ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart36f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SDF2_ARATH (Q93ZE8) Stromal cell-derived factor 2-like protein p... 66 5e-11
2SDF2_MOUSE (Q9DCT5) Stromal cell-derived factor 2 precursor (SDF-2) 42 0.001
3SDF2L_MOUSE (Q9ESP1) Stromal cell-derived factor 2-like protein ... 42 0.001
4SDF2L_HUMAN (Q9HCN8) Stromal cell-derived factor 2-like protein ... 40 0.004
5SDF2_HUMAN (Q99470) Stromal cell-derived factor 2 precursor (SDF-2) 39 0.007
6PMT6_YEAST (P42934) Dolichyl-phosphate-mannose--protein mannosyl... 30 5.3

>SDF2_ARATH (Q93ZE8) Stromal cell-derived factor 2-like protein precursor|
           (SDF2-like protein)
          Length = 218

 Score = 66.2 bits (160), Expect = 5e-11
 Identities = 32/42 (76%), Positives = 34/42 (80%)
 Frame = +2

Query: 401 SQSYAADLDTAVEISYGSVIKLMHERTKFRLHSHDVPYGSGS 526
           S S AA     VEI+YGS IKLMHE+TKFRLHSHDVPYGSGS
Sbjct: 24  SASAAASGKEGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGS 65



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>SDF2_MOUSE (Q9DCT5) Stromal cell-derived factor 2 precursor (SDF-2)|
          Length = 211

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = +2

Query: 440 ISYGSVIKLMHERTKFRLHSHDVPYGSGS 526
           ++ GSV+KL++ R   RLHSHDV YGSGS
Sbjct: 24  VTCGSVVKLLNTRHNVRLHSHDVRYGSGS 52



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>SDF2L_MOUSE (Q9ESP1) Stromal cell-derived factor 2-like protein 1 precursor|
           (SDF2-like protein 1)
          Length = 221

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 20/41 (48%), Positives = 28/41 (68%)
 Frame = +2

Query: 404 QSYAADLDTAVEISYGSVIKLMHERTKFRLHSHDVPYGSGS 526
           +S  A   +A  ++ GSV+KL++   K RLHSHD+ YGSGS
Sbjct: 24  RSGGASKASAGLVTCGSVLKLLNTHHKVRLHSHDIKYGSGS 64



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>SDF2L_HUMAN (Q9HCN8) Stromal cell-derived factor 2-like protein 1 precursor|
           (SDF2-like protein 1) (PWP1-interacting protein 8)
          Length = 221

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 440 ISYGSVIKLMHERTKFRLHSHDVPYGSGS 526
           ++ GSV+KL++   + RLHSHD+ YGSGS
Sbjct: 36  VTCGSVLKLLNTHHRVRLHSHDIKYGSGS 64



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>SDF2_HUMAN (Q99470) Stromal cell-derived factor 2 precursor (SDF-2)|
          Length = 211

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +2

Query: 440 ISYGSVIKLMHERTKFRLHSHDVPYGSGS 526
           ++ GSV+KL++ R   RLHSHDV YGS S
Sbjct: 24  VTCGSVVKLLNTRHNVRLHSHDVRYGSSS 52



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>PMT6_YEAST (P42934) Dolichyl-phosphate-mannose--protein mannosyltransferase 6|
           (EC 2.4.1.109)
          Length = 759

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 434 VEISYGSVIKLMHERTKFRLHSHDVP 511
           + I+ G  ++L H+ T   LHSHDVP
Sbjct: 412 IPITDGVEVRLSHKNTGSNLHSHDVP 437


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,576,613
Number of Sequences: 219361
Number of extensions: 548654
Number of successful extensions: 1267
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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