ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart36c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 46 0.12
2emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome... 46 0.12
3emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 46 0.12
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
5dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
6gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 46 0.12
7gb|AC122352.4| Mus musculus BAC clone RP23-389C11 from chromosom... 44 0.47
8gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 44 0.47
9gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
10ref|XM_960590.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.9
11ref|XM_331750.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.9
12emb|X54638.1|BJGLYA B. japonicum glyA gene for serine hydroxymet... 42 1.9
13dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
15dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.9
16dbj|AK119270.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
18gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
19emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.9
20gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 7.3
21gb|BC034126.1| Mus musculus protein kinase N3, mRNA (cDNA clone ... 40 7.3
22gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
23gb|AC091519.16| Mus musculus strain 129/SvJ chromosome 2 clone m... 40 7.3
24gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 geno... 40 7.3
25gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete... 40 7.3
26ref|XM_961432.1| PREDICTED: Tribolium castaneum similar to leuci... 40 7.3
27emb|Z99953.1|PVZ99953 Phaseolus vulgaris Moldavian encoding cyst... 40 7.3
28gb|AC011591.9| Homo sapiens, clone RP11-118B18, complete sequence 40 7.3
29dbj|AK142988.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 40 7.3
30dbj|AK154801.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 7.3
31dbj|AK142182.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 40 7.3
32ref|XM_393327.2| PREDICTED: Apis mellifera similar to GA15167-PA... 40 7.3
33dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
34gb|AC139667.5| Homo sapiens 3 BAC RP11-88B8 (Roswell Park Cancer... 40 7.3
35gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.3
36ref|XM_216019.3| PREDICTED: Rattus norvegicus protein kinase N3 ... 40 7.3
37emb|BX005298.9| Mouse DNA sequence from clone RP23-261D24 on chr... 40 7.3
38ref|XM_316508.2| Anopheles gambiae str. PEST ENSANGP00000013450 ... 40 7.3
39emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 7.3
40gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 7.3
41gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
42ref|NM_153805.1| Mus musculus protein kinase N3 (Pkn3), mRNA 40 7.3
43dbj|AB038598.1| Vigna mungo mRNA for cysteine protease, complete... 40 7.3 
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 240     tcgacctcatggcgctggacagc 262
               |||||||||||||||||||||||
Sbjct: 1742179 tcgacctcatggcgctggacagc 1742157
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>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13
          Length = 347496

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 240   tcgacctcatggcgctggacagc 262
             |||||||||||||||||||||||
Sbjct: 10769 tcgacctcatggcgctggacagc 10747
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>emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 6/14
          Length = 300050

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 240    tcgacctcatggcgctggacagc 262
              |||||||||||||||||||||||
Sbjct: 112039 tcgacctcatggcgctggacagc 112017
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                           
Query: 92      ttcttcaacttcctaaaggaaggcctcctcctcccaacgcgcaaccggaggctcttcatg 151
               |||| ||||||||| ||||||||  |||||||||| |  |||||||||||  | ||| ||
Sbjct: 2253247 ttctacaacttcctcaaggaaggtttcctcctccctagccgcaaccggagcttgttcgtg 2253188

                      
Query: 152     gcggtct 158
               |||||||
Sbjct: 2253187 gcggtct 2253181
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>dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0448B11
          Length = 179858

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                          
Query: 92     ttcttcaacttcctaaaggaaggcctcctcctcccaacgcgcaaccggaggctcttcatg 151
              |||| ||||||||| ||||||||  |||||||||| |  |||||||||||  | ||| ||
Sbjct: 115085 ttctacaacttcctcaaggaaggtttcctcctccctagccgcaaccggagcttgttcgtg 115026

                     
Query: 152    gcggtct 158
              |||||||
Sbjct: 115025 gcggtct 115019
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 492    tgctgacgctcggcttcgtctac 514
              |||||||||||||||||||||||
Sbjct: 976089 tgctgacgctcggcttcgtctac 976111
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>gb|AC122352.4| Mus musculus BAC clone RP23-389C11 from chromosome 16, complete sequence
          Length = 196519

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 103    cctaaaggaaggcctcctcctc 124
              ||||||||||||||||||||||
Sbjct: 131685 cctaaaggaaggcctcctcctc 131664
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 491    ctgctgacgctcggcttcgtctacgt 516
              |||||| |||||||||||||||||||
Sbjct: 343374 ctgctgccgctcggcttcgtctacgt 343399



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 194     ctcggcagcgacgtcgtcatc 214
               |||||||||||||||||||||
Sbjct: 1455873 ctcggcagcgacgtcgtcatc 1455853
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>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0074E19 map R1938, complete sequence
          Length = 160847

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 387   tcctcctcctcttcgccgccg 407
             |||||||||||||||||||||
Sbjct: 98445 tcctcctcctcttcgccgccg 98465
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>ref|XM_960590.1| Neurospora crassa OR74A hypothetical protein (NCU02552.1) partial
           mRNA
          Length = 1185

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 383 cggatcctcctcctcttcgcc 403
           |||||||||||||||||||||
Sbjct: 579 cggatcctcctcctcttcgcc 559
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>ref|XM_331750.1| Neurospora crassa OR74A hypothetical protein (NCU02552.1) partial
           mRNA
          Length = 1185

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 383 cggatcctcctcctcttcgcc 403
           |||||||||||||||||||||
Sbjct: 579 cggatcctcctcctcttcgcc 559
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>emb|X54638.1|BJGLYA B. japonicum glyA gene for serine hydroxymethyltransferase
          Length = 2564

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 236  cagctcgacctcatggcgctg 256
            |||||||||||||||||||||
Sbjct: 1160 cagctcgacctcatggcgctg 1140
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 387      tcctcctcctcttcgccgccg 407
                |||||||||||||||||||||
Sbjct: 23436265 tcctcctcctcttcgccgccg 23436285
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 387     tcctcctcctcttcgccgccg 407
               |||||||||||||||||||||
Sbjct: 2322446 tcctcctcctcttcgccgccg 2322466



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 491      ctgctgacgctcggcttcgt 510
                ||||||||||||||||||||
Sbjct: 22464755 ctgctgacgctcggcttcgt 22464774
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 236     cagctcgacctcatggcgctg 256
               |||||||||||||||||||||
Sbjct: 5579923 cagctcgacctcatggcgctg 5579943
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>dbj|AK119270.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-A10, full
            insert sequence
          Length = 3053

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 387  tcctcctcctcttcgccgccg 407
            |||||||||||||||||||||
Sbjct: 1617 tcctcctcctcttcgccgccg 1637
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 387     tcctcctcctcttcgccgccg 407
               |||||||||||||||||||||
Sbjct: 2330227 tcctcctcctcttcgccgccg 2330247



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 491      ctgctgacgctcggcttcgt 510
                ||||||||||||||||||||
Sbjct: 22774666 ctgctgacgctcggcttcgt 22774685
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 387      tcctcctcctcttcgccgccg 407
                |||||||||||||||||||||
Sbjct: 23364456 tcctcctcctcttcgccgccg 23364476
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>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 162261

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 387   tcctcctcctcttcgccgccg 407
             |||||||||||||||||||||
Sbjct: 65894 tcctcctcctcttcgccgccg 65874
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 492     tgctgacgctcggcttcgtctacg 515
               ||||||||||||||||| ||||||
Sbjct: 1225475 tgctgacgctcggcttcatctacg 1225498
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>gb|BC034126.1| Mus musculus protein kinase N3, mRNA (cDNA clone MGC:31699
           IMAGE:4912536), complete cds
          Length = 2948

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 ttcgcctccaccacgctgct 189
           ||||||||||||||||||||
Sbjct: 964 ttcgcctccaccacgctgct 945
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>gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0030E22, complete sequence
          Length = 135468

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 491   ctgctgacgctcggcttcgt 510
             ||||||||||||||||||||
Sbjct: 21900 ctgctgacgctcggcttcgt 21919
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>gb|AC091519.16| Mus musculus strain 129/SvJ chromosome 2 clone mgs1-452h5, complete
              sequence
          Length = 229220

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    ttcgcctccaccacgctgct 189
              ||||||||||||||||||||
Sbjct: 170610 ttcgcctccaccacgctgct 170629
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>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete
             sequence
          Length = 131984

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   atcctcctcctcttcgccgc 405
             ||||||||||||||||||||
Sbjct: 43148 atcctcctcctcttcgccgc 43167
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>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence
          Length = 452156

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 253    gctggacagcgccgaccccg 272
              ||||||||||||||||||||
Sbjct: 344541 gctggacagcgccgaccccg 344560
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>ref|XM_961432.1| PREDICTED: Tribolium castaneum similar to leucine zipper, putative
           tumor suppressor 2 (LOC654963), mRNA
          Length = 1563

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 388 cctcctcctcttcgccgccg 407
           ||||||||||||||||||||
Sbjct: 389 cctcctcctcttcgccgccg 408
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>emb|Z99953.1|PVZ99953 Phaseolus vulgaris Moldavian encoding cysteine proteinase precursor
           (clone cp41)
          Length = 1376

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 389 ctcctcctcttcgccgccgt 408
           ||||||||||||||||||||
Sbjct: 28  ctcctcctcttcgccgccgt 47
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>gb|AC011591.9| Homo sapiens, clone RP11-118B18, complete sequence
          Length = 124779

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    ccttcttcaacttcctaaaggaag 113
             ||||||||| ||||||||||||||
Sbjct: 95090 ccttcttcaccttcctaaaggaag 95113
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>dbj|AK142988.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
            library, clone:E030028P03 product:protein kinase N3, full
            insert sequence
          Length = 2403

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  ttcgcctccaccacgctgct 189
            ||||||||||||||||||||
Sbjct: 1536 ttcgcctccaccacgctgct 1517
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>dbj|AK154801.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630107C11
            product:protein kinase N3, full insert sequence
          Length = 3462

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  ttcgcctccaccacgctgct 189
            ||||||||||||||||||||
Sbjct: 1502 ttcgcctccaccacgctgct 1483
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>dbj|AK142182.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
            library, clone:D330006L06 product:protein kinase N3, full
            insert sequence
          Length = 3451

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  ttcgcctccaccacgctgct 189
            ||||||||||||||||||||
Sbjct: 1480 ttcgcctccaccacgctgct 1461
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>ref|XM_393327.2| PREDICTED: Apis mellifera similar to GA15167-PA (LOC409836), mRNA
          Length = 4569

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 224  gccaacgagatccagctcga 243
            ||||||||||||||||||||
Sbjct: 3411 gccaacgagatccagctcga 3392
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 386      atcctcctcctcttcgccgc 405
                ||||||||||||||||||||
Sbjct: 18169980 atcctcctcctcttcgccgc 18169961
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>gb|AC139667.5| Homo sapiens 3 BAC RP11-88B8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 135668

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 300   aggaggtccaggatgacaccaagg 323
             ||||||||||||||||| ||||||
Sbjct: 52740 aggaggtccaggatgactccaagg 52763
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 378     ccgtccggatcctcctcctc 397
               ||||||||||||||||||||
Sbjct: 3881469 ccgtccggatcctcctcctc 3881488
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>ref|XM_216019.3| PREDICTED: Rattus norvegicus protein kinase N3 (predicted)
            (Pkn3_predicted), mRNA
          Length = 3049

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  ttcgcctccaccacgctgct 189
            ||||||||||||||||||||
Sbjct: 1374 ttcgcctccaccacgctgct 1355
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>emb|BX005298.9| Mouse DNA sequence from clone RP23-261D24 on chromosome 2, complete
             sequence
          Length = 84664

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   ttcgcctccaccacgctgct 189
             ||||||||||||||||||||
Sbjct: 51968 ttcgcctccaccacgctgct 51949
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>ref|XM_316508.2| Anopheles gambiae str. PEST ENSANGP00000013450
           (ENSANGG00000010961), partial mRNA
          Length = 2736

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 cggatcctcctcctcttcgc 402
           ||||||||||||||||||||
Sbjct: 717 cggatcctcctcctcttcgc 698
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    acgagatccagctcgacctc 247
              ||||||||||||||||||||
Sbjct: 863685 acgagatccagctcgacctc 863666
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 492     tgctgacgctcggcttcgtctacg 515
               ||||||||||||||||| ||||||
Sbjct: 1662115 tgctgacgctcggcttcatctacg 1662092
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 386      atcctcctcctcttcgccgc 405
                ||||||||||||||||||||
Sbjct: 18179233 atcctcctcctcttcgccgc 18179214
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>ref|NM_153805.1| Mus musculus protein kinase N3 (Pkn3), mRNA
          Length = 2948

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 ttcgcctccaccacgctgct 189
           ||||||||||||||||||||
Sbjct: 964 ttcgcctccaccacgctgct 945
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>dbj|AB038598.1| Vigna mungo mRNA for cysteine protease, complete cds
          Length = 1424

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 389 ctcctcctcttcgccgccgt 408
           ||||||||||||||||||||
Sbjct: 34  ctcctcctcttcgccgccgt 53


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,980,307
Number of Sequences: 3902068
Number of extensions: 4980307
Number of successful extensions: 135270
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134108
Number of HSP's gapped (non-prelim): 1162
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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