ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart36b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC136216.2| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
2gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
5dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
6ref|NM_192570.1| Oryza sativa (japonica cultivar-group), predic... 64 5e-07
7emb|AL929533.12| Zebrafish DNA sequence from clone DKEY-18E17 in... 46 0.12
8ref|XM_481036.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.48
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
10dbj|AP004155.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
11dbj|AP004013.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
12gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
13gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.9
14emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 o... 42 1.9
15emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.9
16gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 1.9
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
18dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
19dbj|AK099683.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
20gb|AY103597.1| Zea mays PCO084307 mRNA sequence 42 1.9
21emb|AL935160.11| Zebrafish DNA sequence from clone CH211-184C7 i... 42 1.9
22emb|CR456684.10| Zebrafish DNA sequence from clone DKEY-46I8 in ... 42 1.9
23emb|AL731839.13| Mouse DNA sequence from clone RP23-76O22 on chr... 42 1.9
24ref|XM_550423.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.6
25ref|XM_480900.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.6
26ref|XM_473672.1| Oryza sativa (japonica cultivar-group), predic... 40 7.6
27gb|AC116075.5| Rattus norvegicus 6 BAC CH230-139H23 (Children's ... 40 7.6
28ref|XM_368420.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 40 7.6
29gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6
30gb|AC147154.4| Pan troglodytes BAC clone CH251-175E24 from Y, co... 40 7.6
31gb|AC147120.2| Pan troglodytes BAC clone CH251-531L7 from Y, com... 40 7.6
32gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.6
33gb|AC137597.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.6
34gb|AC141111.25| Medicago truncatula clone mth2-20c17, complete s... 40 7.6
35gb|AC146631.27| Medicago truncatula clone mth2-7g1, complete seq... 40 7.6
36emb|AL356963.17| Human DNA sequence from clone RP11-535A9 on chr... 40 7.6
37emb|AL357332.11| Human DNA sequence from clone RP11-96C13 on chr... 40 7.6
38emb|X54106.1|PHADH1 P.hybrida ADH1 gene for alcohol dehydrogenase 1 40 7.6
39emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 40 7.6
40emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 40 7.6
41emb|AL603889.5| Mouse DNA sequence from clone RP23-407M20 on chr... 40 7.6
42emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4,... 40 7.6
43dbj|BS000678.1| Pan troglodytes chromosome Y clone: PTB-448K11, ... 40 7.6
44dbj|BS000682.1| Pan troglodytes chromosome Y clone: PTB-178C02, ... 40 7.6
45gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 7.6
46gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.6
47gb|AC106898.5| Homo sapiens BAC clone RP11-310K19 from 4, comple... 40 7.6
48gb|AC068721.4| Homo sapiens BAC clone RP11-545L5 from 4, complet... 40 7.6
49gb|AC159024.2| Pan troglodytes BAC clone CH251-479P21 from chrom... 40 7.6
50dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
51dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
52gb|AC154111.2| Pan troglodytes BAC clone CH251-110D7 from chromo... 40 7.6
53gb|AC151056.2| Pan troglodytes BAC clone CH251-310D9 from chromo... 40 7.6
54dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
55dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
56dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.6
57ref|XM_234514.3| PREDICTED: Rattus norvegicus B-cell leukemia/ly... 40 7.6
58dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.6
59dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
60gb|AE004988.1| Halobacterium sp. NRC-1 section 19 of 170 of the ... 40 7.6
61dbj|AP004657.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
62dbj|AK104427.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
63dbj|AK103548.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
64dbj|AK103104.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
65dbj|AK100817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
66emb|AJ323167.1|HSA323167 Homo sapiens genomic sequence surroundi... 40 7.6
67dbj|AK099008.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
68dbj|AK070047.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
69gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, ... 40 7.6
70gb|AC151971.3| Mus musculus BAC clone RP24-282C4 from 9, complet... 40 7.6
71dbj|AK062527.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
72dbj|AK060707.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
73emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 7.6
74gb|AC163729.5| Pan troglodytes BAC clone CH251-1018P19 from chro... 40 7.6
75dbj|AB055105.1| Oryza sativa (japonica cultivar-group) V-ATPase ... 40 7.6
76gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.6
77gb|AC003047.1|AC003047 Homo sapiens Xp22 Cosmid U152D7 (Lawrence... 40 7.6
78gb|AC090481.9| Homo sapiens Xp BAC RP11-8H7 (Roswell Park Cancer... 40 7.6 
>gb|AC136216.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0022J22,
              complete sequence
          Length = 142854

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                                
Query: 463    atgctactggctgtggagggaggaggttttttctcatcatccgcatcagg 512
              ||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 121627 atgctactggctgtggaggtaggaggttttttctcgtcatctgcatcagg 121578
to top
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
             complete sequence
          Length = 142196

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                               
Query: 463   atgctactggctgtggagggaggaggttttttctcatcatccgcatcagg 512
             ||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 16825 atgctactggctgtggaggtaggaggttttttctcgtcatctgcatcagg 16776
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                                  
Query: 463      atgctactggctgtggagggaggaggttttttctcatcatccgcatcagg 512
                ||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 29238168 atgctactggctgtggaggtaggaggttttttctcgtcatctgcatcagg 29238119



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 35       cctcgcccgccgccgtcgccg 55
                |||||||||||||||||||||
Sbjct: 21858601 cctcgcccgccgccgtcgccg 21858621



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 41       ccgccgccgtcgccgacgagcctcctcc 68
                |||||||||||| |||||| ||||||||
Sbjct: 23849106 ccgccgccgtcgacgacgaccctcctcc 23849079
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                            
Query: 461      aaatgctactggctgtggagggaggaggttttttctcatcatccgcatcaggatacagcc 520
                ||||||| ||||||||||| ||||| || |||||||| || || || ||||| |||||||
Sbjct: 22997137 aaatgctgctggctgtggaaggagggggctttttctcgtcgtcggcttcagggtacagcc 22997196

                          
Query: 521      atggccttgc 530
                ||||||||||
Sbjct: 22997197 atggccttgc 22997206



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 33       ctcctcgcccgccgccgtcgccga 56
                |||||||||||||||| |||||||
Sbjct: 41947070 ctcctcgcccgccgccttcgccga 41947093



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 41      ccgccgccgtcgccgacgag 60
               ||||||||||||||||||||
Sbjct: 4414423 ccgccgccgtcgccgacgag 4414442
to top
>dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0415C01
          Length = 138701

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                         
Query: 461   aaatgctactggctgtggagggaggaggttttttctcatcatccgcatcaggatacagcc 520
             ||||||| ||||||||||| ||||| || |||||||| || || || ||||| |||||||
Sbjct: 67543 aaatgctgctggctgtggaaggagggggctttttctcgtcgtcggcttcagggtacagcc 67602

                       
Query: 521   atggccttgc 530
             ||||||||||
Sbjct: 67603 atggccttgc 67612
to top
>ref|NM_192570.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 615

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                       
Query: 463 atgctactggctgtggagggaggaggttttttctcatcatccgcatcaggatacagccat 522
           ||||| ||||||||||| ||||| || |||||||| || || || ||||| |||||||||
Sbjct: 1   atgctgctggctgtggaaggagggggctttttctcgtcgtcggcttcagggtacagccat 60

                   
Query: 523 ggccttgc 530
           ||||||||
Sbjct: 61  ggccttgc 68
to top
>emb|AL929533.12| Zebrafish DNA sequence from clone DKEY-18E17 in linkage group 5, complete
              sequence
          Length = 251370

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 390    gttttggtggtctggtggtcttgattgagtt 420
              ||||| ||| |||||||||||||||||||||
Sbjct: 121808 gttttagtgttctggtggtcttgattgagtt 121838
to top
>ref|XM_481036.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1710

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 50  tcgccgacgagcctcctcctcc 71
           ||||||||||||||||||||||
Sbjct: 520 tcgccgacgagcctcctcctcc 541
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 50      tcgccgacgagcctcctcctcc 71
               ||||||||||||||||||||||
Sbjct: 9394369 tcgccgacgagcctcctcctcc 9394390



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 33      ctcctcgcccgccgccgtcgccga 56
               ||||||| ||||||||||||||||
Sbjct: 8493678 ctcctcgtccgccgccgtcgccga 8493655
to top
>dbj|AP004155.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1112_D12
          Length = 97572

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 50    tcgccgacgagcctcctcctcc 71
             ||||||||||||||||||||||
Sbjct: 18960 tcgccgacgagcctcctcctcc 18981
to top
>dbj|AP004013.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1575_B01
          Length = 86158

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 50    tcgccgacgagcctcctcctcc 71
             ||||||||||||||||||||||
Sbjct: 70598 tcgccgacgagcctcctcctcc 70619
to top
>gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012G21,
              complete sequence
          Length = 135750

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 35     cctcgcccgccgccgtcgccg 55
              |||||||||||||||||||||
Sbjct: 111010 cctcgcccgccgccgtcgccg 111030
to top
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 38      cgcccgccgccgtcgccgacg 58
               |||||||||||||||||||||
Sbjct: 1546203 cgcccgccgccgtcgccgacg 1546223
to top
>emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 on chromosome 20p12.3-13
            Contains STS and GSSs, complete sequence
          Length = 137739

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 323  cagagaattataaacaaagca 343
            |||||||||||||||||||||
Sbjct: 6690 cagagaattataaacaaagca 6670
to top
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 38      cgcccgccgccgtcgccgacg 58
               |||||||||||||||||||||
Sbjct: 2880948 cgcccgccgccgtcgccgacg 2880968
to top
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 38     cgcccgccgccgtcgccgacg 58
              |||||||||||||||||||||
Sbjct: 357200 cgcccgccgccgtcgccgacg 357180
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 44       ccgccgtcgccgacgagcctcctcctccg 72
                |||||| ||||| ||||||||||||||||
Sbjct: 22953620 ccgccggcgccgccgagcctcctcctccg 22953648
to top
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016G10
          Length = 143211

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 44    ccgccgtcgccgacgagcctcctcctccg 72
             |||||| ||||| ||||||||||||||||
Sbjct: 73422 ccgccggcgccgccgagcctcctcctccg 73450
to top
>dbj|AK099683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071I02, full
           insert sequence
          Length = 4765

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 44  ccgccgtcgccgacgagcctcctcctccg 72
           |||||| ||||| ||||||||||||||||
Sbjct: 126 ccgccggcgccgccgagcctcctcctccg 154
to top
>gb|AY103597.1| Zea mays PCO084307 mRNA sequence
          Length = 923

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 35  cctcgcccgccgccgtcgccg 55
           |||||||||||||||||||||
Sbjct: 174 cctcgcccgccgccgtcgccg 194
to top
>emb|AL935160.11| Zebrafish DNA sequence from clone CH211-184C7 in linkage group 12,
             complete sequence
          Length = 140401

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 307   aggaactttctgagaccagag 327
             |||||||||||||||||||||
Sbjct: 97134 aggaactttctgagaccagag 97154
to top
>emb|CR456684.10| Zebrafish DNA sequence from clone DKEY-46I8 in linkage group 12, complete
              sequence
          Length = 262809

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 307    aggaactttctgagaccagag 327
              |||||||||||||||||||||
Sbjct: 138308 aggaactttctgagaccagag 138288
to top
>emb|AL731839.13| Mouse DNA sequence from clone RP23-76O22 on chromosome X, complete
             sequence
          Length = 228355

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 454   gaagctgaaatgctactggct 474
             |||||||||||||||||||||
Sbjct: 94494 gaagctgaaatgctactggct 94474
to top
>ref|XM_550423.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 717

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 41 ccgccgccgtcgccgacgag 60
          ||||||||||||||||||||
Sbjct: 8  ccgccgccgtcgccgacgag 27
to top
>ref|XM_480900.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1044

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 33 ctcctcgcccgccgccgtcgccga 56
          ||||||| ||||||||||||||||
Sbjct: 54 ctcctcgtccgccgccgtcgccga 77
to top
>ref|XM_473672.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1806

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 40 cccgccgccgtcgccgacga 59
          ||||||||||||||||||||
Sbjct: 32 cccgccgccgtcgccgacga 13
to top
>gb|AC116075.5| Rattus norvegicus 6 BAC CH230-139H23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 153441

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 41    ccgccgccgtcgccgacgagcctcctcctccg 72
             ||||||||| ||||| || |||||||||||||
Sbjct: 30926 ccgccgccgccgccgccgcgcctcctcctccg 30895
to top
>ref|XM_368420.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
            (MG00824.4) partial mRNA
          Length = 1926

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   gcctcctcctccgtctcggg 79
            ||||||||||||||||||||
Sbjct: 1814 gcctcctcctccgtctcggg 1795
to top
>gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1119_H02,
             complete sequence
          Length = 138584

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 41    ccgccgccgtcgccgacgagcctcctcc 68
             |||||||||||| |||||| ||||||||
Sbjct: 52941 ccgccgccgtcgacgacgaccctcctcc 52914
to top
>gb|AC147154.4| Pan troglodytes BAC clone CH251-175E24 from Y, complete sequence
          Length = 157260

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 326    agaattataaacaaagcatattaa 349
              ||||||| ||||||||||||||||
Sbjct: 137989 agaattaaaaacaaagcatattaa 138012
to top
>gb|AC147120.2| Pan troglodytes BAC clone CH251-531L7 from Y, complete sequence
          Length = 175034

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 326    agaattataaacaaagcatattaa 349
              ||||||| ||||||||||||||||
Sbjct: 155756 agaattaaaaacaaagcatattaa 155779
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 33       ctcctcgcccgccgccgtcgccga 56
                ||||||||||||||||| ||||||
Sbjct: 14037402 ctcctcgcccgccgccggcgccga 14037379
to top
>gb|AC137597.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0022F22, from chromosome 3, complete sequence
          Length = 144268

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    ctcctcgcccgccgccgtcgccga 56
             ||||||||||||||||| ||||||
Sbjct: 47081 ctcctcgcccgccgccggcgccga 47058
to top
>gb|AC141111.25| Medicago truncatula clone mth2-20c17, complete sequence
          Length = 113836

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 385   aaattgttttggtggtctgg 404
             ||||||||||||||||||||
Sbjct: 27541 aaattgttttggtggtctgg 27522
to top
>gb|AC146631.27| Medicago truncatula clone mth2-7g1, complete sequence
          Length = 132372

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 385   aaattgttttggtggtctgg 404
             ||||||||||||||||||||
Sbjct: 37034 aaattgttttggtggtctgg 37015
to top
>emb|AL356963.17| Human DNA sequence from clone RP11-535A9 on chromosome 6, complete
             sequence
          Length = 91469

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 95    cccgcgcccctggaccggccctcc 118
             ||||||||||||| ||||||||||
Sbjct: 33105 cccgcgcccctggcccggccctcc 33128
to top
>emb|AL357332.11| Human DNA sequence from clone RP11-96C13 on chromosome 6, complete
             sequence
          Length = 73991

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   ttctgtaccaagtgcctcgc 172
             ||||||||||||||||||||
Sbjct: 42458 ttctgtaccaagtgcctcgc 42439
to top
>emb|X54106.1|PHADH1 P.hybrida ADH1 gene for alcohol dehydrogenase 1
          Length = 4672

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 418  gttgtctgttagattcagtt 437
            ||||||||||||||||||||
Sbjct: 4282 gttgtctgttagattcagtt 4301
to top
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     gcccgccgccgtcgccgacg 58
              ||||||||||||||||||||
Sbjct: 247425 gcccgccgccgtcgccgacg 247444
to top
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
             complete sequence
          Length = 160484

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    cgtcgccgacgagcctcctcctcc 71
             ||||||||||||||| ||||||||
Sbjct: 84800 cgtcgccgacgagccgcctcctcc 84777
to top
>emb|AL603889.5| Mouse DNA sequence from clone RP23-407M20 on chromosome 11, complete
              sequence
          Length = 145052

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 441    ggtggctggatgagaagctg 460
              ||||||||||||||||||||
Sbjct: 114303 ggtggctggatgagaagctg 114284
to top
>emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013K16,
             complete sequence
          Length = 145739

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    cccgccgccgtcgccgacga 59
             ||||||||||||||||||||
Sbjct: 53427 cccgccgccgtcgccgacga 53446
to top
>dbj|BS000678.1| Pan troglodytes chromosome Y clone: PTB-448K11, complete sequence
          Length = 195684

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 326    agaattataaacaaagcatattaa 349
              ||||||| ||||||||||||||||
Sbjct: 172206 agaattaaaaacaaagcatattaa 172183
to top
>dbj|BS000682.1| Pan troglodytes chromosome Y clone: PTB-178C02, complete sequence
          Length = 222422

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 326    agaattataaacaaagcatattaa 349
              ||||||| ||||||||||||||||
Sbjct: 174079 agaattaaaaacaaagcatattaa 174056
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 108     accggccctccactcagctc 127
               ||||||||||||||||||||
Sbjct: 5199017 accggccctccactcagctc 5199036
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 326      agaattataaacaaagcatattaa 349
                ||||||| ||||||||||||||||
Sbjct: 12674833 agaattaaaaacaaagcatattaa 12674856



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 326     agaattataaacaaagcatattaa 349
               ||||||| ||||||||||||||||
Sbjct: 5223782 agaattaaaaacaaagcatattaa 5223759



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 326     agaattataaacaaagcatattaa 349
               ||||||| ||||||||||||||||
Sbjct: 1568521 agaattaaaaacaaagcatattaa 1568498
to top
>gb|AC106898.5| Homo sapiens BAC clone RP11-310K19 from 4, complete sequence
          Length = 171846

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   ttctgagaccagagaattat 333
             ||||||||||||||||||||
Sbjct: 20278 ttctgagaccagagaattat 20259
to top
>gb|AC068721.4| Homo sapiens BAC clone RP11-545L5 from 4, complete sequence
          Length = 177270

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 314    ttctgagaccagagaattat 333
              ||||||||||||||||||||
Sbjct: 167566 ttctgagaccagagaattat 167547
to top
>gb|AC159024.2| Pan troglodytes BAC clone CH251-479P21 from chromosome y, complete
             sequence
          Length = 186141

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 326   agaattataaacaaagcatattaa 349
             ||||||| ||||||||||||||||
Sbjct: 42659 agaattaaaaacaaagcatattaa 42682
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 48       cgtcgccgacgagcctcctcctcc 71
                ||||||||||||||| ||||||||
Sbjct: 31102719 cgtcgccgacgagccgcctcctcc 31102696



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 40       cccgccgccgtcgccgacga 59
                ||||||||||||||||||||
Sbjct: 29550738 cccgccgccgtcgccgacga 29550757
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 33       ctcctcgcccgccgccgtcgccga 56
                ||||||||||||||||| ||||||
Sbjct: 14032377 ctcctcgcccgccgccggcgccga 14032354
to top
>gb|AC154111.2| Pan troglodytes BAC clone CH251-110D7 from chromosome y, complete
            sequence
          Length = 185601

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 326  agaattataaacaaagcatattaa 349
            ||||||| ||||||||||||||||
Sbjct: 3552 agaattaaaaacaaagcatattaa 3575
to top
>gb|AC151056.2| Pan troglodytes BAC clone CH251-310D9 from chromosome y, complete
             sequence
          Length = 135628

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 326   agaattataaacaaagcatattaa 349
             ||||||| ||||||||||||||||
Sbjct: 65571 agaattaaaaacaaagcatattaa 65548
to top
>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431G06
          Length = 140466

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 33    ctcctcgcccgccgccgtcgccga 56
             |||||||||||||||| |||||||
Sbjct: 49147 ctcctcgcccgccgccttcgccga 49170
to top
>dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0489A01
          Length = 137174

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    ccgccgccgtcgccgacgag 60
             ||||||||||||||||||||
Sbjct: 74505 ccgccgccgtcgccgacgag 74524
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 41      ccgccgccgtcgccgacgag 60
               ||||||||||||||||||||
Sbjct: 8735182 ccgccgccgtcgccgacgag 8735201



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 36      ctcgcccgccgccgtcgccg 55
               ||||||||||||||||||||
Sbjct: 3171619 ctcgcccgccgccgtcgccg 3171600
to top
>ref|XM_234514.3| PREDICTED: Rattus norvegicus B-cell leukemia/lymphoma 11B
           (predicted) (Bcl11b_predicted), mRNA
          Length = 5714

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 41  ccgccgccgtcgccgacgagcctcctcctccg 72
           ||||||||| ||||| || |||||||||||||
Sbjct: 161 ccgccgccgccgccgccgcgcctcctcctccg 130
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     cgccgccgtcgccgacgagc 61
              ||||||||||||||||||||
Sbjct: 695871 cgccgccgtcgccgacgagc 695890
to top
>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0087F21
          Length = 187401

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 33   ctcctcgcccgccgccgtcgccga 56
            ||||||| ||||||||||||||||
Sbjct: 5589 ctcctcgtccgccgccgtcgccga 5566
to top
>gb|AE004988.1| Halobacterium sp. NRC-1 section 19 of 170 of the complete genome
          Length = 12549

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   ccgccgccgtcgccgacgag 60
            ||||||||||||||||||||
Sbjct: 2670 ccgccgccgtcgccgacgag 2651
to top
>dbj|AP004657.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0031C02
          Length = 138843

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    ctcctcgcccgccgccgtcgccga 56
             ||||||| ||||||||||||||||
Sbjct: 23221 ctcctcgtccgccgccgtcgccga 23198
to top
>dbj|AK104427.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-A04,
          full insert sequence
          Length = 1207

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 48 cgtcgccgacgagcctcctcctcc 71
          ||||||||||||||| ||||||||
Sbjct: 70 cgtcgccgacgagccgcctcctcc 93
to top
>dbj|AK103548.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132E24, full
           insert sequence
          Length = 2145

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  cccgccgccgtcgccgacga 59
           ||||||||||||||||||||
Sbjct: 116 cccgccgccgtcgccgacga 97
to top
>dbj|AK103104.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118O17, full
           insert sequence
          Length = 1876

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 41  ccgccgccgtcgccgacgagcctcctcc 68
           |||||||||||| |||||| ||||||||
Sbjct: 109 ccgccgccgtcgacgacgaccctcctcc 136
to top
>dbj|AK100817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122D13, full
           insert sequence
          Length = 2242

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 41  ccgccgccgtcgccgacgagcctcctcc 68
           |||||||||||| |||||| ||||||||
Sbjct: 104 ccgccgccgtcgacgacgaccctcctcc 131
to top
>emb|AJ323167.1|HSA323167 Homo sapiens genomic sequence surrounding NotI site, clone NB1-030R
          Length = 404

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 64  cctcctccgtctcggggcgc 83
           ||||||||||||||||||||
Sbjct: 302 cctcctccgtctcggggcgc 321
to top
>dbj|AK099008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120E14,
          full insert sequence
          Length = 1218

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 48 cgtcgccgacgagcctcctcctcc 71
          ||||||||||||||| ||||||||
Sbjct: 43 cgtcgccgacgagccgcctcctcc 66
to top
>dbj|AK070047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038J20,
          full insert sequence
          Length = 3913

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 33 ctcctcgcccgccgccgtcgccga 56
          |||||||||||||||| |||||||
Sbjct: 30 ctcctcgcccgccgccttcgccga 53
to top
>gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome
          Length = 791654

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 376    tgctactacaaattgttttg 395
              ||||||||||||||||||||
Sbjct: 469471 tgctactacaaattgttttg 469490
to top
>gb|AC151971.3| Mus musculus BAC clone RP24-282C4 from 9, complete sequence
          Length = 179607

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     cctcgcccgccgccgtcgcc 54
              ||||||||||||||||||||
Sbjct: 118109 cctcgcccgccgccgtcgcc 118128
to top
>dbj|AK062527.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-D11,
          full insert sequence
          Length = 774

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 33 ctcctcgcccgccgccgtcgccga 56
          ||||||||||||||||| ||||||
Sbjct: 39 ctcctcgcccgccgccggcgccga 62
to top
>dbj|AK060707.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H03,
          full insert sequence
          Length = 1262

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 48 cgtcgccgacgagcctcctcctcc 71
          ||||||||||||||| ||||||||
Sbjct: 68 cgtcgccgacgagccgcctcctcc 91
to top
>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete
             sequence
          Length = 94152

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    cctcgcccgccgccgtcgcc 54
             ||||||||||||||||||||
Sbjct: 41115 cctcgcccgccgccgtcgcc 41134
to top
>gb|AC163729.5| Pan troglodytes BAC clone CH251-1018P19 from chromosome y, complete
              sequence
          Length = 196073

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 326    agaattataaacaaagcatattaa 349
              ||||||| ||||||||||||||||
Sbjct: 132212 agaattaaaaacaaagcatattaa 132235
to top
>dbj|AB055105.1| Oryza sativa (japonica cultivar-group) V-ATPase B pseudogene for
           vacuolar ATPase B subunit
          Length = 4116

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 41  ccgccgccgtcgccgacgagcctcctcc 68
           |||||||||||| |||||| ||||||||
Sbjct: 182 ccgccgccgtcgacgacgaccctcctcc 209
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 41      ccgccgccgtcgccgacgagcctc 64
               |||||||||||||||| |||||||
Sbjct: 3123175 ccgccgccgtcgccgaagagcctc 3123198
to top
>gb|AC003047.1|AC003047 Homo sapiens Xp22 Cosmid U152D7 (Lawrence Livermore human cosmid
             library) complete sequence
          Length = 39213

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    cctcctccgtctcggggcgc 83
             ||||||||||||||||||||
Sbjct: 28575 cctcctccgtctcggggcgc 28556
to top
>gb|AC090481.9| Homo sapiens Xp BAC RP11-8H7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 44400

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    cctcctccgtctcggggcgc 83
             ||||||||||||||||||||
Sbjct: 31739 cctcctccgtctcggggcgc 31720


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,106,053
Number of Sequences: 3902068
Number of extensions: 6106053
Number of successful extensions: 148043
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145835
Number of HSP's gapped (non-prelim): 2208
length of query: 557
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 534
effective length of database: 17,143,297,704
effective search space: 9154520973936
effective search space used: 9154520973936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top