2_SYNY3 (P73492) Probable glutaredoxin ssr2061|
          Length = 88

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 229 AVAGRYHLYVSYACPWASRCLAYLKLKGLD 318
           AV+ +  +Y    CP+  R LA LK KG++
Sbjct: 2   AVSAKIEIYTWSTCPFCMRALALLKRKGVE 31


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,597,692
Number of Sequences: 219361
Number of extensions: 596364
Number of successful extensions: 2493
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2491
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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