>GLGB1_STRAW (Q82JF0) 1,4-alpha-glucan branching enzyme 1 (EC 2.4.1.18)|
           (Glycogen branching enzyme 1) (BE 1)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase 1)
          Length = 838

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 21/68 (30%)
 Frame = +3

Query: 375 SDRAWV-----------PFSLRNIHTPPPRPHLSYSTGVDAFPSAFS----------PYK 491
           +D AW+           PFS+  +H P  RP L+Y    +  P+  +          P  
Sbjct: 339 ADEAWMAARGERPVHESPFSVYEVHLPSWRPGLTYRQLAEQLPAYVADLGFTHVELLPVA 398

Query: 492 EHPXGAAW 515
           EHP G +W
Sbjct: 399 EHPFGGSW 406

>NORK_MEDTR (Q8L4H4) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does|
           not make infections protein 2) (Symbiosis receptor-like
           kinase) (MtSYMRK)
          Length = 925

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +1

Query: 394 PSAFGTSILLHLVLTYPTQPGWMPSPLLSV-HIKNIHXGQHGSDSETYDTE 543
           PS   +S+L+ L L+Y    GW+P  ++S+ H+K+++ G + S S+   T+
Sbjct: 448 PSFPPSSLLISLDLSYNDLSGWLPESIISLPHLKSLYFGCNPSMSDEDTTK 498

>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Plakophilin-related armadillo repeat
            protein-interacting PDZ protein)
          Length = 2766

 Score = 32.3 bits (72), Expect = 0.89
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
 Frame = +1

Query: 319  FDRNGDGVIYPWETFQSLRAIGLGSPSAFGTSILLHLVLTY------PTQPGWMPSPLLS 480
            ++ + DG + P  +    RA  L +  +  TS LLH  +T       P  P  + +PLL 
Sbjct: 846  YETSEDGSLLPVPSAHKARANSLVTLGSQRTSGLLHKQVTVARQASLPGSPQVLRNPLLR 905

Query: 481  VHIKNIHXGQHGSDSETYDTEG 546
                  +    GSD E +D EG
Sbjct: 906  QRRVRCYDSNGGSDDEDFDGEG 927

>GLGB2_STRAW (Q825Q8) 1,4-alpha-glucan branching enzyme 2 (EC 2.4.1.18)|
           (Glycogen branching enzyme 2) (BE 2)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase 2)
          Length = 592

 Score = 32.3 bits (72), Expect = 0.89
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
 Frame = +3

Query: 393 PFSLRNIHTPPPRPHLSYSTGVDAFPSAFS----------PYKEHPXGAAW 515
           PFS+  +H P  RP L+Y    +  P+  +          P  EHP G +W
Sbjct: 117 PFSVYEVHLPSWRPGLTYRQLAEQLPAYVADLGFTHVELLPVAEHPFGGSW 167

>GLGB2_STRCO (Q59832) 1,4-alpha-glucan branching enzyme 2 (EC 2.4.1.18)|
           (Glycogen branching enzyme 2) (BE 2)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase 2)
          Length = 741

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
 Frame = +3

Query: 393 PFSLRNIHTPPPRPHLSYSTGVDAFPS----------AFSPYKEHPXGAAW 515
           PFS+  +H P  RP L+Y    +  P+             P  EHP G +W
Sbjct: 264 PFSVYEVHLPSWRPGLTYRELAEELPAYVKDLGFTHVELMPVAEHPYGPSW 314

>MINC_BRAJA (Q89MI2) Probable septum site-determining protein minC|
          Length = 231

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +1

Query: 217 ISGSSMAAVDPSHPEGSKGRDTKGMSVLQQHAAFFDRNGDGVIYPWETFQSLRAIGLGSP 396
           +SG     V+PS P+  +  + K  S+L ++     R+G  VI+P      L ++G G+ 
Sbjct: 100 LSGGRSCVVEPSAPKKVEKAEAKPTSLLLENPV---RSGQTVIFPEGDVTILGSVGSGAE 156

Query: 397 SAFGTSI 417
              G SI
Sbjct: 157 VVAGGSI 163

>AROQ1_AGRT5 (Q8UFR5) 3-dehydroquinate dehydratase 1 (EC 4.2.1.10)|
           (3-dehydroquinase 1) (Type II DHQase 1)
          Length = 145

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 316 FFDRNGDGVIYPWETFQSLRAIGLG-SPSAFG-TSILLHLVLTYPTQPGWMPSPLLSVHI 489
           F   N +GV+  W      RA G+  +P A+  TSI LH  +        + +P++ VHI
Sbjct: 49  FRQSNHEGVLVDWLHEAGERAAGVVINPGAYSHTSIALHDAIRA------ISTPVVEVHI 102

Query: 490 KNIH 501
            NIH
Sbjct: 103 SNIH 106

>POLR_ELV (P35928) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1748

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +2

Query: 38  PTLRSRHLGFLPRSC-RPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAK 214
           P L   H  FLP SC +P +S   AA      P+     P   V   + L    Q Q A+
Sbjct: 551 PLLLDSHSSFLPSSCLQPPASPSIAAAPHPLPPAQKPPRPPTTVPTPKPLASPSQTQAAQ 610

Query: 215 P 217
           P
Sbjct: 611 P 611

>GLGB1_STRCO (Q59833) 1,4-alpha-glucan branching enzyme 1 (EC 2.4.1.18)|
           (Glycogen branching enzyme 1) (BE 1)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase 1)
          Length = 774

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
 Frame = +3

Query: 393 PFSLRNIHTPPPRPHLSYSTGVDAFPS----------AFSPYKEHPXGAAW 515
           P S+  +H P  RP L+Y    +  P+             P  EHP G +W
Sbjct: 300 PMSVYEVHLPSWRPGLTYRQLAEQLPAYVADLGFTHVELMPVAEHPFGGSW 350

>HEM3_MYCTU (P64336) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 309

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 62  GFLPRSCRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKP 217
           G L   CR G SR+ A ++   D        +AAVT ER L  DL+   + P
Sbjct: 191 GALAVECRAGDSRLVAVLAELDDADT-----RAAVTAERALLADLEAGCSAP 237

>HEM3_MYCBO (P64337) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 309

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 62  GFLPRSCRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKP 217
           G L   CR G SR+ A ++   D        +AAVT ER L  DL+   + P
Sbjct: 191 GALAVECRAGDSRLVAVLAELDDADT-----RAAVTAERALLADLEAGCSAP 237

>P66A_HUMAN (Q86YP4) Transcriptional repressor p66 alpha (Hp66alpha) (GATA zinc|
           finger domain-containing protein 2A)
          Length = 633

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 13  TTTSYRGAPHPALPSPRLSPKILQTRLVSSNRRHVVVDRSVAGDRGA 153
           + T+ RG  H   PSP+L      T LVS   RH   +R+V+  +G+
Sbjct: 534 SATTPRGVLHTFSPSPKLQNSASATALVSRTGRH--SERTVSAGKGS 578

>GLGB_LEIXX (Q6AEU4) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 733

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
 Frame = +3

Query: 366 KPASDRAWVPFSLRNIHTPPPRPHLSYSTGVDAFPS----------AFSPYKEHPXGAAW 515
           + ASD    P S+  +H    RP L Y    D               F P  EHP G +W
Sbjct: 247 RAASDPHTGPMSIYELHFGSWRPDLGYREAADQLIDYLGALGYTHVEFLPLAEHPFGGSW 306

>IAA4_ORYSA (Q59AF4) Auxin-responsive protein IAA4 (Indoleacetic acid-induced|
           protein 4)
          Length = 203

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2

Query: 80  CRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQ 199
           C+ G    +++M SST P+L+T +  +A T  R L+ DL+
Sbjct: 4   CKGGGMSPSSSMDSSTHPALSTTS--SAATARRDLSTDLR 41

>RIR1_EHV4 (P50642) Ribonucleoside-diphosphate reductase large chain (EC|
           1.17.4.1) (Ribonucleotide reductase)
          Length = 789

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = +2

Query: 5   LLVPPPAIAGLPTLRSRHLGFLPRSCRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKL 184
           L +PPP IAG+P      LG   R+    +  V A M +ST P++ +   Q  V   R L
Sbjct: 463 LALPPPNIAGVPYFDFAALG---RAAATATIFVNAMMCASTYPTVKS---QKGVEENRSL 516

Query: 185 NPDLQ 199
              +Q
Sbjct: 517 GLGIQ 521

>ZPI_PONPY (Q5RDA8) Protein Z-dependent protease inhibitor precursor|
           (PZ-dependent protease inhibitor) (PZI) (Serpin A10)
          Length = 443

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 250 SHPEGSKGRDTKGMSVLQQHAAFFDRNGDGVIYPWETFQSLRAIGLGSPSAFGTSIL--L 423
           S  + +K     G S+L++ +   D  G+ V  P+ T  ++  + LG+     T I   L
Sbjct: 71  SRQQLAKETSNFGFSLLRKISMRHD--GNIVFSPFGTSLAMTGLMLGATGLTETQIKRGL 128

Query: 424 HLVLTYPTQPGWMPS 468
           HL    PT+PG +PS
Sbjct: 129 HLQALNPTKPGLLPS 143

>SUPT3_HUMAN (O75486) Transcription initiation protein SPT3 homolog (SPT3-like|
           protein)
          Length = 399

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +3

Query: 363 PKPASDRAWVPFSLRNIHT--PPPRPHLSYSTGVDAFPSAFSPY 488
           P  A   + V FSL  +HT  PPPRP  S S      P    P+
Sbjct: 22  PPIAPSHSRVTFSLSTLHTLSPPPRPFPSVSRAAAQKPHHLHPH 65

>RECF_SYNJB (Q2JIB8) DNA replication and repair protein recF|
          Length = 380

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 1   SAARTTTSYRGAPHPALPSPRLSPKILQTRLVSSNRRHVVVDRSVAGDRGAP 156
           S  R T +    P   LP P+ SP+++Q + ++  R     + S+      P
Sbjct: 216 SGGRETLTLTYRPQVPLPDPQASPEVIQAQFLAEIRAKAAAEHSLGSSLVGP 267


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,745,633
Number of Sequences: 219361
Number of extensions: 1458487
Number of successful extensions: 5738
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5729
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)