ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart36f02 |
|---|---|
| Clone Library Name | barley_pub |
>JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.22) (rRNA| N-glycosidase) Length = 560 Score = 296 bits (757), Expect = 4e-80 Identities = 147/159 (92%), Positives = 147/159 (92%) Frame = +1 Query: 115 MALDKVAPIVIVTPFNVMTDRYDEFIEKVRKALAGTAGAKVGPKPKSKVESPVLDKGTFP 294 MALDKVAPIVIVTPFNVMTDRYDEFIEKVRKALAGTAGAKVGPKPKSKVESPVLDKGTFP Sbjct: 1 MALDKVAPIVIVTPFNVMTDRYDEFIEKVRKALAGTAGAKVGPKPKSKVESPVLDKGTFP 60 Query: 295 VEQPPRWIHVELHXXXXXXXXXXXXVAIRSDDAYIMGFTNSTGRWFQLSKTGTTYKLVDD 474 VEQPPRWIHVELH VAIRSDDAYIMGFTNSTGRWFQLSKTGTTYKLVDD Sbjct: 61 VEQPPRWIHVELHGKTQGTTTPKPKVAIRSDDAYIMGFTNSTGRWFQLSKTGTTYKLVDD 120 Query: 475 KAVMAGFDGNYNTLVGGVNNLPTLNLNKFSMAQAAAALW 591 KAVMAGFDGNYNTLVGGVNNLPTLNLNKFSMAQAAAALW Sbjct: 121 KAVMAGFDGNYNTLVGGVNNLPTLNLNKFSMAQAAAALW 159
>RIP3_MAIZE (P25891) Ribosome-inactivating protein 3 (rRNA N-glycosidase) (EC| 3.2.2.22) (B-32 protein) Length = 300 Score = 52.8 bits (125), Expect = 8e-07 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 3/163 (1%) Frame = +1 Query: 97 PAEVVAMALDKVAP-IVIVTPFNVMTDRYDEFIEKVRKALAGTAGAKVGPKPKSKVESPV 273 P++++A ++ P + P Y FI VRK + G + PV Sbjct: 8 PSDLMAQTNKRIVPKFTEIFPVEDANYPYSAFIASVRKDVIKHCTDHKG------IFQPV 61 Query: 274 LDKGTFPVEQ--PPRWIHVELHXXXXXXXXXXXXVAIRSDDAYIMGFTNSTGRWFQLSKT 447 L P E+ P W++ EL +AIR D+ Y++GF G W++ K Sbjct: 62 L-----PPEKKVPELWLYTELKTRTSSIT-----LAIRMDNLYLVGFRTPGGVWWEFGKD 111 Query: 448 GTTYKLVDDKAVMAGFDGNYNTLVGGVNNLPTLNLNKFSMAQA 576 G T+ L+ D GF G Y L+G L T+ + + M +A Sbjct: 112 GDTH-LLGDNPRWLGFGGRYQDLIGN-KGLETVTMGRAEMTRA 152
>RIP1_HORVU (P22244) Protein synthesis inhibitor I (EC 3.2.2.22)| (Ribosome-inactivating protein I) (rRNA N-glycosidase) Length = 280 Score = 52.8 bits (125), Expect = 8e-07 Identities = 48/163 (29%), Positives = 64/163 (39%), Gaps = 5/163 (3%) Frame = +1 Query: 115 MALDKVAPIVIVTPFNVMTDR--YDEFIEKVRKALAGTAGAKVGPKPKSKVESPVLDKGT 288 MA + P+ T FNV Y FI +R L A VE Sbjct: 4 MAKNVDKPLFTAT-FNVQASSADYATFIAGIRNKLRNPAHFSHNRPVLPPVE-------- 54 Query: 289 FPVEQPPRWIHVELHXXXXXXXXXXXXVAIRSDDAYIMGFTNSTGRWFQLSK---TGTTY 459 P P RW HV L +AIR+D+ Y+ GF +S G W++L+ G TY Sbjct: 55 -PNVPPSRWFHVVLKASPTSAGLT---LAIRADNIYLEGFKSSDGTWWELTPGLIPGATY 110 Query: 460 KLVDDKAVMAGFDGNYNTLVGGVNNLPTLNLNKFSMAQAAAAL 588 GF G Y L+G + L + L + +A A AL Sbjct: 111 ---------VGFGGTYRDLLGDTDKLTNVALGRQQLADAVTAL 144
>RIPX_MAIZE (P28522) Ribosome-inactivating protein precursor (EC 3.2.2.22)| (rRNA N-glycosidase) [Contains: Ribosome-inactivating protein alpha chain; Ribosome-inactivating protein beta chain] Length = 301 Score = 52.0 bits (123), Expect = 1e-06 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 3/163 (1%) Frame = +1 Query: 97 PAEVVAMALDKVAP-IVIVTPFNVMTDRYDEFIEKVRKALAGTAGAKVGPKPKSKVESPV 273 P++++A ++ P + P Y FI VRK + G + PV Sbjct: 8 PSDLMAQTNKRIVPKFTEIFPVEDANYPYSAFIASVRKDVIKHCTDHKG------IFQPV 61 Query: 274 LDKGTFPVEQ--PPRWIHVELHXXXXXXXXXXXXVAIRSDDAYIMGFTNSTGRWFQLSKT 447 L P E+ P W + EL +AIR D+ Y++GF G W++ K Sbjct: 62 L-----PPEKKVPELWFYTELKTRTSSIT-----LAIRMDNLYLVGFRTPGGVWWEFGKD 111 Query: 448 GTTYKLVDDKAVMAGFDGNYNTLVGGVNNLPTLNLNKFSMAQA 576 G T+ L+ D GF G Y L+G L T+ + + M +A Sbjct: 112 GDTH-LLGDNPRWLGFGGRYQDLIGN-KGLETVTMGRAEMTRA 152
>RIP9_MAIZE (P25892) Ribosome-inactivating protein 9 (EC 3.2.2.22) (rRNA| N-glycosidase) (B-32 protein) Length = 304 Score = 51.6 bits (122), Expect = 2e-06 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 3/162 (1%) Frame = +1 Query: 100 AEVVAMALDKVAP-IVIVTPFNVMTDRYDEFIEKVRKALAGTAGAKVGPKPKSKVESPVL 276 ++++A K+ P + P + Y FI VRK + G + PVL Sbjct: 9 SDLMAQTNKKIVPKFTEIFPVEDVNYPYSAFIASVRKDVIKHCTDHKG------IFQPVL 62 Query: 277 DKGTFPVEQ--PPRWIHVELHXXXXXXXXXXXXVAIRSDDAYIMGFTNSTGRWFQLSKTG 450 P E+ P W + EL +AIR D+ Y++GF G W++ K G Sbjct: 63 -----PPEKKVPELWFYTELKTRTSSIT-----LAIRMDNLYLVGFRTPGGVWWEFGKAG 112 Query: 451 TTYKLVDDKAVMAGFDGNYNTLVGGVNNLPTLNLNKFSMAQA 576 T+ L+ D GF G Y L+G L T+ + + M +A Sbjct: 113 DTH-LLGDNPRWLGFGGRYQDLIGN-KGLETVTMGRAEMTRA 152
>RIP2_HORVU (P04399) Protein synthesis inhibitor II (EC 3.2.2.22)| (Ribosome-inactivating protein II) (rRNA N-glycosidase) Length = 280 Score = 51.2 bits (121), Expect = 2e-06 Identities = 47/163 (28%), Positives = 63/163 (38%), Gaps = 5/163 (3%) Frame = +1 Query: 115 MALDKVAPIVIVTPFNVMTDR--YDEFIEKVRKALAGTAGAKVGPKPKSKVESPVLDKGT 288 MA + P+ T FNV Y FI +R L A VE Sbjct: 4 MAKNVDKPLFTAT-FNVQASSADYATFIAGIRNKLRNPAHFSHNEPVLPPVE-------- 54 Query: 289 FPVEQPPRWIHVELHXXXXXXXXXXXXVAIRSDDAYIMGFTNSTGRWFQLSK---TGTTY 459 P P RW HV L +AIR+D+ Y+ GF +S G W++L+ G TY Sbjct: 55 -PNVPPSRWFHVVLKASPTSAGLT---LAIRADNIYLEGFKSSDGTWWELTPGLIPGATY 110 Query: 460 KLVDDKAVMAGFDGNYNTLVGGVNNLPTLNLNKFSMAQAAAAL 588 GF G Y L+G + L + L + + A AL Sbjct: 111 ---------VGFGGTYRDLLGDTDKLTNVALGRQQLEDAVTAL 144
>ALB3_MAIZE (P10593) Albumin b-32 protein (EC 3.2.2.22) (Opaque-6 protein)| (rRNA N-glycosidase) Length = 303 Score = 35.0 bits (79), Expect = 0.16 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Frame = +1 Query: 100 AEVVAMALDKVAP-IVIVTPFNVMTDRYDEFIEKVRKALAGTAGAKVGPKPKSKVESPVL 276 ++++A K+ P + P + Y FI VRK + G + PVL Sbjct: 9 SDLMAQTNKKIVPKFTEIFPVEDVNYPYSAFIASVRKDVIKHCTDHKG------IFQPVL 62 Query: 277 DKGTFPVEQ--PPRWIHVELHXXXXXXXXXXXXVAIRSDDAYIMGFTNSTGRWFQLSKTG 450 P E+ P W + EL +AIR D+ Y++GF G W++L++ Sbjct: 63 -----PPEKKVPELWFYTELKTRTSSIT-----LAIRMDNLYLVGFRTPGGVWWELARPA 112 Query: 451 T 453 T Sbjct: 113 T 113
>PMPH_CHLTR (O84880) Probable outer membrane protein pmpH precursor| (Polymorphic membrane protein H) Length = 1016 Score = 32.0 bits (71), Expect = 1.4 Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Frame = -2 Query: 293 GNVPLSSTGLSTLDFGFGPTLAPAVPAKALRTFSMNSSYRSVITLNG--VTITMGATLSK 120 G V ++ +G ++ F T P++ L+ + S++ +T++G + +T GATL+ Sbjct: 472 GAVTINQSGNGSVIF----TAESLTPSEKLQVLNSTSNFPGALTVSGGELVVTEGATLTT 527 Query: 119 AIATTSAGRRQLAARGVVNA 60 T ++GR L + ++A Sbjct: 528 GTITATSGRVTLGSGASLSA 547
>SRF_HUMAN (P11831) Serum response factor (SRF)| Length = 508 Score = 31.6 bits (70), Expect = 1.8 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 14/95 (14%) Frame = -2 Query: 299 STGNVPLSSTGLSTLDFGF----GPTLAPAVPAKALRTF--------SMNSSYRSVITLN 156 STG+ P+SS GL L F G +A VP +A++ S +SS T + Sbjct: 325 STGSGPVSSGGLMQLPTSFTLMPGGAVAQQVPVQAIQVHQAPQQASPSRDSSTDLTQTSS 384 Query: 155 GVTITMGATLSKAIATTSAGRRQL--AARGVVNAP 57 T+T+ AT+ + T+ G + + V+ AP Sbjct: 385 SGTVTLPATIMTSSVPTTVGGHMMYPSPHAVMYAP 419
>DICER_MOUSE (Q8R418) Endoribonuclease Dicer (EC 3.1.26.-) (Double-strand-specific| ribonuclease mDCR-1) Length = 1906 Score = 31.2 bits (69), Expect = 2.3 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%) Frame = +1 Query: 28 SLSHCIASSIGAFTTPRAASC-RRPAEVVAMALD-KVAPIVIVTPFNVMTDRYDEFIEKV 201 S++ C+ + +G + T SC R A++ +L KV P++ T D E Sbjct: 1544 SIADCVEALLGCYLT----SCGERAAQLFLCSLGLKVLPVIKRTSREKALDPAQENGSSQ 1599 Query: 202 RKALAGTAGAKVGPKPKSKVESPVLDKGTFPVEQPPR 312 +K+L+G+ A VGP+ + + L+ G + PPR Sbjct: 1600 QKSLSGSCAAPVGPRSSAGKD---LEYGCLKI--PPR 1631
>MUTS2_THEMA (Q9X105) MutS2 protein| Length = 757 Score = 30.8 bits (68), Expect = 3.1 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 12/67 (17%) Frame = -2 Query: 308 GGCSTGNVPLSSTGLSTLDFGFGPTLAPAVPAKALR-----------TFSMN-SSYRSVI 165 GG S G V +G + +DFGF L VP LR TFS SS+R+ I Sbjct: 625 GGTSVGKVVEVKSGTALVDFGF---LRLKVPVSKLRKTKKEEKKETSTFSYKPSSFRTEI 681 Query: 164 TLNGVTI 144 + G+T+ Sbjct: 682 DIRGMTV 688
>YKO8_CAEEL (Q86DA7) Hypothetical protein C05B5.8| Length = 177 Score = 30.4 bits (67), Expect = 4.0 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Frame = -1 Query: 339 LAVELDVDPPRRLLHGKRPLV----QHGAFYLGFWFWPYLGTSSAGQSFAYLLNELIV 178 ++ ++ +DPP+ L RPLV GA FW G AG F LL +L++ Sbjct: 1 MSTQIPMDPPKFLCMPARPLVVGLAVFGAIRSFVQFWMSSGFGMAGTHFCVLLLDLLL 58
>NIFV_AZOCH (P23122) Homocitrate synthase (EC 2.3.3.14)| Length = 382 Score = 29.6 bits (65), Expect = 6.8 Identities = 22/50 (44%), Positives = 27/50 (54%) Frame = -1 Query: 468 DELVRGPRLAQLEPPPCAVGETHDVGVVAPDGHLGFRRCRSLRLAVELDV 319 D +VR +AQ PP A +T VGV+ P G L R RL VEL+V Sbjct: 144 DFIVRVGAVAQAARPPPAFADT--VGVMEPFGMLDRFRFLRQRLDVELEV 191
>LEPA_SALTY (P0A1W4) GTP-binding protein lepA| Length = 599 Score = 29.6 bits (65), Expect = 6.8 Identities = 21/71 (29%), Positives = 27/71 (38%) Frame = +1 Query: 43 IASSIGAFTTPRAASCRRPAEVVAMALDKVAPIVIVTPFNVMTDRYDEFIEKVRKALAGT 222 I +GA S R PAE KV P V F V +D Y+ F + + K Sbjct: 262 IKDILGAPVGDTLTSARNPAEKALPGFKKVKPQVYAGLFPVSSDDYESFRDALGKLSLND 321 Query: 223 AGAKVGPKPKS 255 A P+ S Sbjct: 322 ASLFYEPESSS 332
>LEPA_SALTI (P0A1W5) GTP-binding protein lepA| Length = 599 Score = 29.6 bits (65), Expect = 6.8 Identities = 21/71 (29%), Positives = 27/71 (38%) Frame = +1 Query: 43 IASSIGAFTTPRAASCRRPAEVVAMALDKVAPIVIVTPFNVMTDRYDEFIEKVRKALAGT 222 I +GA S R PAE KV P V F V +D Y+ F + + K Sbjct: 262 IKDILGAPVGDTLTSARNPAEKALPGFKKVKPQVYAGLFPVSSDDYESFRDALGKLSLND 321 Query: 223 AGAKVGPKPKS 255 A P+ S Sbjct: 322 ASLFYEPESSS 332
>LEPA_SALPA (Q5PNC0) GTP-binding protein lepA| Length = 599 Score = 29.6 bits (65), Expect = 6.8 Identities = 21/71 (29%), Positives = 27/71 (38%) Frame = +1 Query: 43 IASSIGAFTTPRAASCRRPAEVVAMALDKVAPIVIVTPFNVMTDRYDEFIEKVRKALAGT 222 I +GA S R PAE KV P V F V +D Y+ F + + K Sbjct: 262 IKDILGAPVGDTLTSARNPAEKALPGFKKVKPQVYAGLFPVSSDDYESFRDALGKLSLND 321 Query: 223 AGAKVGPKPKS 255 A P+ S Sbjct: 322 ASLFYEPESSS 332
>LEPA_SALCH (Q57LC8) GTP-binding protein lepA| Length = 599 Score = 29.6 bits (65), Expect = 6.8 Identities = 21/71 (29%), Positives = 27/71 (38%) Frame = +1 Query: 43 IASSIGAFTTPRAASCRRPAEVVAMALDKVAPIVIVTPFNVMTDRYDEFIEKVRKALAGT 222 I +GA S R PAE KV P V F V +D Y+ F + + K Sbjct: 262 IKDILGAPVGDTLTSARNPAEKALPGFKKVKPQVYAGLFPVSSDDYESFRDALGKLSLND 321 Query: 223 AGAKVGPKPKS 255 A P+ S Sbjct: 322 ASLFYEPESSS 332
>PURA_STRCO (Q9X8P6) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 427 Score = 29.6 bits (65), Expect = 6.8 Identities = 21/82 (25%), Positives = 34/82 (41%) Frame = +1 Query: 16 GCTPSLSHCIASSIGAFTTPRAASCRRPAEVVAMALDKVAPIVIVTPFNVMTDRYDEFIE 195 GCTP + + + + + R + + + A I+ TP+NV D+ E Sbjct: 63 GCTPVIGNGVVVDPSVLFSELSGLNERGVDTSKLLISGNAHII--TPYNVTVDKVTERFL 120 Query: 196 KVRKALAGTAGAKVGPKPKSKV 261 RK GT G +GP K+ Sbjct: 121 GKRK--IGTTGRGIGPTYADKI 140
>YFGG_SCHPO (O13854) Hypothetical serine/threonine-rich protein C19G12.16c| precursor Length = 670 Score = 29.6 bits (65), Expect = 6.8 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Frame = -2 Query: 329 SSTWIHRGGCSTGNVPLSSTGLSTLDFGFGPTLAPAVPAKALRTF-SMNSSYRSVITLNG 153 S+T + G TG+ +S+ + PT AP+ ++ +F S NSSY + +T + Sbjct: 434 SNTTVTFTGTGTGSATFTSSPPFYSNSSVIPTSAPS----SVSSFTSSNSSYTTTLTASN 489 Query: 152 VTITM-GATLSKAIATTSA 99 T+T G A AT+S+ Sbjct: 490 TTVTFTGTGTGSATATSSS 508 Score = 29.6 bits (65), Expect = 6.8 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = -2 Query: 329 SSTWIHRGGCSTGNVPLSSTGLSTLDFGFGPTLAP-AVPAKALRTFSMNSSYRSVITLNG 153 S+T I G TG S+T S+ F ++ P +VP+ S NSSY + +T + Sbjct: 380 SNTSITYTGTGTG----SATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASN 435 Query: 152 VTITMGATLSKAIATTSA 99 T+T T + + TS+ Sbjct: 436 TTVTFTGTGTGSATFTSS 453
>RP54_THIFE (P24695) RNA polymerase sigma-54 factor| Length = 475 Score = 29.3 bits (64), Expect = 8.9 Identities = 15/68 (22%), Positives = 32/68 (47%) Frame = -1 Query: 351 RSLRLAVELDVDPPRRLLHGKRPLVQHGAFYLGFWFWPYLGTSSAGQSFAYLLNELIVPV 172 R + AVE+ R+ + K + G + ++F ++GT S G + A + L++ + Sbjct: 367 RHIADAVEMHESTVSRVTNQKYMITPRGLYEFKYFFSSHVGTDSGGSASATAIRALLIKM 426 Query: 171 RHHVERRH 148 + +H Sbjct: 427 TQAEDAQH 434 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,533,699 Number of Sequences: 219361 Number of extensions: 1487162 Number of successful extensions: 4637 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4464 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4625 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
