ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart36e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LE14B_LITER (Q40153) LEC14B protein 55 1e-07
2LE14B_PRUAR (O24467) LEC14B homolog 42 0.001
3HBT1_YEAST (Q07653) Protein HBT1 (HUB1 target protein 1) 30 5.0
4CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2 30 6.5
5SWP82_YEAST (P43554) SWI/SNF global transcription activator comp... 29 8.5

>LE14B_LITER (Q40153) LEC14B protein|
          Length = 473

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
 Frame = +1

Query: 301 MGYGMSRLHEGYSEHEGQNSDGSSSVE--VNNDFSKLNNDIFHMTRLGSGPSESIRKSM- 471
           MGY MSR     S     +SD  +S +  +N     L+++I  +TRL S P E++ + + 
Sbjct: 1   MGYAMSRFETDVSVIFSSSSDSETSHDSLINKPVKNLDHEIAQLTRLRSAPHENLSRDLL 60

Query: 472 -DRV---SVTRLLRGREVNSSGNGKFSPVDRAFVLGH*LP 579
             RV   S  ++L GRE N SG G+FS  D   V+   LP
Sbjct: 61  VKRVLPLSTMKMLAGREANVSGRGRFSSADCCHVVSRHLP 100



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>LE14B_PRUAR (O24467) LEC14B homolog|
          Length = 475

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
 Frame = +1

Query: 328 EGYSEHEGQNSDGSSSVEVNNDFSKLNNDIFHMTRLGSGPSESIRKSMDR-----VSVTR 492
           EG    +G N       EV+NDF   +++I  +T+  S P + + + M       VS  +
Sbjct: 21  EGSGSSKGPN-------EVSNDF---DHEIAQLTKHRSRPHQLLSQDMPGKSRLLVSTMK 70

Query: 493 LLRGREVNSSGNGKFSPVDRAFVLGH*LP 579
           +L GRE N SG G+FS  D   VL   LP
Sbjct: 71  MLVGRESNHSGRGRFSSADGCHVLSRYLP 99



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>HBT1_YEAST (Q07653) Protein HBT1 (HUB1 target protein 1)|
          Length = 1046

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 238  WSLHFDEHLEGELIYI*QLKTMGYGMSRLHEGYSEHEGQNSDGSSSVEVNN 390
            +S+H +   +G  + +    +MG G S+ H  +  H  QNS   S  + NN
Sbjct: 942  YSIHNETTSQGRKVSV---GSMGSGKSKHHHNHHRHSRQNSSKGSDYDYNN 989



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>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2|
          Length = 1484

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 57  EHGGEKQPPTLKRPVSDDGRIAASSIPP 140
           E+GG+  PPT + P S D + ++S+ PP
Sbjct: 591 ENGGKSLPPTRRAPSSGDDQSSSSTQPP 618



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>SWP82_YEAST (P43554) SWI/SNF global transcription activator complex component|
           SWP82
          Length = 623

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
 Frame = +1

Query: 289 QLKTMGYGMSRLHEGYSEHEGQNSDGSSSVEVNNDFSKLNNDIFHMTRLGSG------PS 450
           Q+K M   + R  E  +++E Q  DGS+S+ + N    +N     + R+ S        S
Sbjct: 334 QMKAMDIPIGRHEELLAQYESQAPDGSASISLPNHIPSVNPSNKPIKRMLSSILDINVSS 393

Query: 451 ESIRKSMDRVSVTRLLRGREVNSS 522
              +KS +   +  + +G+  N++
Sbjct: 394 SKNKKSEENEMIKPMNKGQHKNNT 417


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,956,227
Number of Sequences: 219361
Number of extensions: 1564703
Number of successful extensions: 4560
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4555
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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