Clone Information

BLAST Search Result

Clone Name	bart36d05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_470796.1\| Oryza sativa (japonica cultivar-group), mRNA	149	1e-32
2	ref\|XM_470792.1\| Oryza sativa (japonica cultivar-group), mRNA	143	7e-31
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	121	2e-24
4	gb\|AC092075.7\| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genom...	121	2e-24
5	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	121	2e-24
6	ref\|XM_470794.1\| Oryza sativa (japonica cultivar-group), mRNA	84	5e-13
7	dbj\|AK063170.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	84	5e-13
8	gb\|AF377338.1\| Myxococcus xanthus putative sensory histidine kin...	48	0.030
9	emb\|AL939108.1\|SCO939108 Streptomyces coelicolor A3(2) complete ...	46	0.12
10	emb\|AJ582817.3\| Streptomyces kanamyceticus kanamycin biosyntheti...	44	0.47
11	gb\|AC131175.1\| Genomic sequence for Oryza sativa, Nipponbare str...	44	0.47
12	dbj\|AB164642.1\| Streptomyces kanamyceticus kanamycin biosyntheti...	44	0.47
13	emb\|AJ628422.2\| Streptomyces kanamyceticus partial kanamycin bio...	44	0.47
14	gb\|DQ278492.1\| Lysobacter lactamgenus nonribosomal peptide synth...	44	0.47
15	gb\|CP000152.1\| Burkholderia sp. 383 chromosome 2, complete sequence	42	1.9
16	ref\|XM_470787.1\| Oryza sativa (japonica cultivar-group), mRNA	42	1.9
17	gb\|AF428150.1\| Hypocrea jecorina xylitol dehydrogenase (xdh1) ge...	42	1.9
18	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	42	1.9
19	gb\|AY816233.1\| Rattus norvegicus organic anion transporter 2 mRN...	40	7.3
20	ref\|XM_512530.1\| PREDICTED: Pan troglodytes similar to GEM inter...	40	7.3
21	gb\|AC166162.6\| Mus musculus BAC clone RP23-436K10 from chromosom...	40	7.3
22	ref\|NM_053537.1\| Rattus norvegicus solute carrier family 22 (org...	40	7.3
23	gb\|CP000079.1\| Leishmania major strain Friedlin chromosome 27, c...	40	7.3
24	ref\|XM_364888.1\| Magnaporthe grisea 70-15 hypothetical protein (...	40	7.3
25	gb\|BC067709.1\| Danio rerio zgc:85942, mRNA (cDNA clone MGC:85942...	40	7.3
26	ref\|NM_016573.2\| Homo sapiens GEM interacting protein (GMIP), mRNA	40	7.3
27	gb\|AC142448.3\| Mus musculus BAC clone RP24-540M5 from chromosome...	40	7.3
28	ref\|XM_843060.1\| Leishmania major strain Friedlin hypothetical p...	40	7.3
29	emb\|Z78205.1\|BHT1UL Bovine herpesvirus type 1 UL22-35 genes	40	7.3
30	emb\|AJ004801.1\|BHV1CGEN Bovine herpesvirus type 1.1 complete genome	40	7.3
31	gb\|AC134545.5\| Mus musculus BAC clone RP24-470H2 from chromosome...	40	7.3
32	ref\|XM_536806.2\| PREDICTED: Canis familiaris similar to Beta-2-s...	40	7.3
33	gb\|BC032057.1\| Homo sapiens GEM interacting protein, mRNA (cDNA ...	40	7.3
34	gb\|CP000319.1\| Nitrobacter hamburgensis X14, complete genome	40	7.3
35	emb\|AL359180.17\| Human DNA sequence from clone RP11-320G21 on ch...	40	7.3
36	emb\|BX569695.1\| Synechococcus sp. WH8102 complete genome; segmen...	40	7.3
37	emb\|AL939114.1\|SCO939114 Streptomyces coelicolor A3(2) complete ...	40	7.3
38	ref\|NM_212930.1\| Danio rerio zgc:85942 (zgc:85942), mRNA	40	7.3
39	gb\|AC011458.7\| Homo sapiens chromosome 19 clone CTC-412M14, comp...	40	7.3
40	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	7.3
41	gb\|AC136213.2\| Leishmania major strain Friedlin chromosome 27 cl...	40	7.3
42	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	7.3
43	gb\|CP000159.1\| Salinibacter ruber DSM 13855, complete genome	40	7.3
44	gb\|AC134529.6\| Mus musculus BAC clone RP24-503A2 from chromosome...	40	7.3
45	gb\|L30107.1\|RATLIVTR Rattus norvegicus liver-specific transporte...	40	7.3
46	gb\|L27651.1\|RATLSTP Rattus norvegicus liver-specific transport p...	40	7.3
47	gb\|AF132541.1\| Homo sapiens Gem-interacting protein (GMIP) mRNA,...	40	7.3

>ref|XM_470796.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1110

 Score =  149 bits (75), Expect = 1e-32
 Identities = 203/245 (82%), Gaps = 3/245 (1%)
 Strand = Plus / Plus

                                                                       
Query: 296 gcggcaagaagcgtgccgtcctcgtcggcgtcagctacacgggcaccgaccacgagctca 355
           ||||||||||||| ||  ||||||||||| |||||||| | | |||||   |||||||||
Sbjct: 257 gcggcaagaagcgcgcgctcctcgtcggcatcagctacgccgccaccgggtacgagctca 316

                                                                       
Query: 356 ggggcacggtgaaggacgtcgagtgcatgaggaccctcctccgcgacaagtttggcttcc 415
            |||||| || || |||||| | ||||||     ||||||||||||    || | |||||
Sbjct: 317 agggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgcttcgccttcc 376

                                                                       
Query: 416 ccggcgactccatcctcgtcctcaccgaggagaggagcgacgagccgtacagggtgccga 475
           ||| ||||| |||||||||||||||  ||||||   |||||   ||||||||||||||||
Sbjct: 377 ccgccgactgcatcctcgtcctcacgcaggagaacggcgac---ccgtacagggtgccga 433

                                                                       
Query: 476 cgagggagaacctgctgctggcgatgcggtggctggtggaggggtgcggcgccggcgact 535
           |||||| ||||||||||  ||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 434 cgagggcgaacctgctggcggcgatgcggtggctggtggaagggtgcagcgccggcgact 493

                
Query: 536 cgctg 540
           |||||
Sbjct: 494 cgctg 498



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 172 cggtgcgcgctctgccgccgcgtgacgcgcgtcgagcg 209
           ||||||||||||||||||  ||||||||||||||||||
Sbjct: 88  cggtgcgcgctctgccgcgccgtgacgcgcgtcgagcg 125

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>ref|XM_470792.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1203

 Score =  143 bits (72), Expect = 7e-31
 Identities = 191/230 (83%), Gaps = 3/230 (1%)
 Strand = Plus / Plus

                                                                       
Query: 314 tcctcgtcggcgtcagctacacgggcaccgaccacgagctcaggggcacggtgaaggacg 373
           ||||||||||||||||||||| |||| ||  | ||||||||  ||| || || || ||||
Sbjct: 335 tcctcgtcggcgtcagctacaagggctccagctacgagctcgaggggaccgtcaacgacg 394

                                                                       
Query: 374 tcgagtgcatgaggaccctcctccgcgacaagtttggcttccccggcgactccatcctcg 433
           |||| |||||||||  ||||||| |||| |  || || ||||||| ||| ||||||||||
Sbjct: 395 tcgactgcatgaggcgcctcctcggcgagagcttcggtttccccgccgattccatcctcg 454

                                                                       
Query: 434 tcctcaccgaggagaggagcga---cgagccgtacagggtgccgacgagggagaacctgc 490
           | ||||||||||||  | ||||   ||| ||||  |||  ||||||||||| ||||||||
Sbjct: 455 tgctcaccgaggagctgggcgagggcgacccgtcgaggtcgccgacgagggcgaacctgc 514

                                                             
Query: 491 tgctggcgatgcggtggctggtggaggggtgcggcgccggcgactcgctg 540
           ||  ||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 515 tggcggcgatgcggtggctggtggaagggtgcgacgccggcgactcgctg 564



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 168 cgtccggtgcgcgctctgccgccgcgtgacgcgcgtcgagcggc 211
           |||||||||||||||||||| |||| ||||| ||||||| ||||
Sbjct: 150 cgtccggtgcgcgctctgccaccgcatgacgtgcgtcgaccggc 193

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  121 bits (61), Expect = 2e-24
 Identities = 76/81 (93%)
 Strand = Plus / Minus

                                                                            
Query: 460      ccgtacagggtgccgacgagggagaacctgctgctggcgatgcggtggctggtggagggg 519
                |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||| |||
Sbjct: 15424611 ccgtacagggtgccgacgagggcgaacctgctggcggcgatgcggtggctggtggaaggg 15424552

                                     
Query: 520      tgcggcgccggcgactcgctg 540
                ||| |||||||||||||||||
Sbjct: 15424551 tgcagcgccggcgactcgctg 15424531



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                            
Query: 471      gccgacgagggagaacctgctgctggcgatgcggtggctggtggaggggtgcggcgccgg 530
                ||||||||||| ||||||||||  ||||||||||||||||||||| ||||||| ||||||
Sbjct: 15402537 gccgacgagggcgaacctgctggcggcgatgcggtggctggtggaagggtgcgacgccgg 15402478

                          
Query: 531      cgactcgctg 540
                ||||||||||
Sbjct: 15402477 cgactcgctg 15402468



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                            
Query: 471      gccgacgagggagaacctgctgctggcgatgcggtggctggtggaggggtgcggcgccgg 530
                |||||||||||||||| |  ||  || ||||||||||||||||||||||||| |||||||
Sbjct: 15409983 gccgacgagggagaacattatgaaggagatgcggtggctggtggaggggtgccgcgccgg 15409924

                          
Query: 531      cgactcgctg 540
                ||||||||||
Sbjct: 15409923 cgactcgctg 15409914



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 106/129 (82%)
 Strand = Plus / Minus

                                                                            
Query: 314      tcctcgtcggcgtcagctacacgggcaccgaccacgagctcaggggcacggtgaaggacg 373
                ||||||||||||||||||||| |||| ||  | ||||||||  ||| || || || ||||
Sbjct: 15402777 tcctcgtcggcgtcagctacaagggctccagctacgagctcgaggggaccgtcaacgacg 15402718

                                                                            
Query: 374      tcgagtgcatgaggaccctcctccgcgacaagtttggcttccccggcgactccatcctcg 433
                |||| |||||||||  ||||||| |||| |  || || ||||||| ||| ||||||||||
Sbjct: 15402717 tcgactgcatgaggcgcctcctcggcgagagcttcggtttccccgccgattccatcctcg 15402658

                         
Query: 434      tcctcaccg 442
                | |||||||
Sbjct: 15402657 tgctcaccg 15402649



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 172      cggtgcgcgctctgccgccgcgtgacgcgcgtcgagcg 209
                ||||||||||||||||||  ||||||||||||||||||
Sbjct: 15425015 cggtgcgcgctctgccgcgccgtgacgcgcgtcgagcg 15424978



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 116/145 (80%)
 Strand = Plus / Minus

                                                                            
Query: 296      gcggcaagaagcgtgccgtcctcgtcggcgtcagctacacgggcaccgaccacgagctca 355
                ||||||||||||| ||  ||||||||||| |||||||| | | |||||   |||||||||
Sbjct: 15424846 gcggcaagaagcgcgcgctcctcgtcggcatcagctacgccgccaccgggtacgagctca 15424787

                                                                            
Query: 356      ggggcacggtgaaggacgtcgagtgcatgaggaccctcctccgcgacaagtttggcttcc 415
                 |||||| || || |||||| | ||||||     ||||||||||||    || | |||||
Sbjct: 15424786 agggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgcttcgccttcc 15424727

                                         
Query: 416      ccggcgactccatcctcgtcctcac 440
                ||| ||||| |||||||||||||||
Sbjct: 15424726 ccgccgactgcatcctcgtcctcac 15424702



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                            
Query: 168      cgtccggtgcgcgctctgccgccgcgtgacgcgcgtcgagcggc 211
                |||||||||||||||||||| |||| ||||| ||||||| ||||
Sbjct: 15402962 cgtccggtgcgcgctctgccaccgcatgacgtgcgtcgaccggc 15402919



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 225      cgcgcccccgtcgccgccgcggacgg 250
                |||||| |||||||||||||||||||
Sbjct: 12627832 cgcgccgccgtcgccgccgcggacgg 12627857



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 293      cccgcggcaagaagcgtgccgtcct 317
                |||||||||||||||| ||||||||
Sbjct: 15370326 cccgcggcaagaagcgcgccgtcct 15370302

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>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete
             sequence
          Length = 164705

 Score =  121 bits (61), Expect = 2e-24
 Identities = 76/81 (93%)
 Strand = Plus / Plus

                                                                         
Query: 460   ccgtacagggtgccgacgagggagaacctgctgctggcgatgcggtggctggtggagggg 519
             |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||| |||
Sbjct: 76915 ccgtacagggtgccgacgagggcgaacctgctggcggcgatgcggtggctggtggaaggg 76974

                                  
Query: 520   tgcggcgccggcgactcgctg 540
             ||| |||||||||||||||||
Sbjct: 76975 tgcagcgccggcgactcgctg 76995



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 65/70 (92%)
 Strand = Plus / Plus

                                                                         
Query: 471   gccgacgagggagaacctgctgctggcgatgcggtggctggtggaggggtgcggcgccgg 530
             ||||||||||| ||||||||||  ||||||||||||||||||||| ||||||| ||||||
Sbjct: 98989 gccgacgagggcgaacctgctggcggcgatgcggtggctggtggaagggtgcgacgccgg 99048

                       
Query: 531   cgactcgctg 540
             ||||||||||
Sbjct: 99049 cgactcgctg 99058



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                         
Query: 471   gccgacgagggagaacctgctgctggcgatgcggtggctggtggaggggtgcggcgccgg 530
             |||||||||||||||| |  ||  || ||||||||||||||||||||||||| |||||||
Sbjct: 91543 gccgacgagggagaacattatgaaggagatgcggtggctggtggaggggtgccgcgccgg 91602

                       
Query: 531   cgactcgctg 540
             ||||||||||
Sbjct: 91603 cgactcgctg 91612



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 106/129 (82%)
 Strand = Plus / Plus

                                                                         
Query: 314   tcctcgtcggcgtcagctacacgggcaccgaccacgagctcaggggcacggtgaaggacg 373
             ||||||||||||||||||||| |||| ||  | ||||||||  ||| || || || ||||
Sbjct: 98749 tcctcgtcggcgtcagctacaagggctccagctacgagctcgaggggaccgtcaacgacg 98808

                                                                         
Query: 374   tcgagtgcatgaggaccctcctccgcgacaagtttggcttccccggcgactccatcctcg 433
             |||| |||||||||  ||||||| |||| |  || || ||||||| ||| ||||||||||
Sbjct: 98809 tcgactgcatgaggcgcctcctcggcgagagcttcggtttccccgccgattccatcctcg 98868

                      
Query: 434   tcctcaccg 442
             | |||||||
Sbjct: 98869 tgctcaccg 98877



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 172   cggtgcgcgctctgccgccgcgtgacgcgcgtcgagcg 209
             ||||||||||||||||||  ||||||||||||||||||
Sbjct: 76511 cggtgcgcgctctgccgcgccgtgacgcgcgtcgagcg 76548



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 116/145 (80%)
 Strand = Plus / Plus

                                                                         
Query: 296   gcggcaagaagcgtgccgtcctcgtcggcgtcagctacacgggcaccgaccacgagctca 355
             ||||||||||||| ||  ||||||||||| |||||||| | | |||||   |||||||||
Sbjct: 76680 gcggcaagaagcgcgcgctcctcgtcggcatcagctacgccgccaccgggtacgagctca 76739

                                                                         
Query: 356   ggggcacggtgaaggacgtcgagtgcatgaggaccctcctccgcgacaagtttggcttcc 415
              |||||| || || |||||| | ||||||     ||||||||||||    || | |||||
Sbjct: 76740 agggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgcttcgccttcc 76799

                                      
Query: 416   ccggcgactccatcctcgtcctcac 440
             ||| ||||| |||||||||||||||
Sbjct: 76800 ccgccgactgcatcctcgtcctcac 76824



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 168   cgtccggtgcgcgctctgccgccgcgtgacgcgcgtcgagcggc 211
             |||||||||||||||||||| |||| ||||| ||||||| ||||
Sbjct: 98564 cgtccggtgcgcgctctgccaccgcatgacgtgcgtcgaccggc 98607



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 293    cccgcggcaagaagcgtgccgtcct 317
              |||||||||||||||| ||||||||
Sbjct: 131200 cccgcggcaagaagcgcgccgtcct 131224

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  121 bits (61), Expect = 2e-24
 Identities = 76/81 (93%)
 Strand = Plus / Minus

                                                                            
Query: 460      ccgtacagggtgccgacgagggagaacctgctgctggcgatgcggtggctggtggagggg 519
                |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||| |||
Sbjct: 15419145 ccgtacagggtgccgacgagggcgaacctgctggcggcgatgcggtggctggtggaaggg 15419086

                                     
Query: 520      tgcggcgccggcgactcgctg 540
                ||| |||||||||||||||||
Sbjct: 15419085 tgcagcgccggcgactcgctg 15419065



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                            
Query: 471      gccgacgagggagaacctgctgctggcgatgcggtggctggtggaggggtgcggcgccgg 530
                ||||||||||| ||||||||||  ||||||||||||||||||||| ||||||| ||||||
Sbjct: 15397071 gccgacgagggcgaacctgctggcggcgatgcggtggctggtggaagggtgcgacgccgg 15397012

                          
Query: 531      cgactcgctg 540
                ||||||||||
Sbjct: 15397011 cgactcgctg 15397002



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                            
Query: 471      gccgacgagggagaacctgctgctggcgatgcggtggctggtggaggggtgcggcgccgg 530
                |||||||||||||||| |  ||  || ||||||||||||||||||||||||| |||||||
Sbjct: 15404517 gccgacgagggagaacattatgaaggagatgcggtggctggtggaggggtgccgcgccgg 15404458

                          
Query: 531      cgactcgctg 540
                ||||||||||
Sbjct: 15404457 cgactcgctg 15404448



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 106/129 (82%)
 Strand = Plus / Minus

                                                                            
Query: 314      tcctcgtcggcgtcagctacacgggcaccgaccacgagctcaggggcacggtgaaggacg 373
                ||||||||||||||||||||| |||| ||  | ||||||||  ||| || || || ||||
Sbjct: 15397311 tcctcgtcggcgtcagctacaagggctccagctacgagctcgaggggaccgtcaacgacg 15397252

                                                                            
Query: 374      tcgagtgcatgaggaccctcctccgcgacaagtttggcttccccggcgactccatcctcg 433
                |||| |||||||||  ||||||| |||| |  || || ||||||| ||| ||||||||||
Sbjct: 15397251 tcgactgcatgaggcgcctcctcggcgagagcttcggtttccccgccgattccatcctcg 15397192

                         
Query: 434      tcctcaccg 442
                | |||||||
Sbjct: 15397191 tgctcaccg 15397183



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 172      cggtgcgcgctctgccgccgcgtgacgcgcgtcgagcg 209
                ||||||||||||||||||  ||||||||||||||||||
Sbjct: 15419549 cggtgcgcgctctgccgcgccgtgacgcgcgtcgagcg 15419512



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 116/145 (80%)
 Strand = Plus / Minus

                                                                            
Query: 296      gcggcaagaagcgtgccgtcctcgtcggcgtcagctacacgggcaccgaccacgagctca 355
                ||||||||||||| ||  ||||||||||| |||||||| | | |||||   |||||||||
Sbjct: 15419380 gcggcaagaagcgcgcgctcctcgtcggcatcagctacgccgccaccgggtacgagctca 15419321

                                                                            
Query: 356      ggggcacggtgaaggacgtcgagtgcatgaggaccctcctccgcgacaagtttggcttcc 415
                 |||||| || || |||||| | ||||||     ||||||||||||    || | |||||
Sbjct: 15419320 agggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgcttcgccttcc 15419261

                                         
Query: 416      ccggcgactccatcctcgtcctcac 440
                ||| ||||| |||||||||||||||
Sbjct: 15419260 ccgccgactgcatcctcgtcctcac 15419236



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                            
Query: 168      cgtccggtgcgcgctctgccgccgcgtgacgcgcgtcgagcggc 211
                |||||||||||||||||||| |||| ||||| ||||||| ||||
Sbjct: 15397496 cgtccggtgcgcgctctgccaccgcatgacgtgcgtcgaccggc 15397453



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 225      cgcgcccccgtcgccgccgcggacgg 250
                |||||| |||||||||||||||||||
Sbjct: 12624595 cgcgccgccgtcgccgccgcggacgg 12624620



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 293      cccgcggcaagaagcgtgccgtcct 317
                |||||||||||||||| ||||||||
Sbjct: 15364860 cccgcggcaagaagcgcgccgtcct 15364836

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>ref|XM_470794.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 909

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                       
Query: 471 gccgacgagggagaacctgctgctggcgatgcggtggctggtggaggggtgcggcgccgg 530
           |||||||||||||||| |  ||  || ||||||||||||||||||||||||| |||||||
Sbjct: 192 gccgacgagggagaacattatgaaggagatgcggtggctggtggaggggtgccgcgccgg 251

                     
Query: 531 cgactcgctg 540
           ||||||||||
Sbjct: 252 cgactcgctg 261

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>dbj|AK063170.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-G09, full
           insert sequence
          Length = 1347

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                       
Query: 471 gccgacgagggagaacctgctgctggcgatgcggtggctggtggaggggtgcggcgccgg 530
           |||||||||||||||| |  ||  || ||||||||||||||||||||||||| |||||||
Sbjct: 226 gccgacgagggagaacattatgaaggagatgcggtggctggtggaggggtgccgcgccgg 285

                     
Query: 531 cgactcgctg 540
           ||||||||||
Sbjct: 286 cgactcgctg 295

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>gb|AF377338.1| Myxococcus xanthus putative sensory histidine kinase and
            serine/threonine kinase associate protein KapA (kapA)
            genes, complete cds; and unknown genes
          Length = 5439

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 226  gcgcccccgtcgccgccgcggacg 249
            ||||||||||||||||||||||||
Sbjct: 4538 gcgcccccgtcgccgccgcggacg 4515

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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 232   ccgtcgccgccgcggacggtgcgctct 258
             |||||||||||||||||| ||||||||
Sbjct: 22299 ccgtcgccgccgcggacgatgcgctct 22325

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>emb|AJ582817.3| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster, strain
             ATCC12853
          Length = 47050

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 222   gggcgcgcccccgtcgccgccg 243
             ||||||||||||||||||||||
Sbjct: 21471 gggcgcgcccccgtcgccgccg 21492

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>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0030D15, from chromosome 3, complete sequence
          Length = 151972

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 225   cgcgcccccgtcgccgccgcggacgg 250
             |||||| |||||||||||||||||||
Sbjct: 49157 cgcgccgccgtcgccgccgcggacgg 49132

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>dbj|AB164642.1| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster,
            complete cds
          Length = 25467

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 222  gggcgcgcccccgtcgccgccg 243
            ||||||||||||||||||||||
Sbjct: 4180 gggcgcgcccccgtcgccgccg 4201

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>emb|AJ628422.2| Streptomyces kanamyceticus partial kanamycin biosynthesis gene cluster,
             strain DSM 40500
          Length = 41576

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 222   gggcgcgcccccgtcgccgccg 243
             ||||||||||||||||||||||
Sbjct: 18244 gggcgcgcccccgtcgccgccg 18265

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>gb|DQ278492.1| Lysobacter lactamgenus nonribosomal peptide synthetase - polyketide
            synthase hybrid (cpbI) gene, complete cds
          Length = 15150

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 109  tcgtggtgcaggcactgcggcgcggg 134
            |||||||||||||||||| |||||||
Sbjct: 1640 tcgtggtgcaggcactgctgcgcggg 1615

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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 206   agcggcaccgcagcgtgggcgcgcc 230
             |||||||||||||||| ||||||||
Sbjct: 41700 agcggcaccgcagcgttggcgcgcc 41724

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>ref|XM_470787.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1481

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 293 cccgcggcaagaagcgtgccgtcct 317
           |||||||||||||||| ||||||||
Sbjct: 303 cccgcggcaagaagcgcgccgtcct 327

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>gb|AF428150.1| Hypocrea jecorina xylitol dehydrogenase (xdh1) gene, complete cds
          Length = 2558

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 312  cgtcctcgtcggcgtcagctacacgggca 340
            ||||||||||| ||||| |||||||||||
Sbjct: 1069 cgtcctcgtcgccgtcaactacacgggca 1097

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 305     agcgtgccgtcctcgtcggcg 325
               |||||||||||||||||||||
Sbjct: 3601002 agcgtgccgtcctcgtcggcg 3601022

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>gb|AY816233.1| Rattus norvegicus organic anion transporter 2 mRNA, complete cds
          Length = 1636

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   cccaggcatcatcagcatct 28
           ||||||||||||||||||||
Sbjct: 814 cccaggcatcatcagcatct 833

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>ref|XM_512530.1| PREDICTED: Pan troglodytes similar to GEM interacting protein;
           Gem-interacting protein (LOC455880), mRNA
          Length = 2748

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 113 ggtgcaggcactgcggcgcg 132
           ||||||||||||||||||||
Sbjct: 744 ggtgcaggcactgcggcgcg 763

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>gb|AC166162.6| Mus musculus BAC clone RP23-436K10 from chromosome 6, complete sequence
          Length = 181038

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    agctcacctccatccgtggc 78
             ||||||||||||||||||||
Sbjct: 87465 agctcacctccatccgtggc 87446

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>ref|NM_053537.1| Rattus norvegicus solute carrier family 22 (organic anion
           transporter), member 7 (Slc22a7), mRNA
          Length = 1910

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   cccaggcatcatcagcatct 28
           ||||||||||||||||||||
Sbjct: 874 cccaggcatcatcagcatct 893

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>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
          Length = 1130447

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 419    gcgactccatcctcgtcctcaccg 442
              |||||||||||| |||||||||||
Sbjct: 842283 gcgactccatccgcgtcctcaccg 842306

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>ref|XM_364888.1| Magnaporthe grisea 70-15 hypothetical protein (MG09733.4) partial
           mRNA
          Length = 969

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 gccgcgtgacgcgcgtcgag 207
           ||||||||||||||||||||
Sbjct: 326 gccgcgtgacgcgcgtcgag 345

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>gb|BC067709.1| Danio rerio zgc:85942, mRNA (cDNA clone MGC:85942 IMAGE:6963406),
           complete cds
          Length = 1712

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 489 gctgctggcgatgcggtggc 508
           ||||||||||||||||||||
Sbjct: 572 gctgctggcgatgcggtggc 591

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>ref|NM_016573.2| Homo sapiens GEM interacting protein (GMIP), mRNA
          Length = 3532

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 113 ggtgcaggcactgcggcgcg 132
           ||||||||||||||||||||
Sbjct: 744 ggtgcaggcactgcggcgcg 763

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>gb|AC142448.3| Mus musculus BAC clone RP24-540M5 from chromosome 18, complete sequence
          Length = 170302

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 423   ctccatcctcgtcctcaccgagga 446
             |||||||||| |||||||||||||
Sbjct: 36587 ctccatcctcctcctcaccgagga 36564

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>ref|XM_843060.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0458)
            partial mRNA
          Length = 4542

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 419  gcgactccatcctcgtcctcaccg 442
            |||||||||||| |||||||||||
Sbjct: 3611 gcgactccatccgcgtcctcaccg 3588

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>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes
          Length = 37000

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 141   ggcgccgccggccgggtcgagctc 164
             ||||||||||||||| ||||||||
Sbjct: 10560 ggcgccgccggccggttcgagctc 10583

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>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome
          Length = 135301

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 141   ggcgccgccggccgggtcgagctc 164
             ||||||||||||||| ||||||||
Sbjct: 41360 ggcgccgccggccggttcgagctc 41383

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>gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome 18, complete sequence
          Length = 155887

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 423    ctccatcctcgtcctcaccgagga 446
              |||||||||| |||||||||||||
Sbjct: 149225 ctccatcctcctcctcaccgagga 149202

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>ref|XM_536806.2| PREDICTED: Canis familiaris similar to Beta-2-syntrophin (59 kDa
           dystrophin-associated protein A1, basic component 2)
           (Syntrophin 3) (SNT3) (Syntrophin-like) (SNTL)
           (LOC479675), mRNA
          Length = 1772

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 521 gcggcgccggcgactcgctg 540
           ||||||||||||||||||||
Sbjct: 314 gcggcgccggcgactcgctg 333

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>gb|BC032057.1| Homo sapiens GEM interacting protein, mRNA (cDNA clone
           IMAGE:5174902)
          Length = 2239

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 113 ggtgcaggcactgcggcgcg 132
           ||||||||||||||||||||
Sbjct: 702 ggtgcaggcactgcggcgcg 721

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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 92      ggccgccgaggatgacgtcg 111
               ||||||||||||||||||||
Sbjct: 4042943 ggccgccgaggatgacgtcg 4042962

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>emb|AL359180.17| Human DNA sequence from clone RP11-320G21 on chromosome 13, complete
              sequence
          Length = 159229

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 22     agcatctcaatctccatgtgatag 45
              ||||||||||||||| ||||||||
Sbjct: 113881 agcatctcaatctccctgtgatag 113904

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>emb|BX569695.1| Synechococcus sp. WH8102 complete genome; segment 7/7
          Length = 344615

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 489   gctgctggcgatgcggtggc 508
             ||||||||||||||||||||
Sbjct: 59534 gctgctggcgatgcggtggc 59515

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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    gtgccgtcctcgtcggcgtc 327
              ||||||||||||||||||||
Sbjct: 118674 gtgccgtcctcgtcggcgtc 118655

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>ref|NM_212930.1| Danio rerio zgc:85942 (zgc:85942), mRNA
          Length = 1712

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 489 gctgctggcgatgcggtggc 508
           ||||||||||||||||||||
Sbjct: 572 gctgctggcgatgcggtggc 591

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>gb|AC011458.7| Homo sapiens chromosome 19 clone CTC-412M14, complete sequence
          Length = 105238

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   ggtgcaggcactgcggcgcg 132
             ||||||||||||||||||||
Sbjct: 17676 ggtgcaggcactgcggcgcg 17657

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 116     gcaggcactgcggcgcgggc 135
               ||||||||||||||||||||
Sbjct: 2018734 gcaggcactgcggcgcgggc 2018715

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>gb|AC136213.2| Leishmania major strain Friedlin chromosome 27 clone LB02059, complete
             sequence
          Length = 102826

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 419   gcgactccatcctcgtcctcaccg 442
             |||||||||||| |||||||||||
Sbjct: 97106 gcgactccatccgcgtcctcaccg 97129

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 92      ggccgccgaggatgacgtcg 111
               ||||||||||||||||||||
Sbjct: 1116277 ggccgccgaggatgacgtcg 1116296

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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 337     ggcaccgaccacgagctcag 356
               ||||||||||||||||||||
Sbjct: 2230637 ggcaccgaccacgagctcag 2230618

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>gb|AC134529.6| Mus musculus BAC clone RP24-503A2 from chromosome 6, complete sequence
          Length = 166392

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     agctcacctccatccgtggc 78
              ||||||||||||||||||||
Sbjct: 158171 agctcacctccatccgtggc 158152

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>gb|L30107.1|RATLIVTR Rattus norvegicus liver-specific transporter gene, promoter region
          Length = 7453

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 9    cccaggcatcatcagcatct 28
            ||||||||||||||||||||
Sbjct: 2210 cccaggcatcatcagcatct 2229

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>gb|L27651.1|RATLSTP Rattus norvegicus liver-specific transport protein mRNA, complete
           cds
          Length = 1910

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   cccaggcatcatcagcatct 28
           ||||||||||||||||||||
Sbjct: 874 cccaggcatcatcagcatct 893

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>gb|AF132541.1| Homo sapiens Gem-interacting protein (GMIP) mRNA, complete cds
          Length = 3480

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 113 ggtgcaggcactgcggcgcg 132
           ||||||||||||||||||||
Sbjct: 706 ggtgcaggcactgcggcgcg 725


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,575,640
Number of Sequences: 3902068
Number of extensions: 3575640
Number of successful extensions: 82582
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80775
Number of HSP's gapped (non-prelim): 1801
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result