ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart36d01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF107025.1|AF107025 Triticum aestivum similar to histone H1 mRNA sequence Length = 1082 Score = 434 bits (219), Expect = e-118 Identities = 261/275 (94%) Strand = Plus / Plus Query: 206 ccaagacgcccaaggccaagaagccctccgccccgaggaagcccaaggccgcccccgccc 265 ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21 ccaaggcgcccaaggtgaagaagccctccgccccgaggaagcccaaggccgcccccgccc 80 Query: 266 acccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggt 325 ||||||||||||||||||||||| ||||||||||| |||| || |||||||| ||||||| Sbjct: 81 acccgacctacgctgagatggtggcggaggcgatcgccgccctgaaggagagaggcgggt 140 Query: 326 cgagcaccgtcgccatcggcaagttcatcgaggacaagcacaaggcgcacctcccggcca 385 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 141 cgagcaccgtcgccatcgccaagtacatcgaggacaagcacaaggcgcacctcccggcca 200 Query: 386 acttccgcaagatcatgctgacgcagatcaagaagctggtcgccgccggcaagctgacca 445 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 201 acttccgcaagatcctgctgacgcagatcaagaagctcgtcgccgccggcaagctgacca 260 Query: 446 aggtcaaggcctcctacaagctcgccaaggccccc 480 ||||||||| ||||||||||||| ||||||||||| Sbjct: 261 aggtcaagggctcctacaagctcaccaaggccccc 295
>gb|AF107024.1|AF107024 Triticum aestivum histone H1 WH1B.1 mRNA, complete cds Length = 1114 Score = 365 bits (184), Expect = 1e-97 Identities = 344/396 (86%), Gaps = 11/396 (2%) Strand = Plus / Plus Query: 73 gcaatgtcgaccgacgcagccgccgacatcccggtgcctcaggtggaggcgaccgccgac 132 ||||||||||| |||| | |||||| |||||| ||| |||||| |||| |||||||| Sbjct: 2 gcaatgtcgactgacgtggtcgccgatgtcccggcccctgaggtggcggcggccgccgac 61 Query: 133 cccgtcgtggagaccacggctgacgccgccgccggcgacgcgaaaccggccaaggcgacc 192 |||||||||||||||||||| || ||||||||||||||||||| ||||||||| |||| Sbjct: 62 cccgtcgtggagaccacggcagagcccgccgccggcgacgcgaacgcggccaaggagacc 121 Query: 193 aaggccaaggccgccaagacgcccaaggccaagaagccctccgccccgaggaagcccaag 252 ||||| |||| || ||||||||||||||||||||||||||||||||||| Sbjct: 122 aaggc---------caaggcggccaaggccaagaagccctccgccccgaggaagccccgc 172 Query: 253 gccgcccccgcccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaag 312 ||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||| Sbjct: 173 gccgcccccgcccacccgacctacgctgagatggtttcggaggccatcaccgccctgaag 232 Query: 313 gagaggggcgggtcgagcaccgt-cgccatcggcaagttcatcgaggacaagcacaaggc 371 ||| | ||||||||| |||| |||||||| ||||||| ||||||||||||||||||| Sbjct: 233 gagcgaacggggtcgagc-ccgtacgccatcgccaagttcgtcgaggacaagcacaaggc 291 Query: 372 gcacctcccggccaacttccgcaagatcatgctgacgcagatcaagaagctggtcgccgc 431 ||||||||||||||||||||| |||||| || | |||| ||||||||||||||||| | Sbjct: 292 gcacctcccggccaacttccgtaagatcctgtcggtgcagctcaagaagctggtcgcctc 351 Query: 432 cggcaagctgaccaaggtcaaggcctcctacaagct 467 |||||||||||||||||||||||||||||||||||| Sbjct: 352 cggcaagctgaccaaggtcaaggcctcctacaagct 387
>dbj|D87065.1| Triticum aestivum gene for histone H1, complete cds, clone:TH325 Length = 2541 Score = 365 bits (184), Expect = 1e-97 Identities = 196/200 (98%) Strand = Plus / Plus Query: 281 agatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccgtcgcca 340 |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct: 1191 agatggtgtcggaggcgatcaccgcgctgaaggagagaggcgggtcgagcaccgtggcca 1250 Query: 341 tcggcaagttcatcgaggacaagcacaaggcgcacctcccggccaacttccgcaagatca 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1251 tcggcaagttcatcgaggacaagcacaaggcgcacctcccggccaacttccgcaagatca 1310 Query: 401 tgctgacgcagatcaagaagctggtcgccgccggcaagctgaccaaggtcaaggcctcct 460 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1311 tgctgacgcagatcaagaagctcgtcgccgccggcaagctgaccaaggtcaaggcctcct 1370 Query: 461 acaagctcgccaaggccccc 480 |||||||||||||||||||| Sbjct: 1371 acaagctcgccaaggccccc 1390 Score = 291 bits (147), Expect = 1e-75 Identities = 258/293 (88%), Gaps = 24/293 (8%) Strand = Plus / Plus Query: 9 ctcacccgcatctccctcacctccggcgaaagacacaccagcgcgctcc-------cctc 61 ||||| |||||||| ||||| |||||||||| ||||||||||||||||| |||| Sbjct: 778 ctcacacgcatctctctcac-tccggcgaaa-acacaccagcgcgctcctctctcccctc 835 Query: 62 gctctcccgcagcaatgtcgaccgacgcagc---cgccgacatcccggtgcctcaggtgg 118 ||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 836 gcttccccgccgcaatgtcgaccgacgccgctgccgccgacatcccggtgcctcaggtgg 895 Query: 119 aggcgaccgccgaccccgtcgtggagaccacggctgacgccgccgccggcgacgcgaaac 178 ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| | Sbjct: 896 aggcgaccgccgaccccgtcgcggagaccaccgct---gccgccgccggcgacgcgaagc 952 Query: 179 cggccaaggcgaccaaggccaaggccgccaaga---------cgcccaaggccaagaagc 229 ||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct: 953 cggccaaggcgaccaaggccaaggccgccaagacccccaaggcgcccaaggcgaagaagc 1012 Query: 230 cctccgccccgaggaagcccaaggccgcccccgcccacccgacctacgctgag 282 |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1013 cctccgccccgaggaagcccaaggccacccccgcccacccgacctacgctgag 1065
>emb|X59872.2|TAHISTH1 T.aestivum L mRNA for histone H1 Length = 1031 Score = 353 bits (178), Expect = 4e-94 Identities = 259/286 (90%) Strand = Plus / Plus Query: 195 ggccaaggccgccaagacgcccaaggccaagaagccctccgccccgaggaagcccaaggc 254 ||||||||| ||||| || |||||||||||||| || | | ||||| ||||||| | Sbjct: 159 ggccaaggcgcccaaggcggccaaggccaagaagtccactggcccgaagaagccccgcgt 218 Query: 255 cgcccccgcccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaagga 314 | |||| ||||||||| ||||||| ||||||||||||||||||||| |||| || ||||| Sbjct: 219 caccccggcccacccgtcctacgccgagatggtgtcggaggcgatcgccgccctgaagga 278 Query: 315 gaggggcgggtcgagcaccgtcgccatcggcaagttcatcgaggacaagcacaaggcgca 374 |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct: 279 gaggagcgggtcgagcaccatcgcgatcggcaagttcatcgaggacaagcacaaggcgca 338 Query: 375 cctcccggccaacttccgcaagatcatgctgacgcagatcaagaagctggtcgccgccgg 434 ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| Sbjct: 339 cctcccggccaacttccgcaagatcctgctgacccagatcaagaagctcgtcgccgccgg 398 Query: 435 caagctgaccaaggtcaaggcctcctacaagctcgccaaggccccc 480 |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 399 caagctgaccaaggtcaagggctcctacaagctcgccaaggccccc 444 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 91 gccgccgacatcccggtgcctcaggtggagg 121 ||||| ||||||||||||||||||||||||| Sbjct: 88 gccgctgacatcccggtgcctcaggtggagg 118
>gb|AF107022.1|AF107022 Triticum aestivum histone H1 WH1A.1 mRNA, complete cds Length = 1050 Score = 351 bits (177), Expect = 2e-93 Identities = 258/285 (90%) Strand = Plus / Plus Query: 196 gccaaggccgccaagacgcccaaggccaagaagccctccgccccgaggaagcccaaggcc 255 |||||||| ||||| || |||||||||||||| || | | ||||| ||||||| | | Sbjct: 134 gccaaggcgcccaaggcggccaaggccaagaagtccactggcccgaagaagccccgcgtc 193 Query: 256 gcccccgcccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaaggag 315 |||| ||||||||| ||||||| ||||||||||||||||||||| |||| || |||||| Sbjct: 194 accccggcccacccgtcctacgccgagatggtgtcggaggcgatcgccgccctgaaggag 253 Query: 316 aggggcgggtcgagcaccgtcgccatcggcaagttcatcgaggacaagcacaaggcgcac 375 ||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct: 254 aggagcgggtcgagcaccatcgcgatcggcaagttcatcgaggacaagcacaaggcgcac 313 Query: 376 ctcccggccaacttccgcaagatcatgctgacgcagatcaagaagctggtcgccgccggc 435 |||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| Sbjct: 314 ctcccggccaacttccgcaagatcctgctgacccagatcaagaagctcgtcgccgccggc 373 Query: 436 aagctgaccaaggtcaaggcctcctacaagctcgccaaggccccc 480 ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 374 aagctgaccaaggtcaagggctcctacaagctcgccaaggccccc 418 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 91 gccgccgacatcccggtgcctcaggtggagg 121 ||||| ||||||||||||||||||||||||| Sbjct: 65 gccgctgacatcccggtgcctcaggtggagg 95
>gb|AF107023.1|AF107023 Triticum aestivum histone H1 WH1A.2 mRNA, complete cds Length = 1019 Score = 345 bits (174), Expect = 1e-91 Identities = 258/286 (90%) Strand = Plus / Plus Query: 195 ggccaaggccgccaagacgcccaaggccaagaagccctccgccccgaggaagcccaaggc 254 ||||||||| ||||| || |||||||||||||| || | | ||||| ||||||| | Sbjct: 125 ggccaaggcgcccaaggcggccaaggccaagaagtccactggcccgaagaagccccgcgt 184 Query: 255 cgcccccgcccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaagga 314 | |||| ||||||||| ||||||| ||||||||||||||||||||| |||| || ||||| Sbjct: 185 caccccggcccacccgtcctacgccgagatggtgtcggaggcgatcgccgccctgaagga 244 Query: 315 gaggggcgggtcgagcaccgtcgccatcggcaagttcatcgaggacaagcacaaggcgca 374 |||| |||||||||||||| |||| |||||||||||||||||||| |||||||||||||| Sbjct: 245 gaggagcgggtcgagcaccatcgcgatcggcaagttcatcgaggataagcacaaggcgca 304 Query: 375 cctcccggccaacttccgcaagatcatgctgacgcagatcaagaagctggtcgccgccgg 434 ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| Sbjct: 305 cctcccggccaacttccgcaagatcctgctgacccagatcaagaagctcgtcgccgccgg 364 Query: 435 caagctgaccaaggtcaaggcctcctacaagctcgccaaggccccc 480 |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 365 caagctgaccaaggtcaagggctcctacaagctcgccaaggccccc 410 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 97 gacatcccggtgcctcaggtggagg 121 ||||||||||||||||||||||||| Sbjct: 60 gacatcccggtgcctcaggtggagg 84
>gb|AF107027.1|AF107027 Triticum aestivum histone H1 WH1A.4 mRNA, complete cds Length = 975 Score = 313 bits (158), Expect = 4e-82 Identities = 254/286 (88%) Strand = Plus / Plus Query: 195 ggccaaggccgccaagacgcccaaggccaagaagccctccgccccgaggaagcccaaggc 254 ||||||||| ||||| || |||||||||||||| || | | ||||| ||||||| | Sbjct: 116 ggccaaggcgcccaaggcggccaaggccaagaagtccactggcccgaagaagccccgcgt 175 Query: 255 cgcccccgcccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaagga 314 | |||| ||||||||| ||||||| ||||||||||||||||||||| |||| || ||||| Sbjct: 176 caccccggcccacccgtcctacgccgagatggtgtcggaggcgatcgccgccctgaagga 235 Query: 315 gaggggcgggtcgagcaccgtcgccatcggcaagttcatcgaggacaagcacaaggcgca 374 |||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| Sbjct: 236 gaggagcgggtcgagcaccatcgcgatcggcaagttcatcgaggacaagcacgaggcgca 295 Query: 375 cctcccggccaacttccgcaagatcatgctgacgcagatcaagaagctggtcgccgccgg 434 ||||||||||||||||||||||||| |||| || |||||||||||||| ||||||| || Sbjct: 296 cctcccggccaacttccgcaagatcctgctcacccagatcaagaagctcgtcgccggtgg 355 Query: 435 caagctgaccaaggtcaaggcctcctacaagctcgccaaggccccc 480 |||||||||||||||||||| |||||||||||| |||||||||||| Sbjct: 356 caagctgaccaaggtcaagggctcctacaagctggccaaggccccc 401 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 97 gacatcccggtgcctcaggtggagg 121 ||||||||||||||||||||||||| Sbjct: 51 gacatcccggtgcctcaggtggagg 75
>gb|AF107026.1|AF107026 Triticum aestivum histone H1 WH1A.3 mRNA, partial cds Length = 952 Score = 311 bits (157), Expect = 1e-81 Identities = 253/285 (88%) Strand = Plus / Plus Query: 196 gccaaggccgccaagacgcccaaggccaagaagccctccgccccgaggaagcccaaggcc 255 |||||||| ||||| || |||||||||||||| || | | ||||| ||||||| | | Sbjct: 59 gccaaggcgcccaaggcggccaaggccaagaagtccactggcccgaagaagccccgcgtc 118 Query: 256 gcccccgcccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaaggag 315 |||| ||||||||| ||||||| ||||||||||||||||||||| |||| || |||||| Sbjct: 119 accccggcccacccgtcctacgccgagatggtgtcggaggcgatcgccgccctgaaggag 178 Query: 316 aggggcgggtcgagcaccgtcgccatcggcaagttcatcgaggacaagcacaaggcgcac 375 ||| |||||||||||||| |||| |||| |||||||||||||||||||||||||||||| Sbjct: 179 aggagcgggtcgagcaccatcgcgatcgcaaagttcatcgaggacaagcacaaggcgcac 238 Query: 376 ctcccggccaacttccgcaagatcatgctgacgcagatcaagaagctggtcgccgccggc 435 |||||||||||||||||||||||| |||| || |||||||||||||| |||||||| ||| Sbjct: 239 ctcccggccaacttccgcaagatcctgctcacccagatcaagaagctcgtcgccgctggc 298 Query: 436 aagctgaccaaggtcaaggcctcctacaagctcgccaaggccccc 480 ||||||||||||||||||| |||||||||||| |||||||||||| Sbjct: 299 aagctgaccaaggtcaagggctcctacaagctggccaaggccccc 343 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 cccggtgcctcaggtggagg 121 |||||||||||||||||||| Sbjct: 1 cccggtgcctcaggtggagg 20
>dbj|D87064.1| Triticum aestivum gene for histone H1, complete cds, clone:TH315 Length = 3025 Score = 309 bits (156), Expect = 5e-81 Identities = 189/200 (94%) Strand = Plus / Plus Query: 281 agatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccgtcgcca 340 |||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct: 1192 agatggtgacggaggcgatcgccgcgctgaaggagaggaacgggtcgagcaccgtcgcca 1251 Query: 341 tcggcaagttcatcgaggacaagcacaaggcgcacctcccggccaacttccgcaagatca 400 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1252 tcgccaagtacatcgaggacaagcacaaggcgcacctcccggccaacttccgcaagttca 1311 Query: 401 tgctgacgcagatcaagaagctggtcgccgccggcaagctgaccaaggtcaaggcctcct 460 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 1312 tgctgacgcagatcaagaagctcgtggccgccggcaagctgaccaaggtcaaggcctcct 1371 Query: 461 acaagctcgccaaggccccc 480 |||||||| ||||||||||| Sbjct: 1372 acaagctcaccaaggccccc 1391 Score = 307 bits (155), Expect = 2e-80 Identities = 257/288 (89%), Gaps = 16/288 (5%) Strand = Plus / Plus Query: 9 ctcacccgcatctccctcacctccggcgaaagacacaccagcgcgc-----tcccctcgc 63 ||||| |||||||| ||||| |||||||||| |||||||||||||| ||||||||| Sbjct: 778 ctcacacgcatctctctcac-tccggcgaaa-acacaccagcgcgcccctctcccctcgc 835 Query: 64 tctcccgcagcaatgtcgaccgacgcagc---cgccgacatcccggtgcctcaggtggag 120 | ||||| ||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 836 ttccccgccgcaatgtcgaccgacgccgctgccgccgacatcccggtgcctcaggtggag 895 Query: 121 gcgaccgccgaccccgtcgtggagaccacggctgacgccgccgccggcgacgcgaaaccg 180 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct: 896 gcgaccgccgaccccgtcgtggagaccacggctgacgcgcccgccggcgacgcgaaggcg 955 Query: 181 gccaaggc------gaccaaggccaaggccgccaagacgcccaaggccaagaagccctcc 234 ||||||| | |||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 956 accaaggctaccaaggccaaggccaaggccgccaagacccccaaggcgaagaagccctcc 1015 Query: 235 gccccgaggaagcccaaggccgcccccgcccacccgacctacgctgag 282 ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1016 gccccgaggaagcccaaggccacccccgcccacccgacctacgctgag 1063
>ref|NM_185048.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1371 Score = 135 bits (68), Expect = 2e-28 Identities = 208/252 (82%), Gaps = 2/252 (0%) Strand = Plus / Plus Query: 215 ccaaggccaagaagccctccgccccgaggaagcccaaggccgcccccgcccacccgacct 274 |||||||||||||| || |||| ||||||||| | || || || |||||||| | | Sbjct: 207 ccaaggccaagaaggccgccgcgccgaggaaggcacgctccaccgccacccacccgccgt 266 Query: 275 acgctgagatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccg 334 |||| |||||| | |||||||||||| | |||| ||||||||| |||||||||| | | Sbjct: 267 acgccgagatgatctcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc-cag 325 Query: 335 t-cgccatcggcaagttcatcgaggacaagcacaaggcgcacctcccggccaacttccgc 393 | ||| |||||||||||| |||||||||||||||||| ||||| || ||||||||||| Sbjct: 326 tacgcgatcggcaagttcctcgaggacaagcacaaggaccacctgccatccaacttccgc 385 Query: 394 aagatcatgctgacgcagatcaagaagctggtcgccgccggcaagctgaccaaggtcaag 453 ||| |||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 386 aagcagctgctcgtccagatcaagaagctcgtcgccgccggcaagctgaccaaggtcaag 445 Query: 454 gcctcctacaag 465 |||||||||| Sbjct: 446 aactcctacaag 457
>dbj|AK099211.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072E13, full insert sequence Length = 1328 Score = 135 bits (68), Expect = 2e-28 Identities = 208/252 (82%), Gaps = 2/252 (0%) Strand = Plus / Plus Query: 215 ccaaggccaagaagccctccgccccgaggaagcccaaggccgcccccgcccacccgacct 274 |||||||||||||| || |||| ||||||||| | || || || |||||||| | | Sbjct: 222 ccaaggccaagaaggccgccgcgccgaggaaggcacgctccaccgccacccacccgccgt 281 Query: 275 acgctgagatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccg 334 |||| |||||| | |||||||||||| | |||| ||||||||| |||||||||| | | Sbjct: 282 acgccgagatgatctcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc-cag 340 Query: 335 t-cgccatcggcaagttcatcgaggacaagcacaaggcgcacctcccggccaacttccgc 393 | ||| |||||||||||| |||||||||||||||||| ||||| || ||||||||||| Sbjct: 341 tacgcgatcggcaagttcctcgaggacaagcacaaggaccacctgccatccaacttccgc 400 Query: 394 aagatcatgctgacgcagatcaagaagctggtcgccgccggcaagctgaccaaggtcaag 453 ||| |||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 401 aagcagctgctcgtccagatcaagaagctcgtcgccgccggcaagctgaccaaggtcaag 460 Query: 454 gcctcctacaag 465 |||||||||| Sbjct: 461 aactcctacaag 472
>dbj|AK067840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128M09, full insert sequence Length = 1389 Score = 135 bits (68), Expect = 2e-28 Identities = 208/252 (82%), Gaps = 2/252 (0%) Strand = Plus / Plus Query: 215 ccaaggccaagaagccctccgccccgaggaagcccaaggccgcccccgcccacccgacct 274 |||||||||||||| || |||| ||||||||| | || || || |||||||| | | Sbjct: 222 ccaaggccaagaaggccgccgcgccgaggaaggcacgctccaccgccacccacccgccgt 281 Query: 275 acgctgagatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccg 334 |||| |||||| | |||||||||||| | |||| ||||||||| |||||||||| | | Sbjct: 282 acgccgagatgatctcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc-cag 340 Query: 335 t-cgccatcggcaagttcatcgaggacaagcacaaggcgcacctcccggccaacttccgc 393 | ||| |||||||||||| |||||||||||||||||| ||||| || ||||||||||| Sbjct: 341 tacgcgatcggcaagttcctcgaggacaagcacaaggaccacctgccatccaacttccgc 400 Query: 394 aagatcatgctgacgcagatcaagaagctggtcgccgccggcaagctgaccaaggtcaag 453 ||| |||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 401 aagcagctgctcgtccagatcaagaagctcgtcgccgccggcaagctgaccaaggtcaag 460 Query: 454 gcctcctacaag 465 |||||||||| Sbjct: 461 aactcctacaag 472
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 123 bits (62), Expect = 7e-25 Identities = 151/178 (84%), Gaps = 2/178 (1%) Strand = Plus / Plus Query: 289 tcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccgt-cgccatcggcaa 347 |||||||||||| | |||| ||||||||| |||||||||| | || ||| |||||||| Sbjct: 33000947 tcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc-cagtacgcgatcggcaa 33001005 Query: 348 gttcatcgaggacaagcacaaggcgcacctcccggccaacttccgcaagatcatgctgac 407 |||| |||||||||||||||||| ||||| || |||||||||||||| |||| Sbjct: 33001006 gttcctcgaggacaagcacaaggaccacctgccatccaacttccgcaagcagctgctcgt 33001065 Query: 408 gcagatcaagaagctggtcgccgccggcaagctgaccaaggtcaaggcctcctacaag 465 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct: 33001066 ccagatcaagaagctcgtcgccgccggcaagctgaccaaggtcaagaactcctacaag 33001123 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 215 ccaaggccaagaagccctccgccccgaggaag 246 |||||||||||||| || |||| ||||||||| Sbjct: 33000793 ccaaggccaagaaggccgccgcgccgaggaag 33000824
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 123 bits (62), Expect = 7e-25 Identities = 151/178 (84%), Gaps = 2/178 (1%) Strand = Plus / Plus Query: 289 tcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccgt-cgccatcggcaa 347 |||||||||||| | |||| ||||||||| |||||||||| | || ||| |||||||| Sbjct: 33091457 tcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc-cagtacgcgatcggcaa 33091515 Query: 348 gttcatcgaggacaagcacaaggcgcacctcccggccaacttccgcaagatcatgctgac 407 |||| |||||||||||||||||| ||||| || |||||||||||||| |||| Sbjct: 33091516 gttcctcgaggacaagcacaaggaccacctgccatccaacttccgcaagcagctgctcgt 33091575 Query: 408 gcagatcaagaagctggtcgccgccggcaagctgaccaaggtcaaggcctcctacaag 465 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct: 33091576 ccagatcaagaagctcgtcgccgccggcaagctgaccaaggtcaagaactcctacaag 33091633 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 215 ccaaggccaagaagccctccgccccgaggaag 246 |||||||||||||| || |||| ||||||||| Sbjct: 33091303 ccaaggccaagaaggccgccgcgccgaggaag 33091334
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 123 bits (62), Expect = 7e-25 Identities = 151/178 (84%), Gaps = 2/178 (1%) Strand = Plus / Minus Query: 289 tcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccgt-cgccatcggcaa 347 |||||||||||| | |||| ||||||||| |||||||||| | || ||| |||||||| Sbjct: 122361 tcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc-cagtacgcgatcggcaa 122303 Query: 348 gttcatcgaggacaagcacaaggcgcacctcccggccaacttccgcaagatcatgctgac 407 |||| |||||||||||||||||| ||||| || |||||||||||||| |||| Sbjct: 122302 gttcctcgaggacaagcacaaggaccacctgccatccaacttccgcaagcagctgctcgt 122243 Query: 408 gcagatcaagaagctggtcgccgccggcaagctgaccaaggtcaaggcctcctacaag 465 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct: 122242 ccagatcaagaagctcgtcgccgccggcaagctgaccaaggtcaagaactcctacaag 122185 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 215 ccaaggccaagaagccctccgccccgaggaag 246 |||||||||||||| || |||| ||||||||| Sbjct: 122515 ccaaggccaagaaggccgccgcgccgaggaag 122484
>gb|BT016684.1| Zea mays clone Contig517 mRNA sequence Length = 1070 Score = 105 bits (53), Expect = 2e-19 Identities = 167/205 (81%) Strand = Plus / Plus Query: 263 cccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaaggagaggggcg 322 |||||||| | ||||| |||||||| |||||||||||||| |||||||||||||| | Sbjct: 233 cccacccgccgtacgccgagatggtctcggaggcgatcacgtcgctcaaggagaggacgg 292 Query: 323 ggtcgagcaccgtcgccatcggcaagttcatcgaggacaagcacaaggcgcacctcccgg 382 |||| |||| | ||| || | ||||||| | ||||||||||||||||| | |||||| Sbjct: 293 ggtccagcagctacgcgattgccaagttcgtggaggacaagcacaaggccaagctcccgc 352 Query: 383 ccaacttccgcaagatcatgctgacgcagatcaagaagctggtcgccgccggcaagctga 442 |||||||||||||| | || ||| |||||||||| ||||||| ||||||||||| Sbjct: 353 ccaacttccgcaagcttctgaacgttcagctcaagaagctcgtcgccggcggcaagctga 412 Query: 443 ccaaggtcaaggcctcctacaagct 467 ||||||| ||| ||| |||||||| Sbjct: 413 ccaaggtgaagaactcgtacaagct 437
>emb|X57077.1|ZMH1HIS Maize H1 mRNA for H1 histone Length = 1075 Score = 99.6 bits (50), Expect = 1e-17 Identities = 158/194 (81%) Strand = Plus / Plus Query: 274 tacgctgagatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcacc 333 ||||| |||||||| |||||||||||||| |||||||||||||| ||||| |||| | Sbjct: 176 tacgccgagatggtctcggaggcgatcacgtcgctcaaggagaggacggggtccagcagc 235 Query: 334 gtcgccatcggcaagttcatcgaggacaagcacaaggcgcacctcccggccaacttccgc 393 ||| || | ||||||| | ||||||||||||||||| | |||||| ||||||||||| Sbjct: 236 tacgcgattgccaagttcgtggaggacaagcacaaggccaagctcccgcccaacttccgc 295 Query: 394 aagatcatgctgacgcagatcaagaagctggtcgccgccggcaagctgaccaaggtcaag 453 ||| | || ||| |||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 296 aagcttctgaacgttcagctcaagaagctcgtcgccggcggcaagctgaccaaggtgaag 355 Query: 454 gcctcctacaagct 467 ||| |||||||| Sbjct: 356 aactcgtacaagct 369
>gb|BT016422.1| Zea mays clone Contig255 mRNA sequence Length = 1248 Score = 95.6 bits (48), Expect = 2e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 340 atcggcaagttcatcgaggacaagcacaaggcgcacctcccggccaacttccgcaagatc 399 |||| ||||||| |||||||||||||||||| | |||||| |||||||||||||| || Sbjct: 303 atcgccaagttcgtcgaggacaagcacaaggacaagctcccgcccaacttccgcaagctc 362 Query: 400 atgctgacgcagatcaagaagctggtcgccgccggcaagctgaccaaggtcaaggcctcc 459 |||| ||| |||||||||| ||||||| ||||||||| |||||||| ||| |||| Sbjct: 363 ctgctcggccagctcaagaagctcgtcgccggcggcaagctcaccaaggtgaagaactcc 422 Query: 460 tacaagct 467 |||||||| Sbjct: 423 tacaagct 430
>gb|AY103607.1| Zea mays PCO078239 mRNA sequence Length = 1228 Score = 89.7 bits (45), Expect = 9e-15 Identities = 165/205 (80%) Strand = Plus / Plus Query: 263 cccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaaggagaggggcg 322 |||||||| | ||||| |||||||| |||||||||||||| |||||||||||||| | Sbjct: 234 cccacccgccgtacgccgagatggtctcggaggcgatcacgtcgctcaaggagaggacgg 293 Query: 323 ggtcgagcaccgtcgccatcggcaagttcatcgaggacaagcacaaggcgcacctcccgg 382 |||| |||| | || || | ||||||| | |||||||||||||||| | |||||| Sbjct: 294 ggtccagcagctatgcgattgccaagttcgtggaggacaagcacaaggacaagctcccgc 353 Query: 383 ccaacttccgcaagatcatgctgacgcagatcaagaagctggtcgccgccggcaagctga 442 |||||||||||||| | || ||| |||||||||| ||||||| ||||||||||| Sbjct: 354 ccaacttccgcaagcttctgaacgttcagctcaagaagctcgtcgccggcggcaagctga 413 Query: 443 ccaaggtcaaggcctcctacaagct 467 ||||||| ||| ||| |||||||| Sbjct: 414 ccaaggtgaagaactcgtacaagct 438
>gb|BT018112.1| Zea mays clone EL01N0553G06.c mRNA sequence Length = 1005 Score = 83.8 bits (42), Expect = 6e-13 Identities = 156/194 (80%) Strand = Plus / Plus Query: 274 tacgctgagatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcacc 333 ||||| |||||||| |||||||||||| | |||||||||||||| ||||| |||| | Sbjct: 237 tacgccgagatggtctcggaggcgatcgcgtcgctcaaggagaggacggggtccagcagc 296 Query: 334 gtcgccatcggcaagttcatcgaggacaagcacaaggcgcacctcccggccaacttccgc 393 | || || | ||||||| | |||||||||||||||| | |||||| ||||||||||| Sbjct: 297 tttgctattgccaagttcttggaggacaagcacaaggacaagctcccgcccaacttccgc 356 Query: 394 aagatcatgctgacgcagatcaagaagctggtcgccgccggcaagctgaccaaggtcaag 453 ||| | || ||| |||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 357 aagcttctgaacgttcagctcaagaagctcgtcgccggcggcaagctgaccaaggtgaag 416 Query: 454 gcctcctacaagct 467 ||| |||||||| Sbjct: 417 aactcgtacaagct 430
>ref|XM_476900.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1174 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 413 tcaagaagctggtcgccgccggcaagctgaccaaggtcaaggcctcctacaagctc 468 |||||||||| |||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 481 tcaagaagctcaccgccgccggcaagctggccaaggtcaagaactccttcaagctc 536 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 aagcccaaggccgcccccgcc 264 ||||||||||||||||||||| Sbjct: 576 aagcccaaggccgcccccgcc 596
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 413 tcaagaagctggtcgccgccggcaagctgaccaaggtcaaggcctcctacaagctc 468 |||||||||| |||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 4516215 tcaagaagctcaccgccgccggcaagctggccaaggtcaagaactccttcaagctc 4516270 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 154 gacgccgccgccggcgacgcga 175 |||||||||||||||||||||| Sbjct: 21849139 gacgccgccgccggcgacgcga 21849160 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 aagcccaaggccgcccccgcc 264 ||||||||||||||||||||| Sbjct: 4516310 aagcccaaggccgcccccgcc 4516330
>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1046_F10 Length = 118472 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 413 tcaagaagctggtcgccgccggcaagctgaccaaggtcaaggcctcctacaagctc 468 |||||||||| |||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 94934 tcaagaagctcaccgccgccggcaagctggccaaggtcaagaactccttcaagctc 94989 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 aagcccaaggccgcccccgcc 264 ||||||||||||||||||||| Sbjct: 95029 aagcccaaggccgcccccgcc 95049
>dbj|AK106132.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F12, full insert sequence Length = 1174 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 413 tcaagaagctggtcgccgccggcaagctgaccaaggtcaaggcctcctacaagctc 468 |||||||||| |||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 481 tcaagaagctcaccgccgccggcaagctggccaaggtcaagaactccttcaagctc 536 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 aagcccaaggccgcccccgcc 264 ||||||||||||||||||||| Sbjct: 576 aagcccaaggccgcccccgcc 596
>dbj|AK102642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033100F04, full insert sequence Length = 1175 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 413 tcaagaagctggtcgccgccggcaagctgaccaaggtcaaggcctcctacaagctc 468 |||||||||| |||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 482 tcaagaagctcaccgccgccggcaagctggccaaggtcaagaactccttcaagctc 537 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 aagcccaaggccgcccccgcc 264 ||||||||||||||||||||| Sbjct: 577 aagcccaaggccgcccccgcc 597
>dbj|AK099050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148D20, full insert sequence Length = 1175 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 413 tcaagaagctggtcgccgccggcaagctgaccaaggtcaaggcctcctacaagctc 468 |||||||||| |||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 482 tcaagaagctcaccgccgccggcaagctggccaaggtcaagaactccttcaagctc 537 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 aagcccaaggccgcccccgcc 264 ||||||||||||||||||||| Sbjct: 577 aagcccaaggccgcccccgcc 597
>dbj|AK059544.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F03, full insert sequence Length = 1177 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 413 tcaagaagctggtcgccgccggcaagctgaccaaggtcaaggcctcctacaagctc 468 |||||||||| |||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 484 tcaagaagctcaccgccgccggcaagctggccaaggtcaagaactccttcaagctc 539 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 aagcccaaggccgcccccgcc 264 ||||||||||||||||||||| Sbjct: 579 aagcccaaggccgcccccgcc 599
>gb|AY109570.1| Zea mays CL1864_2 mRNA sequence Length = 1002 Score = 48.1 bits (24), Expect = 0.032 Identities = 27/28 (96%) Strand = Plus / Minus Query: 444 caaggtcaaggcctcctacaagctcgcc 471 ||||||||||||||||| |||||||||| Sbjct: 515 caaggtcaaggcctccttcaagctcgcc 488
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 328 agcaccgtcgccatcggcaagttcatcgagga 359 |||| ||||| ||||||||||||||||||||| Sbjct: 2343088 agcaacgtcggcatcggcaagttcatcgagga 2343119 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gcaccgtcgccatcggcaag 348 |||||||||||||||||||| Sbjct: 2067784 gcaccgtcgccatcggcaag 2067765
>gb|AF315800.1|AF315800 Homo sapiens chromosome 11 AHCP pseudogene, complete sequence Length = 5386 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 237 cccgaggaagcccaaggccgccc 259 ||||||||||||||||||||||| Sbjct: 752 cccgaggaagcccaaggccgccc 774
>gb|AC022882.5|AC022882 Homo sapiens chromosome 11, clone RP11-444K7, complete sequence Length = 174469 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 237 cccgaggaagcccaaggccgccc 259 ||||||||||||||||||||||| Sbjct: 143225 cccgaggaagcccaaggccgccc 143203
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 180 ggccaaggcgaccaaggccaag 201 |||||||||||||||||||||| Sbjct: 2404461 ggccaaggcgaccaaggccaag 2404482
>ref|XM_478655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2655 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 154 gacgccgccgccggcgacgcga 175 |||||||||||||||||||||| Sbjct: 1580 gacgccgccgccggcgacgcga 1559
>ref|XM_475081.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 522 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 178 ccggccaaggcgaccaaggccaaggccgccaagacgcccaag 219 |||||||||||| |||||| ||| ||||||||| | |||||| Sbjct: 463 ccggccaaggcgtccaaggacaaagccgccaagtcccccaag 504
>gb|AY325530.1| Uncultured bacterium clone GA1 putative dissimilatory membrane-bound nitrate reductase (narG) gene, partial cds Length = 655 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 160 gccgccggcgacgcgaaaccgg 181 |||||||||||||||||||||| Sbjct: 505 gccgccggcgacgcgaaaccgg 526
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Minus Query: 181 gccaaggcgaccaaggccaaggccgccaag 210 |||||||| |||||||| |||||||||||| Sbjct: 1156545 gccaaggccaccaaggcgaaggccgccaag 1156516
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 190 accaaggccaaggccgccaaga 211 |||||||||||||||||||||| Sbjct: 234945 accaaggccaaggccgccaaga 234966 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 416 agaagctggtcgccgccggcaagctgaccaagg 448 |||||| |||||| ||||||||||| ||||||| Sbjct: 318532 agaagcaggtcgcggccggcaagctcaccaagg 318500 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 287 tgtcggaggcgatcaccgcgc 307 ||||||||||||||||||||| Sbjct: 308181 tgtcggaggcgatcaccgcgc 308161
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 148 acggctgacgccgccgccggcgacgc 173 ||||||||||||||||||| |||||| Sbjct: 75639 acggctgacgccgccgccgccgacgc 75614
>gb|AY641409.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra2, complete sequence Length = 8027 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 48 agcgcgctcccctcgctctccc 69 |||||||||||||||||||||| Sbjct: 4665 agcgcgctcccctcgctctccc 4686
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 148 acggctgacgccgccgccggcgacgc 173 ||||||||||||||||||| |||||| Sbjct: 24078660 acggctgacgccgccgccgccgacgc 24078635 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 444 caaggtcaaggcctcctacaagctc 468 |||||| |||||||||||||||||| Sbjct: 10046445 caaggttaaggcctcctacaagctc 10046469 Score = 40.1 bits (20), Expect = 7.9 Identities = 62/76 (81%) Strand = Plus / Plus Query: 291 ggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccgtcgccatcggcaagtt 350 |||||||||||| | ||| ||||||||| ||| |||||| | |||||||| ||||| Sbjct: 10046292 ggaggcgatcacggtgcttaaggagaggaccggctcgagcgcgcacgccatcgccaagta 10046351 Query: 351 catcgaggacaagcac 366 ||| ||||| |||||| Sbjct: 10046352 catggaggagaagcac 10046367
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 178 ccggccaaggcgaccaaggccaaggccgccaagacgcccaag 219 |||||||||||| |||||| ||| ||||||||| | |||||| Sbjct: 707426 ccggccaaggcgtccaaggacaaagccgccaagtcccccaag 707467
>dbj|AB012694.1| Lilium longiflorum p35 mRNA for variant of histone H1, complete cds Length = 980 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 361 aagcacaaggcgcacctcccggccaacttc 390 ||||||||||| ||||| |||||||||||| Sbjct: 280 aagcacaaggctcacctgccggccaacttc 309
>dbj|AK074018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075N03, full insert sequence Length = 797 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 178 ccggccaaggcgaccaaggccaaggccgccaagacgcccaag 219 |||||||||||| |||||| ||| ||||||||| | |||||| Sbjct: 489 ccggccaaggcgtccaaggacaaagccgccaagtcccccaag 530
>dbj|AK064801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D08, full insert sequence Length = 1032 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 148 acggctgacgccgccgccggcgacgc 173 ||||||||||||||||||| |||||| Sbjct: 637 acggctgacgccgccgccgccgacgc 662
>dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0041B22 Length = 142446 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 154 gacgccgccgccggcgacgcga 175 |||||||||||||||||||||| Sbjct: 62815 gacgccgccgccggcgacgcga 62836
>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete sequence Length = 90767 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 148 acggctgacgccgccgccggcgacgc 173 ||||||||||||||||||| |||||| Sbjct: 70727 acggctgacgccgccgccgccgacgc 70702
>emb|Z99972.1|MAZ99972 Musa acuminata mRNA for putative histine H1 (clone pBAN ED88) Length = 729 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 340 atcggcaagttcatcgaggacaagcacaag 369 ||||| |||||| ||||||||||||||||| Sbjct: 349 atcgggaagttcctcgaggacaagcacaag 378
>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome Length = 1197687 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 339 catcggcaagttcatcgaggacaagc 364 ||||||||||||||||||| |||||| Sbjct: 311468 catcggcaagttcatcgagaacaagc 311443
>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0041A22, complete sequence Length = 117919 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 178 ccggccaaggcgaccaaggccaaggccgccaagacgcccaag 219 |||||||||||| |||||| ||| ||||||||| | |||||| Sbjct: 52625 ccggccaaggcgtccaaggacaaagccgccaagtcccccaag 52666
>ref|XM_513878.1| PREDICTED: Pan troglodytes LOC457388 (LOC457388), mRNA Length = 689 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 156 agaagctggtcgccgccggca 176
>ref|XM_471321.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 567 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 444 caaggtcaaggcctcctacaagctc 468 |||||| |||||||||||||||||| Sbjct: 270 caaggttaaggcctcctacaagctc 294 Score = 40.1 bits (20), Expect = 7.9 Identities = 62/76 (81%) Strand = Plus / Plus Query: 291 ggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccgtcgccatcggcaagtt 350 |||||||||||| | ||| ||||||||| ||| |||||| | |||||||| ||||| Sbjct: 117 ggaggcgatcacggtgcttaaggagaggaccggctcgagcgcgcacgccatcgccaagta 176 Query: 351 catcgaggacaagcac 366 ||| ||||| |||||| Sbjct: 177 catggaggagaagcac 192
>gb|DQ149977.1| Capra hircus polyamine-modulated factor 1 mRNA, partial cds Length = 219 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 6 agaagctggtcgccgccggca 26
>emb|AL135927.14| Human DNA sequence from clone RP11-54H19 on chromosome 1 Contains the 3' end of the LMNA gene for lamin A/C, the gene for a novel protein similar to semaphorins (FLJ12287), a novel gene (KIAA0446), the PMF1 gene for polyamine-modulated factor 1, the BGLAP gene for bone gamma-carboxyglutamate (gla) protein (osteocalcin), the gene for progestin and adipoQ receptor family member VI (PAQR6) and the 3' end of the gene for Est1p-like protein B (EST1B), complete sequence Length = 164168 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 100843 agaagctggtcgccgccggca 100863
>gb|BC056417.1| Homo sapiens polyamine-modulated factor 1, mRNA (cDNA clone IMAGE:5760174), partial cds Length = 1091 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 132 agaagctggtcgccgccggca 152
>gb|BC033656.2| Homo sapiens polyamine-modulated factor 1, mRNA (cDNA clone MGC:45179 IMAGE:3909927), complete cds Length = 820 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 158 agaagctggtcgccgccggca 178
>gb|AY223810.1| Rhodococcus erythropolis linear plasmid pBD2, complete sequence Length = 210205 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 caccgtcgccatcggcaagtt 350 ||||||||||||||||||||| Sbjct: 118390 caccgtcgccatcggcaagtt 118370
>gb|BC050735.1| Homo sapiens polyamine-modulated factor 1, mRNA (cDNA clone IMAGE:6067207), partial cds Length = 1050 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 123 agaagctggtcgccgccggca 143
>gb|BC065031.1| Homo sapiens polyamine-modulated factor 1, mRNA (cDNA clone MGC:75061 IMAGE:6148250), complete cds Length = 1081 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 147 agaagctggtcgccgccggca 167
>emb|AL607007.3|OSJN00118 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018J12, complete sequence Length = 120004 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 444 caaggtcaaggcctcctacaagctc 468 |||||| |||||||||||||||||| Sbjct: 26929 caaggttaaggcctcctacaagctc 26953 Score = 40.1 bits (20), Expect = 7.9 Identities = 62/76 (81%) Strand = Plus / Plus Query: 291 ggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccgtcgccatcggcaagtt 350 |||||||||||| | ||| ||||||||| ||| |||||| | |||||||| ||||| Sbjct: 26776 ggaggcgatcacggtgcttaaggagaggaccggctcgagcgcgcacgccatcgccaagta 26835 Query: 351 catcgaggacaagcac 366 ||| ||||| |||||| Sbjct: 26836 catggaggagaagcac 26851
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 ccaaggccaaggccgccaaga 211 ||||||||||||||||||||| Sbjct: 674712 ccaaggccaaggccgccaaga 674732
>emb|AL080101.1|HSM800604 Homo sapiens mRNA; cDNA DKFZp564L0472 (from clone DKFZp564L0472) Length = 1078 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 138 agaagctggtcgccgccggca 158
>dbj|AK124646.1| Homo sapiens cDNA FLJ42655 fis, clone BRACE3045033, moderately similar to Homo sapiens polyamine-modulated factor 1 (PMF1) Length = 1019 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 163 agaagctggtcgccgccggca 183
>emb|CR616631.1| full-length cDNA clone CS0DI009YK05 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1043 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 130 agaagctggtcgccgccggca 150
>dbj|AK022523.1| Homo sapiens cDNA FLJ12461 fis, clone NT2RM1000746, highly similar to Homo sapiens polyamine modulated factor-1 (PMF1) mRNA Length = 1061 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 150 agaagctggtcgccgccggca 170
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 426 cgccgccggcaagctgaccaa 446 ||||||||||||||||||||| Sbjct: 4128046 cgccgccggcaagctgaccaa 4128026
>ref|NM_007221.2| Homo sapiens polyamine-modulated factor 1 (PMF1), mRNA Length = 1082 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 163 agaagctggtcgccgccggca 183
>gb|AF394115.1|AF394115 Fritillaria liliacea clone 1GA-4 histone-like protein gene, partial cds Length = 827 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 172 gcgaaaccggccaaggcgaccaaggccaaggcc 204 ||||| |||||||||| ||| |||||||||||| Sbjct: 43 gcgaagccggccaaggtgacgaaggccaaggcc 75
>gb|AF394114.1|AF394114 Fritillaria liliacea clone 1GA-3 histone-like protein gene, partial cds Length = 827 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 172 gcgaaaccggccaaggcgaccaaggccaaggcc 204 ||||| |||||||||| ||| |||||||||||| Sbjct: 43 gcgaagccggccaaggtgacgaaggccaaggcc 75
>gb|AF394113.1|AF394113 Fritillaria liliacea clone 1GA-2 histone-like protein gene, partial cds Length = 827 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 172 gcgaaaccggccaaggcgaccaaggccaaggcc 204 ||||| |||||||||| ||| |||||||||||| Sbjct: 43 gcgaagccggccaaggtgacgaaggccaaggcc 75
>gb|AF394112.1|AF394112 Fritillaria liliacea clone 1GA-1 histone-like protein gene, partial cds Length = 827 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 172 gcgaaaccggccaaggcgaccaaggccaaggcc 204 ||||| |||||||||| ||| |||||||||||| Sbjct: 43 gcgaagccggccaaggtgacgaaggccaaggcc 75
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 418 aagctggtcgccgccggcaag 438 ||||||||||||||||||||| Sbjct: 1931377 aagctggtcgccgccggcaag 1931357
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggcaagctgaccaagg 448 |||||| ||||| ||||||||||||||||||| Sbjct: 1501693 agaagcaggtcgatgccggcaagctgaccaagg 1501725 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggc 435 |||||||||||||||||||| Sbjct: 3233876 agaagctggtcgccgccggc 3233895 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gtcggaggcgatcaccgcgc 307 |||||||||||||||||||| Sbjct: 994618 gtcggaggcgatcaccgcgc 994637
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 gacgccgccgccggcgacgcg 174 ||||||||||||||||||||| Sbjct: 20910779 gacgccgccgccggcgacgcg 20910799
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 197 ccaaggccgccaagacgcccaaggc 221 |||||||||||||| |||||||||| Sbjct: 2170881 ccaaggccgccaaggcgcccaaggc 2170857
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 ggtcgccgccggcaagctgac 443 ||||||||||||||||||||| Sbjct: 4785128 ggtcgccgccggcaagctgac 4785108
>gb|AY893016.1| Synthetic construct Homo sapiens clone FLH119583.01L polyamine-modulated factor 1 (PMF1) mRNA, partial cds Length = 528 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 140 agaagctggtcgccgccggca 160
>gb|AY890548.1| Synthetic construct Homo sapiens clone FLH119587.01X polyamine-modulated factor 1 (PMF1) mRNA, complete cds Length = 528 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 140 agaagctggtcgccgccggca 160
>gb|AC007227.3|AC007227 Homo sapiens chromosome 1 clone RPCI-11_54H19, complete sequence Length = 164179 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 63327 agaagctggtcgccgccggca 63307
>ref|XM_309316.2| Anopheles gambiae str. PEST ENSANGP00000025395 (ENSANGG00000006187), partial mRNA Length = 4845 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 321 cgggtcgagcaccgtcgccatcggc 345 |||||||||||| |||||||||||| Sbjct: 942 cgggtcgagcacggtcgccatcggc 918
>dbj|AK073668.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052L06, full insert sequence Length = 891 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 444 caaggtcaaggcctcctacaagctc 468 |||||| |||||||||||||||||| Sbjct: 361 caaggttaaggcctcctacaagctc 385 Score = 40.1 bits (20), Expect = 7.9 Identities = 62/76 (81%) Strand = Plus / Plus Query: 291 ggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccgtcgccatcggcaagtt 350 |||||||||||| | ||| ||||||||| ||| |||||| | |||||||| ||||| Sbjct: 208 ggaggcgatcacggtgcttaaggagaggaccggctcgagcgcgcacgccatcgccaagta 267 Query: 351 catcgaggacaagcac 366 ||| ||||| |||||| Sbjct: 268 catggaggagaagcac 283
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 418 aagctggtcgccgccggcaag 438 ||||||||||||||||||||| Sbjct: 1047307 aagctggtcgccgccggcaag 1047327
>gb|AF141310.1|AF141310 Homo sapiens polyamine modulated factor-1 (PMF1) mRNA, complete cds Length = 1057 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 131 agaagctggtcgccgccggca 151
>gb|AF141308.1|HSPMFG1 Homo sapiens polyamine modulated factor-1 (PMF1) gene, exon 1 Length = 17160 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agaagctggtcgccgccggca 436 ||||||||||||||||||||| Sbjct: 11347 agaagctggtcgccgccggca 11367
>gb|AF099746.1|AF099746 Petromyzon marinus Otx mRNA, complete cds Length = 2456 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 ccacggctgacgccgccgccg 166 ||||||||||||||||||||| Sbjct: 1308 ccacggctgacgccgccgccg 1328
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 415 aagaagctggtcgccgccggc 435 ||||||||||||||||||||| Sbjct: 116210 aagaagctggtcgccgccggc 116190
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 gacgccgccgccggcgacgcg 174 ||||||||||||||||||||| Sbjct: 20836993 gacgccgccgccggcgacgcg 20837013
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 tgacgccgccgccggcgacgc 173 ||||||||||||||||||||| Sbjct: 6894956 tgacgccgccgccggcgacgc 6894976 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 aagctggtcgccgccggcaa 437 |||||||||||||||||||| Sbjct: 6403448 aagctggtcgccgccggcaa 6403467
>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 107819 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 gacgccgccgccggcgacgcg 174 ||||||||||||||||||||| Sbjct: 48216 gacgccgccgccggcgacgcg 48196
>gb|AF527615.1| Zea mays histone H1-like protein HON101 (hon101) mRNA, complete cds Length = 780 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 291 ggaggcgatcaccgcgctcaaggagagg 318 |||||| ||||| ||||||||||||||| Sbjct: 215 ggaggctatcacggcgctcaaggagagg 242
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 414 caagaagctggtcgccgccggcaagctg 441 ||||||| |||||||||||| ||||||| Sbjct: 2411760 caagaagatggtcgccgccgccaagctg 2411787
>ref|XM_367399.1| Magnaporthe grisea 70-15 hypothetical protein (MG07324.4) partial mRNA Length = 702 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 agacgcccaaggccaagaag 228 |||||||||||||||||||| Sbjct: 677 agacgcccaaggccaagaag 696
>ref|XM_959500.1| Neurospora crassa OR74A hypothetical protein (NCU02066.1) partial mRNA Length = 2373 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 caagttcatcgaggacaagc 364 |||||||||||||||||||| Sbjct: 2013 caagttcatcgaggacaagc 2032
>ref|XM_329255.1| Neurospora crassa OR74A hypothetical protein (NCU02066.1) partial mRNA Length = 2373 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 caagttcatcgaggacaagc 364 |||||||||||||||||||| Sbjct: 2013 caagttcatcgaggacaagc 2032
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 agctggtcgccgccggcaag 438 |||||||||||||||||||| Sbjct: 3530123 agctggtcgccgccggcaag 3530142 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 tggaggcgaccgccgaccccgtcg 139 ||||||||||||||||| |||||| Sbjct: 571059 tggaggcgaccgccgacgccgtcg 571036
>ref|XM_504483.1| Yarrowia lipolytica CLIB122, YALI0E27808g predicted mRNA Length = 1224 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 cagatcaagaagctggtcgccgcc 432 ||||||||||||||| |||||||| Sbjct: 277 cagatcaagaagctgatcgccgcc 300
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 gtcggaggcgatcaccgcgc 307 |||||||||||||||||||| Sbjct: 4334445 gtcggaggcgatcaccgcgc 4334426 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 agaagctggtcgccgccggc 435 |||||||||||||||||||| Sbjct: 2952533 agaagctggtcgccgccggc 2952514 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gtcggaggcgatcaccgcgc 307 |||||||||||||||||||| Sbjct: 1105481 gtcggaggcgatcaccgcgc 1105500
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 443 ccaaggtcaaggcctcctacaagc 466 |||||||||||||| ||||||||| Sbjct: 259492 ccaaggtcaaggccgcctacaagc 259469
>emb|AJ496594.1|PST496594 Pseudomonas stutzeri partial rpoN operon, strain A15101 Length = 8072 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 atcaagaagctggtcgccgc 431 |||||||||||||||||||| Sbjct: 5593 atcaagaagctggtcgccgc 5612
>emb|AJ223088.1|PSS223088 Pseudomonas stutzeri mRNA for sigma-54, ORF102, ORF120 and ORF241 Length = 3321 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 atcaagaagctggtcgccgc 431 |||||||||||||||||||| Sbjct: 2408 atcaagaagctggtcgccgc 2427
>gb|AE005742.1| Caulobacter crescentus CB15 section 68 of 359 of the complete genome Length = 12842 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ccaaggccaaggccgccaag 210 |||||||||||||||||||| Sbjct: 1622 ccaaggccaaggccgccaag 1603
>gb|AE012093.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 1 of 460 of the complete genome Length = 10511 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 201 ggccgccaagacgcccaaggccaagaag 228 |||||||||||||||||| | ||||||| Sbjct: 9931 ggccgccaagacgcccaacgacaagaag 9958
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 caaggccaaggccgccaaga 211 |||||||||||||||||||| Sbjct: 495144 caaggccaaggccgccaaga 495125
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ccaaggccaaggccgccaag 210 |||||||||||||||||||| Sbjct: 2803702 ccaaggccaaggccgccaag 2803721
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 201 ggccgccaagacgcccaaggccaagaag 228 |||||||||||||||||| | ||||||| Sbjct: 9931 ggccgccaagacgcccaacgacaagaag 9958
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ctgacgccgccgccggcgac 171 |||||||||||||||||||| Sbjct: 5647823 ctgacgccgccgccggcgac 5647842
>gb|AF527951.1| Xanthomonas campestris pv. campestris conserved hypothetical protein (orf268), conserved hypothetical protein (orf398), TonB (tonB), ExbB (exbB), ExbD1 (exbD1), and ExbD2 (exbD2) genes, complete cds Length = 4981 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 201 ggccgccaagacgcccaaggccaagaag 228 |||||||||||||||||| | ||||||| Sbjct: 1797 ggccgccaagacgcccaacgacaagaag 1824
>gb|AC139530.3| Homo sapiens chromosome 17, clone RP13-1032I1, complete sequence Length = 159125 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 cagccgccgacatcccggtgcctc 112 ||||||||||| |||||||||||| Sbjct: 92612 cagccgccgacgtcccggtgcctc 92589
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 179 cggccaaggcgaccaaggccaaggccgccaagacgcccaaggcc 222 |||||| |||| ||||||||| ||| ||||| ||||||||||| Sbjct: 2482592 cggccacggcgtccaaggccagggcgtccaaggcgcccaaggcc 2482549 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 tgacgccgccgccggcgacg 172 |||||||||||||||||||| Sbjct: 2470338 tgacgccgccgccggcgacg 2470357
>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0021C04 Length = 162115 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ctgacgccgccgccggcgac 171 |||||||||||||||||||| Sbjct: 39970 ctgacgccgccgccggcgac 39989
>gb|AE005040.1| Halobacterium sp. NRC-1 section 71 of 170 of the complete genome Length = 10881 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gcgaccgccgaccccgtcgt 140 |||||||||||||||||||| Sbjct: 7444 gcgaccgccgaccccgtcgt 7425
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 ggctgacgccgccgccggcg 169 |||||||||||||||||||| Sbjct: 136448 ggctgacgccgccgccggcg 136467
>gb|AY849653.1| Magnaporthe grisea microsomal signal peptidase-like protein mRNA, complete cds Length = 1061 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 agacgcccaaggccaagaag 228 |||||||||||||||||||| Sbjct: 806 agacgcccaaggccaagaag 825
>gb|AY104249.1| Zea mays PCO063043 mRNA sequence Length = 942 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 291 ggaggcgatcaccgcgctcaaggagagg 318 |||||| ||||| ||||||||||||||| Sbjct: 229 ggaggctatcacggcgctcaaggagagg 256
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ggtggaggcgaccgccgacc 133 |||||||||||||||||||| Sbjct: 1411771 ggtggaggcgaccgccgacc 1411790
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 409 cagatcaagaagctggtcgccgcc 432 ||||||||||||||| |||||||| Sbjct: 3287154 cagatcaagaagctgatcgccgcc 3287131
>gb|L43630.1|LEISA2R Leishmania major surface antigen 2 mRNA, complete cds Length = 1186 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 catcgaggacaagcacaagg 370 |||||||||||||||||||| Sbjct: 733 catcgaggacaagcacaagg 752
>emb|X56810.1|LMSAP264 L.major mRNA for surface antigen P2 (clone 6.4) Length = 2529 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 catcgaggacaagcacaagg 370 |||||||||||||||||||| Sbjct: 249 catcgaggacaagcacaagg 268
>emb|X57009.1|LMTR1 L.major tr-1 gene for surface antigen P2 Length = 1360 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 catcgaggacaagcacaagg 370 |||||||||||||||||||| Sbjct: 907 catcgaggacaagcacaagg 926 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,583,565 Number of Sequences: 3902068 Number of extensions: 3583565 Number of successful extensions: 89966 Number of sequences better than 10.0: 118 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84909 Number of HSP's gapped (non-prelim): 5035 length of query: 579 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 556 effective length of database: 17,143,297,704 effective search space: 9531673523424 effective search space used: 9531673523424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
