Clone Name | bart36d11 |
---|---|
Clone Library Name | barley_pub |
>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence Length = 153351 Score = 109 bits (55), Expect = 1e-20 Identities = 144/173 (83%), Gaps = 3/173 (1%) Strand = Plus / Minus Query: 20 gaagacggtggttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacct 79 |||||||||||||||||||||||||||| ||||| |||||||| ||||||| || || Sbjct: 132442 gaagacggtggttctctaccccggcctcgccgtcggccacttcaaccccatgatggtgct 132383 Query: 80 cgccggcaccctcgtcgaccacggctacgccgtctccgtcgcgctcatcgaccccgcggt 139 ||||| | | || | |||||||||||||||||| |||||||||||||| |||| |||| Sbjct: 132382 cgccgacgtcttcctggaccacggctacgccgtcgccgtcgcgctcatcaacccgtcggt 132323 Query: 140 ca---acggggaccccgccttccgcgccgtcgtcgcccgcgcggtcgcctcca 189 || ||| ||| |||||||| ||||| |||||||||||| ||| |||||| Sbjct: 132322 caaggacgacgacgccgccttcaccgccgccgtcgcccgcgccgtctcctcca 132270 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Minus Query: 20 gaagacggtggttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacct 79 |||||||||||||||||||||||||||| ||||| ||||| | ||||||| || | || Sbjct: 117239 gaagacggtggttctctaccccggcctcgccgtcggccacctgaaccccatgatggagct 117180 Query: 80 cgccggcaccctcgtcgaccacggctacgccgtctccgtcgcgctcatcgaccc 133 ||||| | | || | |||||||||||||||||| |||| |||||||||||||| Sbjct: 117179 cgccgacgtcttcctggaccacggctacgccgtcgccgtggcgctcatcgaccc 117126
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 109 bits (55), Expect = 1e-20 Identities = 144/173 (83%), Gaps = 3/173 (1%) Strand = Plus / Minus Query: 20 gaagacggtggttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacct 79 |||||||||||||||||||||||||||| ||||| |||||||| ||||||| || || Sbjct: 18490012 gaagacggtggttctctaccccggcctcgccgtcggccacttcaaccccatgatggtgct 18489953 Query: 80 cgccggcaccctcgtcgaccacggctacgccgtctccgtcgcgctcatcgaccccgcggt 139 ||||| | | || | |||||||||||||||||| |||||||||||||| |||| |||| Sbjct: 18489952 cgccgacgtcttcctggaccacggctacgccgtcgccgtcgcgctcatcaacccgtcggt 18489893 Query: 140 ca---acggggaccccgccttccgcgccgtcgtcgcccgcgcggtcgcctcca 189 || ||| ||| |||||||| ||||| |||||||||||| ||| |||||| Sbjct: 18489892 caaggacgacgacgccgccttcaccgccgccgtcgcccgcgccgtctcctcca 18489840
>gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1187_E11, complete sequence Length = 133352 Score = 103 bits (52), Expect = 6e-19 Identities = 91/104 (87%) Strand = Plus / Minus Query: 33 ctctaccccggcctcaccgtcagccacttcgtccccatggtgcacctcgccggcaccctc 92 ||||||||||| || |||||||||||||| |||||||| |||| ||||||| | ||| Sbjct: 42205 ctctaccccggggtcgccgtcagccacttcctccccatgatgcagctcgccgacgagctc 42146 Query: 93 gtcgaccacggctacgccgtctccgtcgcgctcatcgaccccgc 136 ||||||||||| || |||||| |||||||||||||||||||||| Sbjct: 42145 gtcgaccacggttatgccgtcgccgtcgcgctcatcgaccccgc 42102 Score = 103 bits (52), Expect = 6e-19 Identities = 94/108 (87%) Strand = Plus / Minus Query: 28 tggttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacctcgccggca 87 |||||||||||||||||||| |||||||||||||| |||||||| |||| |||||| | Sbjct: 30385 tggttctctaccccggcctctccgtcagccacttcctccccatgatgcagttcgccgacg 30326 Query: 88 ccctcgtcgaccacggctacgccgtctccgtcgcgctcatcgaccccg 135 ||| |||||| |||||||||| || ||||||| ||||||||||||| Sbjct: 30325 agctcatcgaccgcggctacgccatcaccgtcgcactcatcgaccccg 30278 Score = 63.9 bits (32), Expect = 5e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 28 tggttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacctcgccggca 87 |||| |||||||| |||||| | |||||||||||| |||| ||| || | ||||||| | Sbjct: 45561 tggtgctctaccctggcctctctgtcagccacttcctcccgatgatgaagctcgccgacg 45502 Query: 88 ccctcgtcgaccacggctacgccgtctccgtcgcgctcatcgac 131 ||||| || ||||| ||||||||| ||||||| ||||||||| Sbjct: 45501 agctcgtggagcacggatacgccgtcaccgtcgcactcatcgac 45458
>gb|AC109596.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1593_C11, complete sequence Length = 112065 Score = 103 bits (52), Expect = 6e-19 Identities = 94/108 (87%) Strand = Plus / Minus Query: 28 tggttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacctcgccggca 87 |||||||||||||||||||| |||||||||||||| |||||||| |||| |||||| | Sbjct: 108695 tggttctctaccccggcctctccgtcagccacttcctccccatgatgcagttcgccgacg 108636 Query: 88 ccctcgtcgaccacggctacgccgtctccgtcgcgctcatcgaccccg 135 ||| |||||| |||||||||| || ||||||| ||||||||||||| Sbjct: 108635 agctcatcgaccgcggctacgccatcaccgtcgcactcatcgaccccg 108588
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 103 bits (52), Expect = 6e-19 Identities = 91/104 (87%) Strand = Plus / Minus Query: 33 ctctaccccggcctcaccgtcagccacttcgtccccatggtgcacctcgccggcaccctc 92 ||||||||||| || |||||||||||||| |||||||| |||| ||||||| | ||| Sbjct: 26017444 ctctaccccggggtcgccgtcagccacttcctccccatgatgcagctcgccgacgagctc 26017385 Query: 93 gtcgaccacggctacgccgtctccgtcgcgctcatcgaccccgc 136 ||||||||||| || |||||| |||||||||||||||||||||| Sbjct: 26017384 gtcgaccacggttatgccgtcgccgtcgcgctcatcgaccccgc 26017341 Score = 103 bits (52), Expect = 6e-19 Identities = 94/108 (87%) Strand = Plus / Minus Query: 28 tggttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacctcgccggca 87 |||||||||||||||||||| |||||||||||||| |||||||| |||| |||||| | Sbjct: 26005624 tggttctctaccccggcctctccgtcagccacttcctccccatgatgcagttcgccgacg 26005565 Query: 88 ccctcgtcgaccacggctacgccgtctccgtcgcgctcatcgaccccg 135 ||| |||||| |||||||||| || ||||||| ||||||||||||| Sbjct: 26005564 agctcatcgaccgcggctacgccatcaccgtcgcactcatcgaccccg 26005517 Score = 63.9 bits (32), Expect = 5e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 28 tggttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacctcgccggca 87 |||| |||||||| |||||| | |||||||||||| |||| ||| || | ||||||| | Sbjct: 26020800 tggtgctctaccctggcctctctgtcagccacttcctcccgatgatgaagctcgccgacg 26020741 Query: 88 ccctcgtcgaccacggctacgccgtctccgtcgcgctcatcgac 131 ||||| || ||||| ||||||||| ||||||| ||||||||| Sbjct: 26020740 agctcgtggagcacggatacgccgtcaccgtcgcactcatcgac 26020697 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 cggcgtcgccaagcggctcg 390 |||||||||||||||||||| Sbjct: 25187215 cggcgtcgccaagcggctcg 25187196 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 cgcgctcgtcgccttcgtcc 447 |||||||||||||||||||| Sbjct: 22338290 cgcgctcgtcgccttcgtcc 22338309
>dbj|AK111246.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-D07, full insert sequence Length = 906 Score = 103 bits (52), Expect = 6e-19 Identities = 91/104 (87%) Strand = Plus / Plus Query: 33 ctctaccccggcctcaccgtcagccacttcgtccccatggtgcacctcgccggcaccctc 92 ||||||||||| || |||||||||||||| |||||||| |||| ||||||| | ||| Sbjct: 96 ctctaccccggggtcgccgtcagccacttcctccccatgatgcagctcgccgacgagctc 155 Query: 93 gtcgaccacggctacgccgtctccgtcgcgctcatcgaccccgc 136 ||||||||||| || |||||| |||||||||||||||||||||| Sbjct: 156 gtcgaccacggttatgccgtcgccgtcgcgctcatcgaccccgc 199
>ref|NM_190780.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1533 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Plus Query: 30 gttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacctcgccggcacc 89 ||||| ||||| |||||| |||||||||||||||||||||| |||| ||||||| | || Sbjct: 16 gttctgtacccgggcctctacgtcagccacttcgtccccatgatgcagctcgccgacgcc 75 Query: 90 ctcgtcgaccacggctacgccgtctccgtcgcgctcatc 128 ||| | || ||||||||||||||| |||||||||||||| Sbjct: 76 ctcctggagcacggctacgccgtcgccgtcgcgctcatc 114 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 361 tcgaggcgctcggcgtcgccaagcggctcgggatccc 397 |||||||||||| |||||||| | |||||||||||| Sbjct: 356 tcgaggcgctcgacgtcgccagggagctcgggatccc 392
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Minus Query: 30 gttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacctcgccggcacc 89 ||||| ||||| |||||| |||||||||||||||||||||| |||| ||||||| | || Sbjct: 37677310 gttctgtacccgggcctctacgtcagccacttcgtccccatgatgcagctcgccgacgcc 37677251 Query: 90 ctcgtcgaccacggctacgccgtctccgtcgcgctcatc 128 ||| | || ||||||||||||||| |||||||||||||| Sbjct: 37677250 ctcctggagcacggctacgccgtcgccgtcgcgctcatc 37677212 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 361 tcgaggcgctcggcgtcgccaagcggctcgggatccc 397 |||||||||||| |||||||| | |||||||||||| Sbjct: 37676970 tcgaggcgctcgacgtcgccagggagctcgggatccc 37676934
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0677H08 Length = 178830 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Minus Query: 30 gttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacctcgccggcacc 89 ||||| ||||| |||||| |||||||||||||||||||||| |||| ||||||| | || Sbjct: 137784 gttctgtacccgggcctctacgtcagccacttcgtccccatgatgcagctcgccgacgcc 137725 Query: 90 ctcgtcgaccacggctacgccgtctccgtcgcgctcatc 128 ||| | || ||||||||||||||| |||||||||||||| Sbjct: 137724 ctcctggagcacggctacgccgtcgccgtcgcgctcatc 137686 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 361 tcgaggcgctcggcgtcgccaagcggctcgggatccc 397 |||||||||||| |||||||| | |||||||||||| Sbjct: 137444 tcgaggcgctcgacgtcgccagggagctcgggatccc 137408
>dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0039A07 Length = 148892 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Minus Query: 30 gttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacctcgccggcacc 89 ||||| ||||| |||||| |||||||||||||||||||||| |||| ||||||| | || Sbjct: 5611 gttctgtacccgggcctctacgtcagccacttcgtccccatgatgcagctcgccgacgcc 5552 Query: 90 ctcgtcgaccacggctacgccgtctccgtcgcgctcatc 128 ||| | || ||||||||||||||| |||||||||||||| Sbjct: 5551 ctcctggagcacggctacgccgtcgccgtcgcgctcatc 5513 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 361 tcgaggcgctcggcgtcgccaagcggctcgggatccc 397 |||||||||||| |||||||| | |||||||||||| Sbjct: 5271 tcgaggcgctcgacgtcgccagggagctcgggatccc 5235
>dbj|AK105917.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H11, full insert sequence Length = 1587 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Plus Query: 20 gaagacggtggttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacct 79 |||||||||||||||||||||||||||| ||||| ||||| | ||||||| || | || Sbjct: 114 gaagacggtggttctctaccccggcctcgccgtcggccacctgaaccccatgatggagct 173 Query: 80 cgccggcaccctcgtcgaccacggctacgccgtctccgtcgcgctcatcgaccc 133 ||||| | | || | |||||||||||||||||| |||| |||||||||||||| Sbjct: 174 cgccgacgtcttcctggaccacggctacgccgtcgccgtggcgctcatcgaccc 227
>dbj|AK099026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127L05, full insert sequence Length = 1581 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Plus Query: 20 gaagacggtggttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacct 79 |||||||||||||||||||||||||||| ||||| ||||| | ||||||| || | || Sbjct: 110 gaagacggtggttctctaccccggcctcgccgtcggccacctgaaccccatgatggagct 169 Query: 80 cgccggcaccctcgtcgaccacggctacgccgtctccgtcgcgctcatcgaccc 133 ||||| | | || | |||||||||||||||||| |||| |||||||||||||| Sbjct: 170 cgccgacgtcttcctggaccacggctacgccgtcgccgtggcgctcatcgaccc 223
>dbj|AK071910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013064H13, full insert sequence Length = 1587 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Plus Query: 20 gaagacggtggttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacct 79 |||||||||||||||||||||||||||| ||||| ||||| | ||||||| || | || Sbjct: 116 gaagacggtggttctctaccccggcctcgccgtcggccacctgaaccccatgatggagct 175 Query: 80 cgccggcaccctcgtcgaccacggctacgccgtctccgtcgcgctcatcgaccc 133 ||||| | | || | |||||||||||||||||| |||| |||||||||||||| Sbjct: 176 cgccgacgtcttcctggaccacggctacgccgtcgccgtggcgctcatcgaccc 229
>dbj|AK060997.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E09, full insert sequence Length = 1686 Score = 63.9 bits (32), Expect = 5e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 28 tggttctctaccccggcctcaccgtcagccacttcgtccccatggtgcacctcgccggca 87 |||| |||||||| |||||| | |||||||||||| |||| ||| || | ||||||| | Sbjct: 74 tggtgctctaccctggcctctctgtcagccacttcctcccgatgatgaagctcgccgacg 133 Query: 88 ccctcgtcgaccacggctacgccgtctccgtcgcgctcatcgac 131 ||||| || ||||| ||||||||| ||||||| ||||||||| Sbjct: 134 agctcgtggagcacggatacgccgtcaccgtcgcactcatcgac 177
>dbj|AK063342.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B02, full insert sequence Length = 1418 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 73 tgcacctcgccggcaccctcgtcgaccacggctacgccgtctccgtcgcgctcatc 128 |||| ||||||| | ||||| | || ||||||||||||||| |||||||||||||| Sbjct: 5 tgcagctcgccgacgccctcctggagcacggctacgccgtcgccgtcgcgctcatc 60
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 152 cgccttccgcgccgtcgtcgcccgcg 177 ||||||||||| |||||||||||||| Sbjct: 249231 cgccttccgcggcgtcgtcgcccgcg 249206
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 419 cggcgcggccgcgctcgtcgcc 440 |||||||||||||||||||||| Sbjct: 784637 cggcgcggccgcgctcgtcgcc 784616 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 cgccgtcgtcgcccgcgcgg 180 |||||||||||||||||||| Sbjct: 2395080 cgccgtcgtcgcccgcgcgg 2395099 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 cctcgccggcaccctcgtcgaccacggc 104 |||||||||| |||||||||||| |||| Sbjct: 1426791 cctcgccggcgccctcgtcgaccgcggc 1426764
>ref|XM_363898.1| Magnaporthe grisea 70-15 hypothetical protein (MG01824.4) partial mRNA Length = 3456 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 tcgacatcgtcggccgccaca 294 ||||||||||||||||||||| Sbjct: 2978 tcgacatcgtcggccgccaca 2958
>ref|XM_503874.1| Yarrowia lipolytica CLIB122, YALI0E12683g predicted mRNA Length = 2271 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 cggcccatggcgaagacggtg 29 ||||||||||||||||||||| Sbjct: 296 cggcccatggcgaagacggtg 276
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 ccccgccttccgcgccgtcgt 169 ||||||||||||||||||||| Sbjct: 1177236 ccccgccttccgcgccgtcgt 1177216
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 cgccgtcgtcgcccgcgcggt 181 ||||||||||||||||||||| Sbjct: 328163 cgccgtcgtcgcccgcgcggt 328183
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 ctcccgcccgccgaggacgcg 233 ||||||||||||||||||||| Sbjct: 860718 ctcccgcccgccgaggacgcg 860738
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 353 gctctccgtcgaggcgctcggcgtc 377 |||||||| |||||||||||||||| Sbjct: 2407505 gctctccgccgaggcgctcggcgtc 2407481 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cgcccgccgaggacgcgccc 236 |||||||||||||||||||| Sbjct: 1789376 cgcccgccgaggacgcgccc 1789357 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tccgcgaatttctctgctcc 323 |||||||||||||||||||| Sbjct: 1087506 tccgcgaatttctctgctcc 1087487
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 76 acctcgccggcaccctcgtcgaccacggc 104 |||||||||||| ||||||||||| |||| Sbjct: 27096103 acctcgccggcagcctcgtcgacctcggc 27096131 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 ctccggcgcggccgcgctcg 435 |||||||||||||||||||| Sbjct: 13300775 ctccggcgcggccgcgctcg 13300794
>dbj|AB158460.1| Streptomyces halstedii hlsA, hlsB, hlsC genes for type I polyketide synthase, type I polyketide synthase, type I polyketide synthase, complete and partial cds Length = 45102 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 80 cgccggcaccctcgtcgaccacggc 104 ||||||||| ||||||||||||||| Sbjct: 11710 cgccggcacactcgtcgaccacggc 11686
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 gcaccctcgtcgaccacggct 105 ||||||||||||||||||||| Sbjct: 7529530 gcaccctcgtcgaccacggct 7529550 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 334 acgccgtggtcgtcgactcgc 354 ||||||||||||||||||||| Sbjct: 4817840 acgccgtggtcgtcgactcgc 4817820 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 72 gtgcacctcgccggcaccctcgtcgaccacgg 103 |||| |||||||||| ||||||||||| |||| Sbjct: 6544406 gtgcccctcgccggctccctcgtcgacgacgg 6544375
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 415 cctccggcgcggccgcgctcg 435 ||||||||||||||||||||| Sbjct: 2561972 cctccggcgcggccgcgctcg 2561952 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 cgcgctcccgcccgccgagg 228 |||||||||||||||||||| Sbjct: 4455265 cgcgctcccgcccgccgagg 4455246 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 359 cgtcgaggcgctcggcgtcgccaa 382 |||||||||||||||| ||||||| Sbjct: 4398452 cgtcgaggcgctcggcctcgccaa 4398475
>gb|AC153100.3| Oryctolagus cuniculus clone LB1-192J7, complete sequence Length = 132131 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 ctcccgcccgccgaggacgcg 233 ||||||||||||||||||||| Sbjct: 26938 ctcccgcccgccgaggacgcg 26958
>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1486_E07 Length = 110494 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 76 acctcgccggcaccctcgtcgaccacggc 104 |||||||||||| ||||||||||| |||| Sbjct: 67752 acctcgccggcagcctcgtcgacctcggc 67780
>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461B08 Length = 153743 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 76 acctcgccggcaccctcgtcgaccacggc 104 |||||||||||| ||||||||||| |||| Sbjct: 149305 acctcgccggcagcctcgtcgacctcggc 149333
>dbj|AK106879.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-E09, full insert sequence Length = 1724 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 76 acctcgccggcaccctcgtcgaccacggc 104 |||||||||||| ||||||||||| |||| Sbjct: 331 acctcgccggcagcctcgtcgacctcggc 359
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 cggcccatggcgaagacggtg 29 ||||||||||||||||||||| Sbjct: 1541931 cggcccatggcgaagacggtg 1541911
>gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07, complete sequence Length = 146712 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 cggcgtcgccaagcggctcg 390 |||||||||||||||||||| Sbjct: 50056 cggcgtcgccaagcggctcg 50037
>ref|XM_465308.1| Oryza sativa (japonica cultivar-group), mRNA Length = 474 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ctccggcgcggccgcgctcg 435 |||||||||||||||||||| Sbjct: 299 ctccggcgcggccgcgctcg 280
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccgcgccgtcgtcgcccgcg 177 |||||||||||||||||||| Sbjct: 414719 ccgcgccgtcgtcgcccgcg 414738
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 tcgcccgcgcggtcgcctcc 188 |||||||||||||||||||| Sbjct: 886035 tcgcccgcgcggtcgcctcc 886016
>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence Length = 131860 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 cgcgctcgtcgccttcgtcc 447 |||||||||||||||||||| Sbjct: 39925 cgcgctcgtcgccttcgtcc 39944
>ref|XM_425198.1| PREDICTED: Gallus gallus similar to neuralized homolog (LOC427626), mRNA Length = 1773 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ccccatggtgcacctcgccg 84 |||||||||||||||||||| Sbjct: 1300 ccccatggtgcacctcgccg 1281
>ref|XM_322615.1| Neurospora crassa OR74A hypothetical protein (NCU03358.1) partial mRNA Length = 1050 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 gctcatcgaccccgcggtcaacgg 145 ||||||||||||||| |||||||| Sbjct: 300 gctcatcgaccccgccgtcaacgg 323
>ref|XM_951374.1| Neurospora crassa OR74A hypothetical protein (NCU03358.1) partial mRNA Length = 1050 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 gctcatcgaccccgcggtcaacgg 145 ||||||||||||||| |||||||| Sbjct: 300 gctcatcgaccccgccgtcaacgg 323
>gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_B11, complete sequence Length = 162772 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 cggcgtcgccaagcggctcg 390 |||||||||||||||||||| Sbjct: 129870 cggcgtcgccaagcggctcg 129851
>gb|CP000322.1| Nitrobacter hamburgensis X14 plasmid 3, complete sequence Length = 121408 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 422 cgcggccgcgctcgtcgccttcgt 445 |||||||||||| ||||||||||| Sbjct: 82807 cgcggccgcgcttgtcgccttcgt 82784
>ref|XM_505330.1| Yarrowia lipolytica CLIB122, YALI0F12463g predicted mRNA Length = 2349 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 cctcgtcgaccacggctacg 108 |||||||||||||||||||| Sbjct: 2154 cctcgtcgaccacggctacg 2173
>emb|AL161644.6| Human DNA sequence from clone RP5-997D24 on chromosome 1 Contains the 3' end of the MRPL37 gene for mitochondrial ribosomal protein L37, two novel genes, the 3' end of the SSBP3 gene for single stranded DNA binding protein 3, a novel protein (MSTP128) and a CpG island, complete sequence Length = 83463 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 gcgctcccgcccgccgaggacgcg 233 |||||||||||||||| ||||||| Sbjct: 43528 gcgctcccgcccgccggggacgcg 43505
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 cgtcgaggcgctcggcgtcg 378 |||||||||||||||||||| Sbjct: 237555 cgtcgaggcgctcggcgtcg 237574
>emb|AL807372.1|NCB23E9 Neurospora crassa DNA linkage group II BAC clone B23E9 Length = 64710 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 gctcatcgaccccgcggtcaacgg 145 ||||||||||||||| |||||||| Sbjct: 57872 gctcatcgaccccgccgtcaacgg 57895
>emb|AL954236.1| Pan troglodytes chromosome 22 clone RP43-054L10 map 22q22.2-q22.3, complete sequence Length = 195913 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 ccgcccgccgaggacgcgcc 235 |||||||||||||||||||| Sbjct: 138347 ccgcccgccgaggacgcgcc 138366
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 cgtcgccttcgtccagctcc 453 |||||||||||||||||||| Sbjct: 5015808 cgtcgccttcgtccagctcc 5015827
>gb|AY026298.1|Y026293S06 Homo sapiens single stranded DNA binding protein-3 (SSDP3) gene, exon 5b Length = 300 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 gcgctcccgcccgccgaggacgcg 233 |||||||||||||||| ||||||| Sbjct: 213 gcgctcccgcccgccggggacgcg 236
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 cgtcgcgctcatcgaccccgcggt 139 ||||||||||||||| |||||||| Sbjct: 4785907 cgtcgcgctcatcgatcccgcggt 4785884
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 ccgtcgtcgcccgcgcggtcgcct 186 |||||||||||||||| ||||||| Sbjct: 2858099 ccgtcgtcgcccgcgccgtcgcct 2858122
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 gctcggcgtcgccaagcggc 387 |||||||||||||||||||| Sbjct: 3024000 gctcggcgtcgccaagcggc 3023981
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 tcggcgtcgccaagcggctc 389 |||||||||||||||||||| Sbjct: 3185561 tcggcgtcgccaagcggctc 3185542
>gb|AE009588.1| Brucella melitensis 16M chromosome I, section 145 of 195 of the complete sequence Length = 12956 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccgcgccgtcgtcgcccgcg 177 |||||||||||||||||||| Sbjct: 5641 ccgcgccgtcgtcgcccgcg 5622
>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete cds Length = 77457 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 154 ccttccgcgccgtcgtcgcccgcgcggtcgcc 185 |||||| ||||| | ||||||||||||||||| Sbjct: 41051 ccttccacgccgccctcgcccgcgcggtcgcc 41082
>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster, complete sequence Length = 123580 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cgccttccgcgccgtcgtcg 171 |||||||||||||||||||| Sbjct: 8242 cgccttccgcgccgtcgtcg 8261
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 cgtcgaggcgctcggcgtcg 378 |||||||||||||||||||| Sbjct: 3097020 cgtcgaggcgctcggcgtcg 3097039
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccgcgccgtcgtcgcccgcg 177 |||||||||||||||||||| Sbjct: 436579 ccgcgccgtcgtcgcccgcg 436598
>dbj|AP005011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0622F08 Length = 140628 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 ctccggcgcggccgcgctcg 435 |||||||||||||||||||| Sbjct: 108702 ctccggcgcggccgcgctcg 108721
>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1521_G01 Length = 144102 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 ctccggcgcggccgcgctcg 435 |||||||||||||||||||| Sbjct: 26026 ctccggcgcggccgcgctcg 26045
>gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940123D9, complete sequence Length = 121336 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 gtcgaggcgctcggcgtcgc 379 |||||||||||||||||||| Sbjct: 58428 gtcgaggcgctcggcgtcgc 58409
>emb|AJ628018.2| Streptomyces sp. SCC 2136 deoxysugar biosynthetic gene cluster Length = 77550 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 cgcggccgcgctcgtcgcct 441 |||||||||||||||||||| Sbjct: 5196 cgcggccgcgctcgtcgcct 5177
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 gctcggcgtcgccaagcggc 387 |||||||||||||||||||| Sbjct: 3981808 gctcggcgtcgccaagcggc 3981789
>gb|U89712.1|RGU89712 Rhodococcus globerulus hpp operon, 3-(3-hydroxyphenyl) propionate hydroxylase (hppA), 2-hydroxy-6-ketonona-2,4-dienoate hydrolase (hppC), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (hppB), putative 3-(3-hydroxyphenyl) propionate transport protein (hppK) and putative regulatory protein (hppR) genes, complete cds Length = 6040 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 tgttcacctccggcgcggcc 428 |||||||||||||||||||| Sbjct: 36 tgttcacctccggcgcggcc 17
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccgcgccgtcgtcgcccgcg 177 |||||||||||||||||||| Sbjct: 432883 ccgcgccgtcgtcgcccgcg 432902
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 cctcgtcgaccacggctacg 108 |||||||||||||||||||| Sbjct: 1667635 cctcgtcgaccacggctacg 1667654
>gb|M55595.1|DOGGSA Canine GTP-binding regulatory protein alpha subunit, exon 1' Length = 1038 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 gcccgccgaggacgcgccca 237 |||||||||||||||||||| Sbjct: 396 gcccgccgaggacgcgccca 377 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,728,711 Number of Sequences: 3902068 Number of extensions: 2728711 Number of successful extensions: 68988 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64787 Number of HSP's gapped (non-prelim): 4199 length of query: 543 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 520 effective length of database: 17,143,297,704 effective search space: 8914514806080 effective search space used: 8914514806080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)