ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart36c10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196501.1| Oryza sativa (japonica cultivar-group) putative class III chitinase (OSJNBa0032I20.12), mRNA Length = 867 Score = 224 bits (113), Expect = 2e-55 Identities = 224/261 (85%) Strand = Plus / Plus Query: 258 acgccgacgcccaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 317 |||||| |||| |||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 145 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 204 Query: 318 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 377 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 205 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 264 Query: 378 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 437 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 265 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 324 Query: 438 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggcctcgacggggtg 497 |||||||||||||| || || |||| || ||||| ||| |||||||||||||| || Sbjct: 325 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 384 Query: 498 gacgtcgactacgagcgcttc 518 |||||||||||||||| |||| Sbjct: 385 gacgtcgactacgagcacttc 405 Score = 163 bits (82), Expect = 7e-37 Identities = 115/126 (91%) Strand = Plus / Plus Query: 114 atgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttc 173 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 1 atgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgcttc 60 Query: 174 tccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgac 233 |||||||||||| ||||| | | |||||||| ||| ||||||| |||||||||||||| Sbjct: 61 tccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatcgac 120 Query: 234 tacacg 239 |||||| Sbjct: 121 tacacg 126
>gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar Nipponbare Clone OSJNBa0061K21 From Chromosome 10, complete sequence Length = 112721 Score = 224 bits (113), Expect = 2e-55 Identities = 224/261 (85%) Strand = Plus / Plus Query: 258 acgccgacgcccaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 317 |||||| |||| |||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 28157 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 28216 Query: 318 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 377 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 28217 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 28276 Query: 378 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 437 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 28277 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 28336 Query: 438 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggcctcgacggggtg 497 |||||||||||||| || || |||| || ||||| ||| |||||||||||||| || Sbjct: 28337 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 28396 Query: 498 gacgtcgactacgagcgcttc 518 |||||||||||||||| |||| Sbjct: 28397 gacgtcgactacgagcacttc 28417 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 119 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 178 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 15572 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 15631 Query: 179 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 236 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 15632 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 15689 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 111 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 170 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 28010 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 28069 Query: 171 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 230 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 28070 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 28129 Query: 231 gactacacg 239 ||||||||| Sbjct: 28130 gactacacg 28138 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 466 gcctcatcaacgagtacggcctcgacggggtggacgtcgactacgagcgcttcgccaccg 525 |||||||| ||| |||||||||||||| || |||||||||||||||| ||||||| ||| Sbjct: 15925 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacgagcacttcgccgccg 15984 Query: 526 g 526 | Sbjct: 15985 g 15985 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 271 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 330 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 15724 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 15783 Query: 331 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 384 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 15784 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 15837
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 224 bits (113), Expect = 2e-55 Identities = 224/261 (85%) Strand = Plus / Plus Query: 258 acgccgacgcccaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 317 |||||| |||| |||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 14088519 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 14088578 Query: 318 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 377 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 14088579 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 14088638 Query: 378 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 437 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 14088639 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 14088698 Query: 438 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggcctcgacggggtg 497 |||||||||||||| || || |||| || ||||| ||| |||||||||||||| || Sbjct: 14088699 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 14088758 Query: 498 gacgtcgactacgagcgcttc 518 |||||||||||||||| |||| Sbjct: 14088759 gacgtcgactacgagcacttc 14088779 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 119 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 178 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 14075934 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 14075993 Query: 179 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 236 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 14075994 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 14076051 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 111 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 170 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 14088372 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 14088431 Query: 171 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 230 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 14088432 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 14088491 Query: 231 gactacacg 239 ||||||||| Sbjct: 14088492 gactacacg 14088500 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 466 gcctcatcaacgagtacggcctcgacggggtggacgtcgactacgagcgcttcgccaccg 525 |||||||| ||| |||||||||||||| || |||||||||||||||| ||||||| ||| Sbjct: 14076287 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacgagcacttcgccgccg 14076346 Query: 526 g 526 | Sbjct: 14076347 g 14076347 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 271 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 330 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 14076086 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 14076145 Query: 331 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 384 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 14076146 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 14076199
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 224 bits (113), Expect = 2e-55 Identities = 224/261 (85%) Strand = Plus / Plus Query: 258 acgccgacgcccaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 317 |||||| |||| |||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 104648 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 104707 Query: 318 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 377 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 104708 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 104767 Query: 378 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 437 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 104768 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 104827 Query: 438 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggcctcgacggggtg 497 |||||||||||||| || || |||| || ||||| ||| |||||||||||||| || Sbjct: 104828 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 104887 Query: 498 gacgtcgactacgagcgcttc 518 |||||||||||||||| |||| Sbjct: 104888 gacgtcgactacgagcacttc 104908 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 119 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 178 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 92063 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 92122 Query: 179 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 236 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 92123 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 92180 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 111 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 170 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 104501 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 104560 Query: 171 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 230 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 104561 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 104620 Query: 231 gactacacg 239 ||||||||| Sbjct: 104621 gactacacg 104629 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 466 gcctcatcaacgagtacggcctcgacggggtggacgtcgactacgagcgcttcgccaccg 525 |||||||| ||| |||||||||||||| || |||||||||||||||| ||||||| ||| Sbjct: 92416 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacgagcacttcgccgccg 92475 Query: 526 g 526 | Sbjct: 92476 g 92476 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 271 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 330 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 92215 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 92274 Query: 331 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 384 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 92275 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 92328
>dbj|AK104292.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F06, full insert sequence Length = 1108 Score = 224 bits (113), Expect = 2e-55 Identities = 224/261 (85%) Strand = Plus / Plus Query: 258 acgccgacgcccaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 317 |||||| |||| |||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 164 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 223 Query: 318 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 377 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 224 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 283 Query: 378 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 437 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 284 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 343 Query: 438 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggcctcgacggggtg 497 |||||||||||||| || || |||| || ||||| ||| |||||||||||||| || Sbjct: 344 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 403 Query: 498 gacgtcgactacgagcgcttc 518 |||||||||||||||| |||| Sbjct: 404 gacgtcgactacgagcacttc 424 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 111 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 170 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 17 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 76 Query: 171 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 230 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 77 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 136 Query: 231 gactacacg 239 ||||||||| Sbjct: 137 gactacacg 145
>dbj|AK104222.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E05, full insert sequence Length = 1069 Score = 224 bits (113), Expect = 2e-55 Identities = 224/261 (85%) Strand = Plus / Plus Query: 258 acgccgacgcccaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 317 |||||| |||| |||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 169 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 228 Query: 318 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 377 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 229 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 288 Query: 378 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 437 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 289 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 348 Query: 438 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggcctcgacggggtg 497 |||||||||||||| || || |||| || ||||| ||| |||||||||||||| || Sbjct: 349 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 408 Query: 498 gacgtcgactacgagcgcttc 518 |||||||||||||||| |||| Sbjct: 409 gacgtcgactacgagcacttc 429 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 111 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 170 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 22 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 81 Query: 171 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 230 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 82 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 141 Query: 231 gactacacg 239 ||||||||| Sbjct: 142 gactacacg 150
>dbj|AK099101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025I19, full insert sequence Length = 1068 Score = 224 bits (113), Expect = 2e-55 Identities = 224/261 (85%) Strand = Plus / Plus Query: 258 acgccgacgcccaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 317 |||||| |||| |||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 168 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 227 Query: 318 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 377 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 228 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 287 Query: 378 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 437 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 288 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 347 Query: 438 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggcctcgacggggtg 497 |||||||||||||| || || |||| || ||||| ||| |||||||||||||| || Sbjct: 348 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 407 Query: 498 gacgtcgactacgagcgcttc 518 |||||||||||||||| |||| Sbjct: 408 gacgtcgactacgagcacttc 428 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 111 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 170 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 21 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 80 Query: 171 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 230 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 81 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 140 Query: 231 gactacacg 239 ||||||||| Sbjct: 141 gactacacg 149
>dbj|AK060033.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H08, full insert sequence Length = 1134 Score = 224 bits (113), Expect = 2e-55 Identities = 224/261 (85%) Strand = Plus / Plus Query: 258 acgccgacgcccaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 317 |||||| |||| |||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 169 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 228 Query: 318 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 377 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 229 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 288 Query: 378 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 437 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 289 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 348 Query: 438 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggcctcgacggggtg 497 |||||||||||||| || || |||| || ||||| ||| |||||||||||||| || Sbjct: 349 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 408 Query: 498 gacgtcgactacgagcgcttc 518 |||||||||||||||| |||| Sbjct: 409 gacgtcgactacgagcacttc 429 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 111 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 170 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 22 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 81 Query: 171 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 230 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 82 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 141 Query: 231 gactacacg 239 ||||||||| Sbjct: 142 gactacacg 150
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 224 bits (113), Expect = 2e-55 Identities = 224/261 (85%) Strand = Plus / Plus Query: 258 acgccgacgcccaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 317 |||||| |||| |||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 14096761 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 14096820 Query: 318 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 377 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 14096821 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 14096880 Query: 378 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 437 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 14096881 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 14096940 Query: 438 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggcctcgacggggtg 497 |||||||||||||| || || |||| || ||||| ||| |||||||||||||| || Sbjct: 14096941 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 14097000 Query: 498 gacgtcgactacgagcgcttc 518 |||||||||||||||| |||| Sbjct: 14097001 gacgtcgactacgagcacttc 14097021 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 119 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 178 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 14084176 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 14084235 Query: 179 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 236 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 14084236 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 14084293 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 111 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 170 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 14096614 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 14096673 Query: 171 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 230 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 14096674 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 14096733 Query: 231 gactacacg 239 ||||||||| Sbjct: 14096734 gactacacg 14096742 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 466 gcctcatcaacgagtacggcctcgacggggtggacgtcgactacgagcgcttcgccaccg 525 |||||||| ||| |||||||||||||| || |||||||||||||||| ||||||| ||| Sbjct: 14084529 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacgagcacttcgccgccg 14084588 Query: 526 g 526 | Sbjct: 14084589 g 14084589 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 271 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 330 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 14084328 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 14084387 Query: 331 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 384 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 14084388 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 14084441
>dbj|AK119555.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E12, full insert sequence Length = 1089 Score = 218 bits (110), Expect = 1e-53 Identities = 197/226 (87%) Strand = Plus / Plus Query: 293 ctgggacacggcgagcctgtcccgcgccgacgtggccgccatcaaggccgcgcacccgaa 352 |||||||||||| | |||||||| |||||||| |||||| ||||||| |||||||| || Sbjct: 204 ctgggacacggccaacctgtccccggccgacgtcgccgccgtcaaggcggcgcaccccaa 263 Query: 353 cgtgagcgtcatggtcggcctcggcggcgacagcgtgcaggacatcgtcaaggtctcctt 412 ||| |||||||||||||||||||||||||||||||||||||||| || |||||||| ||| Sbjct: 264 cgtcagcgtcatggtcggcctcggcggcgacagcgtgcaggacaccgccaaggtcttctt 323 Query: 413 cgcgcccaactccgtcgactcgtgggtggccaacgccgtggcgtcgctctcgcgcctcat 472 | | || | |||||||||||||||||||||||||||||| || || |||| || |||| Sbjct: 324 ctccccgacctccgtcgactcgtgggtggccaacgccgtcgcctccgtctccggcatcat 383 Query: 473 caacgagtacggcctcgacggggtggacgtcgactacgagcgcttc 518 | ||| |||||||||||||| || |||||||||||||||| |||| Sbjct: 384 cgacgcctacggcctcgacggcgtcgacgtcgactacgagcacttc 429 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 111 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 170 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 22 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 81 Query: 171 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 230 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 82 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 141 Query: 231 gactacacg 239 ||||||||| Sbjct: 142 gactacacg 150
>ref|NM_196498.1| Oryza sativa (japonica cultivar-group) putative class III chitinase (OSJNBa0032I20.10), mRNA Length = 861 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 119 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 178 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 6 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 65 Query: 179 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 236 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 66 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 123 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 466 gcctcatcaacgagtacggcctcgacggggtggacgtcgactacgagcgcttcgccaccg 525 |||||||| ||| |||||||||||||| || |||||||||||||||| ||||||| ||| Sbjct: 359 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacgagcacttcgccgccg 418 Query: 526 g 526 | Sbjct: 419 g 419 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 271 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 330 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 158 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 217 Query: 331 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 384 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 218 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 271
>gb|AF296279.1|AF296279 Oryza sativa subsp. japonica class III chitinase (chib1) gene, complete cds Length = 1038 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 119 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 178 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 57 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 116 Query: 179 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 236 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 117 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 174 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 466 gcctcatcaacgagtacggcctcgacggggtggacgtcgactacgagcgcttcgccaccg 525 |||||||| ||| |||||||||||||| || |||||||||||||||| ||||||| ||| Sbjct: 410 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacgagcacttcgccgccg 469 Query: 526 g 526 | Sbjct: 470 g 470 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 271 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 330 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 209 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 268 Query: 331 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 384 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 269 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 322
>dbj|AK104397.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C10, full insert sequence Length = 989 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 119 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 178 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 62 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 121 Query: 179 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 236 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 122 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 179 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 466 gcctcatcaacgagtacggcctcgacggggtggacgtcgactacgagcgcttcgccaccg 525 |||||||| ||| |||||||||||||| || |||||||||||||||| ||||||| ||| Sbjct: 415 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacgagcacttcgccgccg 474 Query: 526 g 526 | Sbjct: 475 g 475 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 271 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 330 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 214 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 273 Query: 331 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 384 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 274 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 327
>dbj|AK104202.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C04, full insert sequence Length = 1053 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 119 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 178 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 62 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 121 Query: 179 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 236 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 122 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 179 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 466 gcctcatcaacgagtacggcctcgacggggtggacgtcgactacgagcgcttcgccaccg 525 |||||||| ||| |||||||||||||| || |||||||||||||||| ||||||| ||| Sbjct: 415 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacgagcacttcgccgccg 474 Query: 526 g 526 | Sbjct: 475 g 475 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 271 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 330 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 214 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 273 Query: 331 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 384 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 274 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 327
>dbj|AK104100.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G07, full insert sequence Length = 1026 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 119 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 178 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 62 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 121 Query: 179 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 236 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 122 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 179 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 466 gcctcatcaacgagtacggcctcgacggggtggacgtcgactacgagcgcttcgccaccg 525 |||||||| ||| |||||||||||||| || |||||||||||||||| ||||||| ||| Sbjct: 415 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacgagcacttcgccgccg 474 Query: 526 g 526 | Sbjct: 475 g 475 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 271 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 330 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 214 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 273 Query: 331 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 384 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 274 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 327
>dbj|AK059767.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G07, full insert sequence Length = 1069 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 119 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 178 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 62 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 121 Query: 179 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 236 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 122 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 179 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 466 gcctcatcaacgagtacggcctcgacggggtggacgtcgactacgagcgcttcgccaccg 525 |||||||| ||| |||||||||||||| || |||||||||||||||| ||||||| ||| Sbjct: 415 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacgagcacttcgccgccg 474 Query: 526 g 526 | Sbjct: 475 g 475 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 271 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 330 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 214 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 273 Query: 331 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 384 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 274 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 327
>dbj|AB035668.1| Tulipa bakeri tbc1 mRNA for bulb chitinase-1, complete cds Length = 1106 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 204 ttccactacatcctcgccttcgccatcgactacac 238 ||||||| ||||||||| ||||||||||||||||| Sbjct: 171 ttccacttcatcctcgctttcgccatcgactacac 205
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Minus Query: 240 ccggtggcgcagaagccgacgccgacgc 267 ||||||||||||| |||||||||||||| Sbjct: 937764 ccggtggcgcagacgccgacgccgacgc 937737
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 319 ccgacgtggccgccatcaaggccgcgc 345 |||||| |||||||||||||||||||| Sbjct: 1311810 ccgacgaggccgccatcaaggccgcgc 1311836
>gb|DQ427568.1| Sorghum bicolor voucher PI585454 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 gctccagctcgatcgatcgccat 115 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427567.1| Sorghum bicolor voucher PI267539 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 gctccagctcgatcgatcgccat 115 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427566.1| Sorghum bicolor voucher PI267408 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 gctccagctcgatcgatcgccat 115 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427564.1| Sorghum bicolor voucher PI152702 locus CSU705 genomic sequence Length = 684 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 gctccagctcgatcgatcgccat 115 ||||||||||||||||||||||| Sbjct: 537 gctccagctcgatcgatcgccat 559
>gb|DQ427563.1| Sorghum bicolor voucher NSL92371 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 gctccagctcgatcgatcgccat 115 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427562.1| Sorghum bicolor voucher NSL87902 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 gctccagctcgatcgatcgccat 115 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427560.1| Sorghum bicolor voucher NSL77217 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 gctccagctcgatcgatcgccat 115 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427559.1| Sorghum bicolor voucher NSL77034 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 gctccagctcgatcgatcgccat 115 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427557.1| Sorghum bicolor voucher NSL56003 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 gctccagctcgatcgatcgccat 115 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427556.1| Sorghum bicolor voucher NSL55243 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 gctccagctcgatcgatcgccat 115 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427554.1| Sorghum bicolor voucher NSL51030 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 gctccagctcgatcgatcgccat 115 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427553.1| Sorghum bicolor voucher NSL50875 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 gctccagctcgatcgatcgccat 115 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>emb|AL732372.15| Human DNA sequence from clone RP4-669L17 on chromosome 1 Contains five novel genes, two novel pseudogenes and the gene for a novel protein similar to the olfactory receptor family, complete sequence Length = 153649 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 88023 ccaccagcaggcccggctaatt 88044
>emb|AL627309.15| Human DNA sequence from clone RP11-34P13 on chromosome 1 Contains a pseudogene similar to part of DEAD/H box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) (DDX11), two novel pseudogenes, nine novel genes, two novel proteins similar to the olfactory receptor family, a capicua homolog (Drosophila) (CIC) pseudogene and two CpG islands, complete sequence Length = 166904 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 92612 ccaccagcaggcccggctaatt 92591
>emb|AL672310.3| Human DNA sequence from clone RP11-226I21 on chromosome 6 Contains putative novel gene, complete sequence Length = 53890 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 33906 ccaccagcaggcccggctaatt 33927
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145 biosynthetic gene cluster, complete sequence Length = 126933 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 367 tcggcctcggcggcgacagcgt 388 |||||||||||||||||||||| Sbjct: 64543 tcggcctcggcggcgacagcgt 64564
>gb|AC096542.2| Homo sapiens chromosome 1 clone RP11-332L18, complete sequence Length = 189411 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 171608 ccaccagcaggcccggctaatt 171587
>gb|AC138034.2| Homo sapiens chromosome 5 clone XXcos-B22C80, complete sequence Length = 36893 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 35586 ccaccagcaggcccggctaatt 35607
>gb|AF270613.1|AF270613 Homo sapiens clone 5qtel_ctg0024_c103t3c80t7_stelrpt sequence Length = 1670 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 376 ccaccagcaggcccggctaatt 397
>gb|AC138393.2| Homo sapiens chromosome 1 clone RP11-504P24, complete sequence Length = 184644 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 21783 ccaccagcaggcccggctaatt 21762
>gb|AC136309.9| Homo sapiens chromosome 11, clone RP11-242C5, complete sequence Length = 150642 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 36380 ccaccagcaggcccggctaatt 36359
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 465 cgcctcatcaacgagtacggcc 486 |||||||||||||||||||||| Sbjct: 4502585 cgcctcatcaacgagtacggcc 4502564 Score = 40.1 bits (20), Expect = 7.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 469 tcatcaacgagtacggcctcgacggggtggacgtcgactacgag 512 ||||| ||||||||||||| ||||| ||||| |||||| |||| Sbjct: 3178422 tcatcgacgagtacggcctggacggcctggacatcgacttcgag 3178379
>gb|AC131281.7| Homo sapiens chromosome 8, clone RP11-585F1, complete sequence Length = 120139 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 89638 ccaccagcaggcccggctaatt 89659
>gb|AC138033.1| Homo sapiens chromosome 5 clone XXcos-B22C66, complete sequence Length = 38954 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 24733 ccaccagcaggcccggctaatt 24712
>gb|AC114498.2| Homo sapiens chromosome 1 clone RP5-857K21, complete sequence Length = 121664 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 63361 ccaccagcaggcccggctaatt 63340
>gb|AC130223.2| Homo sapiens cosmid clone XXcos-2003C17 from 2, complete sequence Length = 16515 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 4658 ccaccagcaggcccggctaatt 4679
>gb|AC134873.2| Homo sapiens cosmid clone XXcos-2003C15 from 2, complete sequence Length = 36966 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 8837 ccaccagcaggcccggctaatt 8816
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Minus Query: 468 ctcatcaacgagtacggcctcgacggggtggacg 501 |||||| ||||||||||||||||| | ||||||| Sbjct: 4012366 ctcatcgacgagtacggcctcgactgcgtggacg 4012333
>emb|BX649379.10| Human DNA sequence from clone RP5-1040D10 on chromosome 1, complete sequence Length = 93321 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 30071 ccaccagcaggcccggctaatt 30092
>gb|AC004908.1|AC004908 Homo sapiens PAC clone RP5-855D21, complete sequence Length = 138251 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 7425 ccaccagcaggcccggctaatt 7404
>emb|Z96631.1|HS5QT027 H.sapiens telomeric DNA sequence, clone 5QTEL027, read 5QTELOO027.seq Length = 485 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 159 ccaccagcaggcccggctaatt 180
>dbj|AP006222.1| Homo sapiens genomic DNA, chromosome Un, clone:CMC-68E4, telomere region, complete sequence Length = 40302 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ccaccagcaggcccggctaatt 31 |||||||||||||||||||||| Sbjct: 22025 ccaccagcaggcccggctaatt 22004
>dbj|AB070951.1| Streptomyces avermitilis peptide-2 biosynthetic gene cluster Length = 32748 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 465 cgcctcatcaacgagtacggcc 486 |||||||||||||||||||||| Sbjct: 18275 cgcctcatcaacgagtacggcc 18296
>ref|XM_475628.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1509 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 322 acgtggccgccatcaaggccgcgca 346 ||||||||||||||||||| ||||| Sbjct: 152 acgtggccgccatcaaggcggcgca 176
>gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017J22, complete sequence Length = 177153 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 322 acgtggccgccatcaaggccgcgca 346 ||||||||||||||||||| ||||| Sbjct: 96030 acgtggccgccatcaaggcggcgca 96054
>gb|AC137614.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0034O12, complete sequence Length = 156263 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 322 acgtggccgccatcaaggccgcgca 346 ||||||||||||||||||| ||||| Sbjct: 32179 acgtggccgccatcaaggcggcgca 32203
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 312 tcccgcgccgacgtggccgcc 332 ||||||||||||||||||||| Sbjct: 1672585 tcccgcgccgacgtggccgcc 1672605
>gb|AC104276.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1231_F08, complete sequence Length = 118049 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 322 acgtggccgccatcaaggccgcgca 346 ||||||||||||||||||| ||||| Sbjct: 33830 acgtggccgccatcaaggcggcgca 33854
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 368 cggcctcggcggcgacagcgt 388 ||||||||||||||||||||| Sbjct: 350738 cggcctcggcggcgacagcgt 350758
>emb|AL138958.18| Human DNA sequence from clone RP11-206I15 on chromosome 13 Contains the 3' end of a novel gene (KIAA0410), a transcription elongation factor B (SIII) polypeptide 2 (18kD, elongin B) (TCEB2) pseudogene, the 5' end of the ATP8A2 gene for aminophospholipid transporter-like ATPase Class I type 8A member 2 and three CpG islands, complete sequence Length = 162973 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 caccagcaggcccggctaatt 31 ||||||||||||||||||||| Sbjct: 147353 caccagcaggcccggctaatt 147373
>gb|AC096949.2| Homo sapiens chromosome 1 clone RP4-581O6, complete sequence Length = 106449 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 caccagcaggcccggctaatt 31 ||||||||||||||||||||| Sbjct: 102261 caccagcaggcccggctaatt 102241
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 aggccagctccagctcgatcg 107 ||||||||||||||||||||| Sbjct: 3795001 aggccagctccagctcgatcg 3794981
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 368 cggcctcggcggcgacagcgt 388 ||||||||||||||||||||| Sbjct: 566692 cggcctcggcggcgacagcgt 566712
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 322 acgtggccgccatcaaggccgcgca 346 ||||||||||||||||||| ||||| Sbjct: 3466548 acgtggccgccatcaaggcggcgca 3466572
>gb|AC005484.2|AC005484 Homo sapiens PAC clone RP5-847O8 from 14q24.3, complete sequence Length = 131943 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 caccagcaggcccggctaatt 31 ||||||||||||||||||||| Sbjct: 22447 caccagcaggcccggctaatt 22467
>ref|XM_478772.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1227 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cagaagccgacgccgacgcc 268 |||||||||||||||||||| Sbjct: 68 cagaagccgacgccgacgcc 87
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 cggcctcggcggcgacagcg 387 |||||||||||||||||||| Sbjct: 703627 cggcctcggcggcgacagcg 703646
>gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough plasmid pDV, complete sequence Length = 202301 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 cccgcgccgacgtggccgcc 332 |||||||||||||||||||| Sbjct: 2097 cccgcgccgacgtggccgcc 2078
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 caaggccgcgcacccgaacg 354 |||||||||||||||||||| Sbjct: 3753613 caaggccgcgcacccgaacg 3753594
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 caaggccgcgcacccgaacg 354 |||||||||||||||||||| Sbjct: 152700 caaggccgcgcacccgaacg 152719
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 caaggccgcgcacccgaacg 354 |||||||||||||||||||| Sbjct: 75754 caaggccgcgcacccgaacg 75773
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 cgactacgagcgcttcgcca 522 |||||||||||||||||||| Sbjct: 2358774 cgactacgagcgcttcgcca 2358755
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 316 gcgccgacgtggccgccatcaaggccgc 343 |||||||||||| |||||||||||||| Sbjct: 2674896 gcgccgacgtggaggccatcaaggccgc 2674869
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cagaagccgacgccgacgcc 268 |||||||||||||||||||| Sbjct: 22949868 cagaagccgacgccgacgcc 22949887
>gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 daptomycin biosynthetic gene cluster, partial sequence Length = 127559 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 cctcggcggcgacagcgtgc 390 |||||||||||||||||||| Sbjct: 68811 cctcggcggcgacagcgtgc 68830
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 tcgactacgagcgcttcgccaccg 525 ||||||||||||||||| |||||| Sbjct: 4330226 tcgactacgagcgcttccccaccg 4330203
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 481 acggcctcgacggggtggacgtcg 504 ||||||||||||||||| |||||| Sbjct: 1303837 acggcctcgacggggtgcacgtcg 1303814
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 359 cgtcatggtcggcctcggcggcga 382 ||||||||||||| |||||||||| Sbjct: 6456876 cgtcatggtcggcatcggcggcga 6456853
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cagaagccgacgccgacgcc 268 |||||||||||||||||||| Sbjct: 25082 cagaagccgacgccgacgcc 25101
>dbj|AK065242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I12, full insert sequence Length = 1226 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cagaagccgacgccgacgcc 268 |||||||||||||||||||| Sbjct: 68 cagaagccgacgccgacgcc 87
>gb|BC111715.1| Homo sapiens protein tyrosine phosphatase, receptor type, H, mRNA (cDNA clone MGC:133059 IMAGE:40008777), complete cds Length = 2951 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 acgtggccgccatcaaggcc 341 |||||||||||||||||||| Sbjct: 2800 acgtggccgccatcaaggcc 2819 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,140,555 Number of Sequences: 3902068 Number of extensions: 3140555 Number of successful extensions: 86990 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84069 Number of HSP's gapped (non-prelim): 2901 length of query: 527 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 504 effective length of database: 17,143,297,704 effective search space: 8640222042816 effective search space used: 8640222042816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
