ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart36e11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190492.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1350 Score = 412 bits (208), Expect = e-112 Identities = 337/380 (88%) Strand = Plus / Plus Query: 145 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgaacatcctcttcgag 204 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 76 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgtccatcctcttcgag 135 Query: 205 aagttcggcttctcgcaccgcgggtcggtctccatcgcgctcaccggcggcagggccacc 264 |||||||| ||||| | ||| |||| || |||||||| ||||||||| ||| || || Sbjct: 136 aagttcgggttctcccgccgtgggttcgtgtccatcgccatcaccggcgcgaggacctcc 195 Query: 265 tccaagctcgccaagccggaccccgcgcagctcggcttcttcctcctctccgacgaggcg 324 || |||||||||||| |||| || | ||| |||| |||||||||||||||||||||||| Sbjct: 196 tcgaagctcgccaaggcggagccggatcagttcgggttcttcctcctctccgacgaggcg 255 Query: 325 ctcttcgaggccgtctacgagcagccgccgcccacggatccgaaccccaaccccgacccc 384 |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct: 256 ctcttcgaggccatctacgagcagccgccgcccacggatctgaaccccaaccccgagccc 315 Query: 385 aactcgctctgcgtcctcgccagccgctacgtcatcccgctcttcaccttcgccgaactc 444 ||| || ||||||||| |||||| |||||||| |||||||||| ||||||||| ||| Sbjct: 316 aacccgggatgcgtcctctccagcccctacgtcaagccgctcttcagcttcgccgacctc 375 Query: 445 gacgccaacggcaactgcaacaagaccttccccatctcccaccccgacgagtacagcctc 504 |||| ||||||||||| ||| ||||||||||| || |||| |||||||||||||||||| Sbjct: 376 gacggcaacggcaactacaaaaagaccttcccggtcacccaacccgacgagtacagcctc 435 Query: 505 ttcttcgccaactgcgcgcc 524 |||||||||||||||||||| Sbjct: 436 ttcttcgccaactgcgcgcc 455
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 412 bits (208), Expect = e-112 Identities = 337/380 (88%) Strand = Plus / Minus Query: 145 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgaacatcctcttcgag 204 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 35866320 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgtccatcctcttcgag 35866261 Query: 205 aagttcggcttctcgcaccgcgggtcggtctccatcgcgctcaccggcggcagggccacc 264 |||||||| ||||| | ||| |||| || |||||||| ||||||||| ||| || || Sbjct: 35866260 aagttcgggttctcccgccgtgggttcgtgtccatcgccatcaccggcgcgaggacctcc 35866201 Query: 265 tccaagctcgccaagccggaccccgcgcagctcggcttcttcctcctctccgacgaggcg 324 || |||||||||||| |||| || | ||| |||| |||||||||||||||||||||||| Sbjct: 35866200 tcgaagctcgccaaggcggagccggatcagttcgggttcttcctcctctccgacgaggcg 35866141 Query: 325 ctcttcgaggccgtctacgagcagccgccgcccacggatccgaaccccaaccccgacccc 384 |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct: 35866140 ctcttcgaggccatctacgagcagccgccgcccacggatctgaaccccaaccccgagccc 35866081 Query: 385 aactcgctctgcgtcctcgccagccgctacgtcatcccgctcttcaccttcgccgaactc 444 ||| || ||||||||| |||||| |||||||| |||||||||| ||||||||| ||| Sbjct: 35866080 aacccgggatgcgtcctctccagcccctacgtcaagccgctcttcagcttcgccgacctc 35866021 Query: 445 gacgccaacggcaactgcaacaagaccttccccatctcccaccccgacgagtacagcctc 504 |||| ||||||||||| ||| ||||||||||| || |||| |||||||||||||||||| Sbjct: 35866020 gacggcaacggcaactacaaaaagaccttcccggtcacccaacccgacgagtacagcctc 35865961 Query: 505 ttcttcgccaactgcgcgcc 524 |||||||||||||||||||| Sbjct: 35865960 ttcttcgccaactgcgcgcc 35865941 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 472 ttccccatctcccaccccgacgagtacagcctcttcttcgccaactgcg 520 ||||||||| ||| | ||| ||||||||||||| |||||||||||||| Sbjct: 35863076 ttccccatcacccgcgccggagagtacagcctctacttcgccaactgcg 35863028
>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506B12 Length = 170759 Score = 412 bits (208), Expect = e-112 Identities = 337/380 (88%) Strand = Plus / Minus Query: 145 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgaacatcctcttcgag 204 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 130778 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgtccatcctcttcgag 130719 Query: 205 aagttcggcttctcgcaccgcgggtcggtctccatcgcgctcaccggcggcagggccacc 264 |||||||| ||||| | ||| |||| || |||||||| ||||||||| ||| || || Sbjct: 130718 aagttcgggttctcccgccgtgggttcgtgtccatcgccatcaccggcgcgaggacctcc 130659 Query: 265 tccaagctcgccaagccggaccccgcgcagctcggcttcttcctcctctccgacgaggcg 324 || |||||||||||| |||| || | ||| |||| |||||||||||||||||||||||| Sbjct: 130658 tcgaagctcgccaaggcggagccggatcagttcgggttcttcctcctctccgacgaggcg 130599 Query: 325 ctcttcgaggccgtctacgagcagccgccgcccacggatccgaaccccaaccccgacccc 384 |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct: 130598 ctcttcgaggccatctacgagcagccgccgcccacggatctgaaccccaaccccgagccc 130539 Query: 385 aactcgctctgcgtcctcgccagccgctacgtcatcccgctcttcaccttcgccgaactc 444 ||| || ||||||||| |||||| |||||||| |||||||||| ||||||||| ||| Sbjct: 130538 aacccgggatgcgtcctctccagcccctacgtcaagccgctcttcagcttcgccgacctc 130479 Query: 445 gacgccaacggcaactgcaacaagaccttccccatctcccaccccgacgagtacagcctc 504 |||| ||||||||||| ||| ||||||||||| || |||| |||||||||||||||||| Sbjct: 130478 gacggcaacggcaactacaaaaagaccttcccggtcacccaacccgacgagtacagcctc 130419 Query: 505 ttcttcgccaactgcgcgcc 524 |||||||||||||||||||| Sbjct: 130418 ttcttcgccaactgcgcgcc 130399 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 472 ttccccatctcccaccccgacgagtacagcctcttcttcgccaactgcg 520 ||||||||| ||| | ||| ||||||||||||| |||||||||||||| Sbjct: 127534 ttccccatcacccgcgccggagagtacagcctctacttcgccaactgcg 127486
>dbj|AK119783.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F04, full insert sequence Length = 1678 Score = 412 bits (208), Expect = e-112 Identities = 337/380 (88%) Strand = Plus / Plus Query: 145 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgaacatcctcttcgag 204 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 137 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgtccatcctcttcgag 196 Query: 205 aagttcggcttctcgcaccgcgggtcggtctccatcgcgctcaccggcggcagggccacc 264 |||||||| ||||| | ||| |||| || |||||||| ||||||||| ||| || || Sbjct: 197 aagttcgggttctcccgccgtgggttcgtgtccatcgccatcaccggcgcgaggacctcc 256 Query: 265 tccaagctcgccaagccggaccccgcgcagctcggcttcttcctcctctccgacgaggcg 324 || |||||||||||| |||| || | ||| |||| |||||||||||||||||||||||| Sbjct: 257 tcgaagctcgccaaggcggagccggatcagttcgggttcttcctcctctccgacgaggcg 316 Query: 325 ctcttcgaggccgtctacgagcagccgccgcccacggatccgaaccccaaccccgacccc 384 |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct: 317 ctcttcgaggccatctacgagcagccgccgcccacggatctgaaccccaaccccgagccc 376 Query: 385 aactcgctctgcgtcctcgccagccgctacgtcatcccgctcttcaccttcgccgaactc 444 ||| || ||||||||| |||||| |||||||| |||||||||| ||||||||| ||| Sbjct: 377 aacccgggatgcgtcctctccagcccctacgtcaagccgctcttcagcttcgccgacctc 436 Query: 445 gacgccaacggcaactgcaacaagaccttccccatctcccaccccgacgagtacagcctc 504 |||| ||||||||||| ||| ||||||||||| || |||| |||||||||||||||||| Sbjct: 437 gacggcaacggcaactacaaaaagaccttcccggtcacccaacccgacgagtacagcctc 496 Query: 505 ttcttcgccaactgcgcgcc 524 |||||||||||||||||||| Sbjct: 497 ttcttcgccaactgcgcgcc 516
>dbj|AK106145.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H02, full insert sequence Length = 1599 Score = 412 bits (208), Expect = e-112 Identities = 337/380 (88%) Strand = Plus / Plus Query: 145 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgaacatcctcttcgag 204 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 98 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgtccatcctcttcgag 157 Query: 205 aagttcggcttctcgcaccgcgggtcggtctccatcgcgctcaccggcggcagggccacc 264 |||||||| ||||| | ||| |||| || |||||||| ||||||||| ||| || || Sbjct: 158 aagttcgggttctcccgccgtgggttcgtgtccatcgccatcaccggcgcgaggacctcc 217 Query: 265 tccaagctcgccaagccggaccccgcgcagctcggcttcttcctcctctccgacgaggcg 324 || |||||||||||| |||| || | ||| |||| |||||||||||||||||||||||| Sbjct: 218 tcgaagctcgccaaggcggagccggatcagttcgggttcttcctcctctccgacgaggcg 277 Query: 325 ctcttcgaggccgtctacgagcagccgccgcccacggatccgaaccccaaccccgacccc 384 |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct: 278 ctcttcgaggccatctacgagcagccgccgcccacggatctgaaccccaaccccgagccc 337 Query: 385 aactcgctctgcgtcctcgccagccgctacgtcatcccgctcttcaccttcgccgaactc 444 ||| || ||||||||| |||||| |||||||| |||||||||| ||||||||| ||| Sbjct: 338 aacccgggatgcgtcctctccagcccctacgtcaagccgctcttcagcttcgccgacctc 397 Query: 445 gacgccaacggcaactgcaacaagaccttccccatctcccaccccgacgagtacagcctc 504 |||| ||||||||||| ||| ||||||||||| || |||| |||||||||||||||||| Sbjct: 398 gacggcaacggcaactacaaaaagaccttcccggtcacccaacccgacgagtacagcctc 457 Query: 505 ttcttcgccaactgcgcgcc 524 |||||||||||||||||||| Sbjct: 458 ttcttcgccaactgcgcgcc 477
>dbj|AK098958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063N02, full insert sequence Length = 1656 Score = 412 bits (208), Expect = e-112 Identities = 337/380 (88%) Strand = Plus / Plus Query: 145 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgaacatcctcttcgag 204 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 138 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgtccatcctcttcgag 197 Query: 205 aagttcggcttctcgcaccgcgggtcggtctccatcgcgctcaccggcggcagggccacc 264 |||||||| ||||| | ||| |||| || |||||||| ||||||||| ||| || || Sbjct: 198 aagttcgggttctcccgccgtgggttcgtgtccatcgccatcaccggcgcgaggacctcc 257 Query: 265 tccaagctcgccaagccggaccccgcgcagctcggcttcttcctcctctccgacgaggcg 324 || |||||||||||| |||| || | ||| |||| |||||||||||||||||||||||| Sbjct: 258 tcgaagctcgccaaggcggagccggatcagttcgggttcttcctcctctccgacgaggcg 317 Query: 325 ctcttcgaggccgtctacgagcagccgccgcccacggatccgaaccccaaccccgacccc 384 |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct: 318 ctcttcgaggccatctacgagcagccgccgcccacggatctgaaccccaaccccgagccc 377 Query: 385 aactcgctctgcgtcctcgccagccgctacgtcatcccgctcttcaccttcgccgaactc 444 ||| || ||||||||| |||||| |||||||| |||||||||| ||||||||| ||| Sbjct: 378 aacccgggatgcgtcctctccagcccctacgtcaagccgctcttcagcttcgccgacctc 437 Query: 445 gacgccaacggcaactgcaacaagaccttccccatctcccaccccgacgagtacagcctc 504 |||| ||||||||||| ||| ||||||||||| || |||| |||||||||||||||||| Sbjct: 438 gacggcaacggcaactacaaaaagaccttcccggtcacccaacccgacgagtacagcctc 497 Query: 505 ttcttcgccaactgcgcgcc 524 |||||||||||||||||||| Sbjct: 498 ttcttcgccaactgcgcgcc 517
>dbj|AK066629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071A10, full insert sequence Length = 1745 Score = 412 bits (208), Expect = e-112 Identities = 337/380 (88%) Strand = Plus / Plus Query: 145 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgaacatcctcttcgag 204 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 139 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgtccatcctcttcgag 198 Query: 205 aagttcggcttctcgcaccgcgggtcggtctccatcgcgctcaccggcggcagggccacc 264 |||||||| ||||| | ||| |||| || |||||||| ||||||||| ||| || || Sbjct: 199 aagttcgggttctcccgccgtgggttcgtgtccatcgccatcaccggcgcgaggacctcc 258 Query: 265 tccaagctcgccaagccggaccccgcgcagctcggcttcttcctcctctccgacgaggcg 324 || |||||||||||| |||| || | ||| |||| |||||||||||||||||||||||| Sbjct: 259 tcgaagctcgccaaggcggagccggatcagttcgggttcttcctcctctccgacgaggcg 318 Query: 325 ctcttcgaggccgtctacgagcagccgccgcccacggatccgaaccccaaccccgacccc 384 |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct: 319 ctcttcgaggccatctacgagcagccgccgcccacggatctgaaccccaaccccgagccc 378 Query: 385 aactcgctctgcgtcctcgccagccgctacgtcatcccgctcttcaccttcgccgaactc 444 ||| || ||||||||| |||||| |||||||| |||||||||| ||||||||| ||| Sbjct: 379 aacccgggatgcgtcctctccagcccctacgtcaagccgctcttcagcttcgccgacctc 438 Query: 445 gacgccaacggcaactgcaacaagaccttccccatctcccaccccgacgagtacagcctc 504 |||| ||||||||||| ||| ||||||||||| || |||| |||||||||||||||||| Sbjct: 439 gacggcaacggcaactacaaaaagaccttcccggtcacccaacccgacgagtacagcctc 498 Query: 505 ttcttcgccaactgcgcgcc 524 |||||||||||||||||||| Sbjct: 499 ttcttcgccaactgcgcgcc 518
>dbj|AK061720.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A01, full insert sequence Length = 1599 Score = 412 bits (208), Expect = e-112 Identities = 337/380 (88%) Strand = Plus / Plus Query: 145 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgaacatcctcttcgag 204 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 98 gcggcggagatcaagcaggagtccttcaaggacgactcccgcgcgtccatcctcttcgag 157 Query: 205 aagttcggcttctcgcaccgcgggtcggtctccatcgcgctcaccggcggcagggccacc 264 |||||||| ||||| | ||| |||| || |||||||| ||||||||| ||| || || Sbjct: 158 aagttcgggttctcccgccgtgggttcgtgtccatcgccatcaccggcgcgaggacctcc 217 Query: 265 tccaagctcgccaagccggaccccgcgcagctcggcttcttcctcctctccgacgaggcg 324 || |||||||||||| |||| || | ||| |||| |||||||||||||||||||||||| Sbjct: 218 tcgaagctcgccaaggcggagccggatcagttcgggttcttcctcctctccgacgaggcg 277 Query: 325 ctcttcgaggccgtctacgagcagccgccgcccacggatccgaaccccaaccccgacccc 384 |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct: 278 ctcttcgaggccatctacgagcagccgccgcccacggatctgaaccccaaccccgagccc 337 Query: 385 aactcgctctgcgtcctcgccagccgctacgtcatcccgctcttcaccttcgccgaactc 444 ||| || ||||||||| |||||| |||||||| |||||||||| ||||||||| ||| Sbjct: 338 aacccgggatgcgtcctctccagcccctacgtcaagccgctcttcagcttcgccgacctc 397 Query: 445 gacgccaacggcaactgcaacaagaccttccccatctcccaccccgacgagtacagcctc 504 |||| ||||||||||| ||| ||||||||||| || |||| |||||||||||||||||| Sbjct: 398 gacggcaacggcaactacaaaaagaccttcccggtcacccaacccgacgagtacagcctc 457 Query: 505 ttcttcgccaactgcgcgcc 524 |||||||||||||||||||| Sbjct: 458 ttcttcgccaactgcgcgcc 477
>ref|XM_475381.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1377 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 453 cggcaactgcaacaagaccttccccatctcccaccccgacgagtacagcctcttcttcgc 512 |||| ||| ||||||||| ||||| || |||||||||||||||||||||||| |||||| Sbjct: 405 cggccactacaacaagacgttcccggtcacccaccccgacgagtacagcctctacttcgc 464 Query: 513 caactgcgcgcc 524 |||||||||||| Sbjct: 465 caactgcgcgcc 476 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 280 ccggaccccgcgcagctcggcttcttcctcctctccgacgaggcgctcttcgaggccgtc 339 ||||||||| ||||||||| ||||||||||||||||||||| || | ||| ||||| || Sbjct: 208 ccggaccccaagcagctcgggttcttcctcctctccgacgagtcgatgttccaggccatc 267 Query: 340 tacgag 345 |||||| Sbjct: 268 tacgag 273
>gb|AC108876.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1525_A02, complete sequence Length = 93826 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 453 cggcaactgcaacaagaccttccccatctcccaccccgacgagtacagcctcttcttcgc 512 |||| ||| ||||||||| ||||| || |||||||||||||||||||||||| |||||| Sbjct: 69645 cggccactacaacaagacgttcccggtcacccaccccgacgagtacagcctctacttcgc 69704 Query: 513 caactgcgcgcc 524 |||||||||||| Sbjct: 69705 caactgcgcgcc 69716 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 280 ccggaccccgcgcagctcggcttcttcctcctctccgacgaggcgctcttcgaggccgtc 339 ||||||||| ||||||||| ||||||||||||||||||||| || | ||| ||||| || Sbjct: 69448 ccggaccccaagcagctcgggttcttcctcctctccgacgagtcgatgttccaggccatc 69507 Query: 340 tacgag 345 |||||| Sbjct: 69508 tacgag 69513
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 453 cggcaactgcaacaagaccttccccatctcccaccccgacgagtacagcctcttcttcgc 512 |||| ||| ||||||||| ||||| || |||||||||||||||||||||||| |||||| Sbjct: 22574595 cggccactacaacaagacgttcccggtcacccaccccgacgagtacagcctctacttcgc 22574654 Query: 513 caactgcgcgcc 524 |||||||||||| Sbjct: 22574655 caactgcgcgcc 22574666 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 280 ccggaccccgcgcagctcggcttcttcctcctctccgacgaggcgctcttcgaggccgtc 339 ||||||||| ||||||||| ||||||||||||||||||||| || | ||| ||||| || Sbjct: 22574398 ccggaccccaagcagctcgggttcttcctcctctccgacgagtcgatgttccaggccatc 22574457 Query: 340 tacgag 345 |||||| Sbjct: 22574458 tacgag 22574463 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 ccgaaccccaaccccgaccccaac 387 ||||||||||||||| |||||||| Sbjct: 25283975 ccgaaccccaaccccaaccccaac 25283952
>dbj|AK064348.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A01, full insert sequence Length = 1746 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 453 cggcaactgcaacaagaccttccccatctcccaccccgacgagtacagcctcttcttcgc 512 |||| ||| ||||||||| ||||| || |||||||||||||||||||||||| |||||| Sbjct: 479 cggccactacaacaagacgttcccggtcacccaccccgacgagtacagcctctacttcgc 538 Query: 513 caactgcgcgcc 524 |||||||||||| Sbjct: 539 caactgcgcgcc 550 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 280 ccggaccccgcgcagctcggcttcttcctcctctccgacgaggcgctcttcgaggccgtc 339 ||||||||| ||||||||| ||||||||||||||||||||| || | ||| ||||| || Sbjct: 282 ccggaccccaagcagctcgggttcttcctcctctccgacgagtcgatgttccaggccatc 341 Query: 340 tacgag 345 |||||| Sbjct: 342 tacgag 347
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 307 ctcctctccgacgaggcgctcttcgagg 334 |||||| ||||||||||||||||||||| Sbjct: 992699 ctcctcgccgacgaggcgctcttcgagg 992726
>ref|XM_847635.1| PREDICTED: Canis familiaris similar to SIN3 homolog B, transcription regulator (LOC610198), mRNA Length = 3273 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 490 gacgagtacagcctcttcttcgccaac 516 |||| |||||||||||||||||||||| Sbjct: 2095 gacgtgtacagcctcttcttcgccaac 2121
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 294 gctcggcttcttcctcctctccgacga 320 ||||| ||||||||||||||||||||| Sbjct: 7947839 gctcgtcttcttcctcctctccgacga 7947865
>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09 Length = 160665 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 294 gctcggcttcttcctcctctccgacga 320 ||||| ||||||||||||||||||||| Sbjct: 71254 gctcgtcttcttcctcctctccgacga 71280
>dbj|AK104645.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-G11, full insert sequence Length = 1228 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 294 gctcggcttcttcctcctctccgacga 320 ||||| ||||||||||||||||||||| Sbjct: 198 gctcgtcttcttcctcctctccgacga 224
>dbj|AK067000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091I12, full insert sequence Length = 1239 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 294 gctcggcttcttcctcctctccgacga 320 ||||| ||||||||||||||||||||| Sbjct: 198 gctcgtcttcttcctcctctccgacga 224
>tpe|BN000558.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx29 gene for class III peroxidase 29 precursor, exons 1-3 Length = 1184 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 294 gctcggcttcttcctcctctccgacga 320 ||||| ||||||||||||||||||||| Sbjct: 33 gctcgtcttcttcctcctctccgacga 59
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 tcaccttcgccgaactcgacg 448 ||||||||||||||||||||| Sbjct: 487306 tcaccttcgccgaactcgacg 487286
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 tcaccttcgccgaactcgacg 448 ||||||||||||||||||||| Sbjct: 1710822 tcaccttcgccgaactcgacg 1710802 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 435 cgccgaactcgacgccaacggcaa 458 ||||||||||| |||||||||||| Sbjct: 1030080 cgccgaactcgtcgccaacggcaa 1030057
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 432 cttcgccgaactcgacgccaacggc 456 ||||||||||||||||||| ||||| Sbjct: 1602224 cttcgccgaactcgacgcccacggc 1602248
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 gcgggtcggtctccatcgcgc 244 ||||||||||||||||||||| Sbjct: 22889267 gcgggtcggtctccatcgcgc 22889287
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0502H06 Length = 165630 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 gcgggtcggtctccatcgcgc 244 ||||||||||||||||||||| Sbjct: 64089 gcgggtcggtctccatcgcgc 64109
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 228 gtcggtctccatcgcgctcaccggc 252 ||||||| ||||||||||||||||| Sbjct: 1486603 gtcggtcgccatcgcgctcaccggc 1486627
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 tcttcctcctctccgacgaggcgc 325 |||||||| ||||||||||||||| Sbjct: 1345237 tcttcctcgtctccgacgaggcgc 1345260
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06, complete sequence Length = 142068 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 ccgaaccccaaccccgaccccaac 387 ||||||||||||||| |||||||| Sbjct: 18579 ccgaaccccaaccccaaccccaac 18556
>ref|XM_586037.2| PREDICTED: Bos taurus similar to Zinc finger BED domain containing protein 1 (dREF homolog) (Putative Ac-like transposable element) (LOC539266), mRNA Length = 4473 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 aagccggaccccgcgcagctcggc 300 ||||||||||||||||||| |||| Sbjct: 538 aagccggaccccgcgcagcccggc 561
>gb|AE009239.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 9 of 187 of the complete sequence Length = 11952 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cccgctcttcaccttcgccg 439 |||||||||||||||||||| Sbjct: 1355 cccgctcttcaccttcgccg 1336
>gb|AE008375.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 179 of 187 of the complete sequence Length = 10480 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 cccgctcttcaccttcgccg 439 |||||||||||||||||||| Sbjct: 3739 cccgctcttcaccttcgccg 3758
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 gcagctcggcttcttcctcc 310 |||||||||||||||||||| Sbjct: 4702502 gcagctcggcttcttcctcc 4702483
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 cctcttcgagaagttcggcttctc 218 |||| ||||||||||||||||||| Sbjct: 248876 cctcgtcgagaagttcggcttctc 248853
>emb|AL023812.1|CEF09D5 Caenorhabditis elegans Cosmid F09D5, complete sequence Length = 9109 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 tcgcaccgcgggtcggtctc 236 |||||||||||||||||||| Sbjct: 1526 tcgcaccgcgggtcggtctc 1545
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 actcccgcgcgaacatcctcttcg 202 |||||||||||||| ||||||||| Sbjct: 132172 actcccgcgcgaacctcctcttcg 132195
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 323 cgctcttcgaggccgtctacgagc 346 |||||| ||||||||||||||||| Sbjct: 114557 cgctctacgaggccgtctacgagc 114534
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 cgcagctcggcttcttcctc 309 |||||||||||||||||||| Sbjct: 3000871 cgcagctcggcttcttcctc 3000890
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 cgcagctcggcttcttcctc 309 |||||||||||||||||||| Sbjct: 704797 cgcagctcggcttcttcctc 704778
>gb|AE012229.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 137 of 460 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 cgagaagttcggcttctcgc 220 |||||||||||||||||||| Sbjct: 1836 cgagaagttcggcttctcgc 1817
>dbj|AB226883.1| Aspergillus oryzae cDNA, contig sequence: AoEST3745 Length = 702 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 gcagggccacctccaagctc 273 |||||||||||||||||||| Sbjct: 395 gcagggccacctccaagctc 414
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gcagggccacctccaagctc 273 |||||||||||||||||||| Sbjct: 812752 gcagggccacctccaagctc 812733
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cgagaagttcggcttctcgc 220 |||||||||||||||||||| Sbjct: 4431864 cgagaagttcggcttctcgc 4431883
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtcgccggggccgtcctccg 137 |||||||||||||||||||| Sbjct: 27109416 gtcgccggggccgtcctccg 27109435 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtcgccggggccgtcctccg 137 |||||||||||||||||||| Sbjct: 27109362 gtcgccggggccgtcctccg 27109381 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtcgccggggccgtcctccg 137 |||||||||||||||||||| Sbjct: 27109282 gtcgccggggccgtcctccg 27109301
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ggcttcttcctcctctccga 317 |||||||||||||||||||| Sbjct: 2953166 ggcttcttcctcctctccga 2953185
>gb|AE004845.1| Pseudomonas aeruginosa PAO1, section 406 of 529 of the complete genome Length = 11040 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 cccgctcttcaccttcgccg 439 |||||||||||||||||||| Sbjct: 2769 cccgctcttcaccttcgccg 2788
>gb|AC104056.5| Homo sapiens cosmid clone XXcos-2052C14 from 2, complete sequence Length = 36883 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 364 ccgaaccccaaccccgaccccaac 387 ||||||||||||||| |||||||| Sbjct: 411 ccgaaccccaaccccaaccccaac 434
>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0050B07 Length = 142134 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ggcttcttcctcctctccga 317 |||||||||||||||||||| Sbjct: 123453 ggcttcttcctcctctccga 123472
>emb|AJ336060.1|HSA336060 Homo sapiens genomic sequence surrounding NotI site, clone NL1-FO8RS Length = 575 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 334 gccgtctacgagcagccgccgcccacgg 361 ||||||||| ||||||||||||||||| Sbjct: 281 gccgtctacctgcagccgccgcccacgg 308
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 ccgctacgtcatcccgctct 427 |||||||||||||||||||| Sbjct: 25747 ccgctacgtcatcccgctct 25728
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 cgacgaggcgctcttcgaggccgt 338 |||||||| ||||||||||||||| Sbjct: 585952 cgacgaggagctcttcgaggccgt 585929
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtcgccggggccgtcctccg 137 |||||||||||||||||||| Sbjct: 27035012 gtcgccggggccgtcctccg 27035031 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtcgccggggccgtcctccg 137 |||||||||||||||||||| Sbjct: 27034958 gtcgccggggccgtcctccg 27034977 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtcgccggggccgtcctccg 137 |||||||||||||||||||| Sbjct: 27034878 gtcgccggggccgtcctccg 27034897
>emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131300 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 gtcgccggggccgtcctccg 137 |||||||||||||||||||| Sbjct: 46955 gtcgccggggccgtcctccg 46936 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 gtcgccggggccgtcctccg 137 |||||||||||||||||||| Sbjct: 46875 gtcgccggggccgtcctccg 46856 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 gtcgccggggccgtcctccg 137 |||||||||||||||||||| Sbjct: 46821 gtcgccggggccgtcctccg 46802
>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145816 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtcgccggggccgtcctccg 137 |||||||||||||||||||| Sbjct: 48311 gtcgccggggccgtcctccg 48330 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtcgccggggccgtcctccg 137 |||||||||||||||||||| Sbjct: 48257 gtcgccggggccgtcctccg 48276 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtcgccggggccgtcctccg 137 |||||||||||||||||||| Sbjct: 48177 gtcgccggggccgtcctccg 48196
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 agaagttcggcttctcgcac 222 |||||||||||||||||||| Sbjct: 968912 agaagttcggcttctcgcac 968893
>dbj|AB006480.1| Comamonas testosteroni aphR gene, complete cds Length = 1764 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 catcgcgctcaccggcggca 256 |||||||||||||||||||| Sbjct: 249 catcgcgctcaccggcggca 230 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,713,512 Number of Sequences: 3902068 Number of extensions: 2713512 Number of successful extensions: 75351 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73872 Number of HSP's gapped (non-prelim): 1479 length of query: 524 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 501 effective length of database: 17,143,297,704 effective search space: 8588792149704 effective search space used: 8588792149704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
