Clone Information

BLAST Search Result

Clone Name	bart36b01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TAR1_KLULA (Q6CQE5) Protein TAR1	66	6e-11
2	TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to riboso...	60	3e-09
3	ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related home...	34	0.24
4	ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related home...	34	0.24
5	EDF1_BRARE (Q6PBY3) Endothelial differentiation-related factor 1...	33	0.54
6	CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Conta...	32	0.92
7	CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain...	32	0.92
8	CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)	32	1.2
9	COLQ_TORMA (Q03637) Acetylcholinesterase collagenic tail peptide...	32	1.6
10	CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor	32	1.6
11	COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morpholog...	31	2.1
12	CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (End...	31	2.1
13	CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta...	31	2.1
14	CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor	31	2.7
15	CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor	31	2.7
16	ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)	31	2.7
17	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	31	2.7
18	ELN_BOVIN (P04985) Elastin precursor (Tropoelastin)	31	2.7
19	CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)	31	2.7
20	EMID2_HUMAN (Q96A83) Collagen alpha-1(XXVI) chain precursor (EMI...	31	2.7
21	CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag...	30	3.5
22	ARX_BRARE (O42115) Aristaless-related homeobox protein (ARX)	30	3.5
23	PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-spe...	30	3.5
24	SAFB2_HUMAN (Q14151) Scaffold attachment factor B2	30	4.6
25	PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regula...	30	4.6
26	DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)	30	4.6
27	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	30	4.6
28	CNO_HUMAN (Q9NUP1) Cappuccino protein homolog	30	4.6
29	ZN318_MOUSE (Q99PP2) Zinc finger protein 318 (Testicular zinc fi...	30	4.6
30	PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regu...	30	4.6
31	PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regu...	30	4.6
32	EDF1_XENLA (Q6GPQ6) Endothelial differentiation-related factor 1...	30	4.6
33	CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (End...	30	4.6
34	RL15_STAEQ (Q5HM18) 50S ribosomal protein L15	30	4.6
35	B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band...	30	4.6
36	COL2_CAEEL (P17656) Cuticle collagen 2 precursor	30	6.0
37	CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor	30	6.0
38	CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor	30	6.0
39	PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regu...	30	6.0
40	CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor	30	6.0
41	CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor	30	6.0
42	EDF1_CHICK (Q5ZMC0) Endothelial differentiation-related factor 1...	30	6.0
43	COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Conta...	30	6.0
44	CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor	30	6.0
45	VNUA_PRVKA (P33485) Probable nuclear antigen	29	7.8
46	OTO1_ONCKE (P83371) Otolin-1 precursor	29	7.8
47	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	29	7.8
48	PKHA4_RAT (P60669) Pleckstrin homology domain-containing family ...	29	7.8
49	PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-s...	29	7.8
50	IE63_SHV21 (P13199) 52 kDa immediate-early phosphoprotein	29	7.8
51	CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor	29	7.8
52	CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain	29	7.8
53	CUC2C_HAECO (P16252) Cuticle collagen 2C (Fragment)	29	7.8
54	CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragme...	29	7.8

>TAR1_KLULA (Q6CQE5) Protein TAR1|
          Length = 109

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 33/63 (52%), Positives = 38/63 (60%)
 Frame = -1

Query: 217 TCSLSVSRLYLALDGVYRPIWAAFPNNPTR*PRLVGRQGPGRTGLSPSQAPLSRGLGPGP 38
           TCSLSVSR YLALDG+Y P+ AAFPNN TR         P  TG SPS    S+    GP
Sbjct: 30  TCSLSVSRQYLALDGIYHPLRAAFPNNSTRRKHFTNNWDPRHTGFSPSMTSCSKEHRQGP 89

Query: 37  SLR 29
           + +
Sbjct: 90  ATK 92

to top

>TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA|
           protein 1)
          Length = 124

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 30/54 (55%), Positives = 34/54 (62%)
 Frame = -1

Query: 217 TCSLSVSRLYLALDGVYRPIWAAFPNNPTR*PRLVGRQGPGRTGLSPSQAPLSR 56
           TCSLSVSR YLALDG+Y P+ AAFPNN T        + P  TG SPS    S+
Sbjct: 45  TCSLSVSRQYLALDGIYHPLRAAFPNNSTLRRHFTKNRTPRHTGFSPSMTSCSK 98

to top

>ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related homeobox)|
          Length = 564

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -2

Query: 123 RASWGDRVRAGRGSHPPRRPFPGDL 49
           RA W  R +AG  +HPP  PFPG L
Sbjct: 382 RAKWRKREKAGAQTHPPGLPFPGPL 406

to top

>ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related homeobox)|
          Length = 562

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -2

Query: 123 RASWGDRVRAGRGSHPPRRPFPGDL 49
           RA W  R +AG  +HPP  PFPG L
Sbjct: 380 RAKWRKREKAGAQTHPPGLPFPGPL 404

to top

>EDF1_BRARE (Q6PBY3) Endothelial differentiation-related factor 1 homolog|
           (EDF-1)
          Length = 146

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +2

Query: 389 DWEPVVLRRAKTKAADLKSAKAVNQALRTGAPVET 493
           DW+ V + R K  AA  KS +AV  A R G  VET
Sbjct: 5   DWDTVTVLRKKGSAAQSKSKQAVTAAQRKGEAVET 39

to top

>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1459

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 22/64 (34%), Positives = 25/64 (39%)
 Frame = +1

Query: 19   GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRLNTGE 198
            G A    DR +    GAPG    P  P P  P G   + G  G Q    G + P    G 
Sbjct: 1022 GAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQ----GPMGPSGPAGA 1077

Query: 199  RPIA 210
            R IA
Sbjct: 1078 RGIA 1081



 Score = 30.4 bits (67), Expect = 3.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 146 PKQPDSLTAPRGATGS-GPDGALTLPGA 66
           P+ P  +T P+GA G+ GP GA   PGA
Sbjct: 846 PQGPTGVTGPKGARGAQGPPGATGFPGA 873

to top

>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1419

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 22/64 (34%), Positives = 25/64 (39%)
 Frame = +1

Query: 19   GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRLNTGE 198
            G A    DR +    GAPG    P  P P  P G   + G  G Q    G + P    G 
Sbjct: 982  GAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQ----GPMGPSGPAGA 1037

Query: 199  RPIA 210
            R IA
Sbjct: 1038 RGIA 1041



 Score = 30.4 bits (67), Expect = 3.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 146 PKQPDSLTAPRGATGS-GPDGALTLPGA 66
           P+ P  +T P+GA G+ GP GA   PGA
Sbjct: 806 PQGPTGVTGPKGARGAQGPPGATGFPGA 833

to top

>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)|
          Length = 779

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +1

Query: 19  GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLG 147
           G   +  DR +    GAPG   AP  P PV P G   + G  G
Sbjct: 590 GSPGAKGDRGETGPAGAPGPPGAPGAPGPVGPAGKSGDRGETG 632

to top

>COLQ_TORMA (Q03637) Acetylcholinesterase collagenic tail peptide precursor|
           (AChE Q subunit)
          Length = 471

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = +1

Query: 61  KGAPGRVRAPSG-------PDPVAPRGAVNESGCLGMQPKSGGRLRPRLNTGER 201
           KG PG VR P G       P P+ PRG   + G  G+ P + G + P+  TG++
Sbjct: 150 KGRPG-VRGPRGMPGSPCSPGPIGPRGEKGDIGLTGL-PGARGPMGPKGLTGQK 201

to top

>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 21/51 (41%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
 Frame = +1

Query: 64   GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG-----GRLRPRLNTGER 201
            GA G   A   P P  PRG V   G  G    SG     G   PR N GER
Sbjct: 1121 GAAGHQGAVGSPGPAGPRGPVGPHGPPGKDGSSGHPGPIGPPGPRGNRGER 1171



 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = +1

Query: 19   GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 165
            G      DR +    GAPG    P  P PV P G   + G  G    SG
Sbjct: 1025 GSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGKNGDRGETGPAGPSG 1073

to top

>COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morphology protein 4)|
          Length = 299

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +1

Query: 64  GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRLNTGERPIANKY 219
           G PG   +P  P P  P G   + G  G  P + G   P  + GER I  KY
Sbjct: 234 GQPGADGSPGQPGPKGPNGPDGQPGADG-NPGAPGPAGPPGSPGERGICPKY 284

to top

>CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 699

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = +1

Query: 1   PSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGA---VNESGCLGMQPKSGGR 171
           P E   G+  SA         G+PG    P  P P  P GA   ++E+G  G+   +GG 
Sbjct: 488 PGEGKVGEPGSAGPTGPPGVPGSPGLTGPPGPPGPPGPPGAPGALDETGIAGLHLPNGGV 547

Query: 172 LRPRLNTGERP 204
               L  G +P
Sbjct: 548 EGAVLGKGGKP 558

to top

>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1418

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = +1

Query: 19   GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 165
            G A    DR +    GAPG    P  P P  P G   + G  G Q   G
Sbjct: 981  GAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMG 1029



 Score = 30.4 bits (67), Expect = 3.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 146 PKQPDSLTAPRGATGS-GPDGALTLPGA 66
           P+ P  +T P+GA G+ GP GA   PGA
Sbjct: 805 PQGPTGVTGPKGARGAQGPPGATGFPGA 832

to top

>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 21/51 (41%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
 Frame = +1

Query: 64   GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG-----GRLRPRLNTGER 201
            GA G   A   P P  PRG V   G  G    SG     G   PR N GER
Sbjct: 1121 GAAGHQGAIGSPGPAGPRGPVGPHGPPGKDGTSGHPGPIGPPGPRGNRGER 1171



 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = +1

Query: 19   GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 165
            G      DR +    GAPG    P  P PV P G   + G  G    SG
Sbjct: 1025 GSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGKSGDRGETGPAGPSG 1073

to top

>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +1

Query: 19   GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 165
            G   +  DR +    G PG   AP  P PV P G   + G  G    +G
Sbjct: 1028 GSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAG 1076

to top

>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)|
          Length = 2469

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = +1

Query: 19   GDASSATDRAQVPWKGAPGRV----RAPSGPD--PVAPRGAVNESGCLGMQPKSGGRLRP 180
            G++S+   + QVP       V    RAPS PD  P  PR     S  L  +PK   + +P
Sbjct: 2327 GESSTKRKKGQVPGPARSESVGSFGRAPSAPDKPPRTPRKQATPSRVLPTKPKPNSQNKP 2386

Query: 181  R 183
            R
Sbjct: 2387 R 2387

to top

>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +1

Query: 19   GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 165
            G A    DR +    G PG   AP  P PV P G   + G  G    +G
Sbjct: 1017 GAAGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAG 1065

to top

>ELN_BOVIN (P04985) Elastin precursor (Tropoelastin)|
          Length = 747

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -3

Query: 230 FPSRYLFAIGLSPVFSLGRSLPPDLGCIPKQPDSLTAPRGATGSGPDGAL--TLPGAP 63
           F +R    IG  P F LG    P +G     P +  A     G+G  GAL   +PGAP
Sbjct: 408 FGARGAVGIGGIPTFGLGPGGFPGIGDAAAAPAAAAAKAAKIGAGGVGALGGVVPGAP 465

to top

>CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)|
          Length = 623

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -3

Query: 203 GLSPVFSLGRSLPPDLGCIPKQPDSLTAPRGATGSGPDGALTLPGAP 63
           G+SP    G   PP L   P +P  +  P GATG  P G +  PG P
Sbjct: 151 GISPPGLFGERGPPGL---PGRPGPV-GPMGATGRAPKGDIPDPGPP 193

to top

>EMID2_HUMAN (Q96A83) Collagen alpha-1(XXVI) chain precursor (EMI|
           domain-containing protein 2) (Emu2 protein) (Emilin and
           multimerin domain-containing protein 2)
          Length = 441

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +1

Query: 1   PSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGR 171
           P++  +GD+  A+        G PG    P  P P  PRG     G  G Q  +G R
Sbjct: 281 PTDKDNGDSRLASAIVDTVLAGVPGPRGPPGPPGPPGPRGPPGPPGTPGSQGLAGER 337

to top

>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +1

Query: 19  GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLG 147
           G A  A DR +    G+PG    P GP P    G   E G  G
Sbjct: 620 GPAGPAGDRGEPGPSGSPGLQGLPGGPGPAGENGKPGEPGPKG 662

to top

>ARX_BRARE (O42115) Aristaless-related homeobox protein (ARX)|
          Length = 453

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 123 RASWGDRVRAGRGSHPPRRPFPGDL 49
           RA W  R +AG  +HP   PFPG L
Sbjct: 267 RAKWRKREKAGVQAHPTGLPFPGPL 291

to top

>PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2124

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +1

Query: 22   DASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRLNTGER 201
            ++ SA+   ++PW   P   R PSG + +    + + +G L   P SGG +     +G  
Sbjct: 864  ESGSASGDGEIPWSSTPTVDRLPSGGESLEGSASASGTGDLSGLP-SGGEITETSASGTE 922

Query: 202  PIA 210
             I+
Sbjct: 923  EIS 925

to top

>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2|
          Length = 953

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +1

Query: 28   SSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRP 180
            + A  R    W+G    +  PSGP  +A RG V   G       S G + P
Sbjct: 868  AGAASREHARWQGGERGLSGPSGPGHMASRGGVAGRGGFAQGGHSQGHVVP 918

to top

>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
           (Protein FB19)
          Length = 925

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/46 (41%), Positives = 19/46 (41%)
 Frame = +3

Query: 39  GPGPSPLERGAWEGESPVRPGPCRPTRRGQRVGLFGNAAQIGR*TP 176
           GPGP P  RG   G     P P  P  RG R G  G     GR  P
Sbjct: 700 GPGPGPYHRGR-GGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGP 744

to top

>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)|
          Length = 302

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/52 (36%), Positives = 21/52 (40%)
 Frame = +1

Query: 64  GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRLNTGERPIANKY 219
           G PG    P  P P  P G   + G  G  P   G + P    GER I  KY
Sbjct: 237 GQPGNDGTPGQPGPKGPPGPDGKPGADG-NPGQPGPVGPPGTPGERGICPKY 287

to top

>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 64  GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRP 180
           G PG +     P P  PRGA    G  G  P + GR+ P
Sbjct: 837 GPPGPIGNVGAPGPKGPRGAAGPPGATGF-PGAAGRVGP 874



 Score = 29.6 bits (65), Expect = 6.0
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +1

Query: 19   GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 165
            G   +  DR +    G PG   AP  P PV P G   + G  G    +G
Sbjct: 1017 GAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAG 1065

to top

>CNO_HUMAN (Q9NUP1) Cappuccino protein homolog|
          Length = 217

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 161 DLGCIPKQPDSLTAPRGATGSGPDGALTLPGAPFQGTWARSVAEDASP 18
           D G +P+       P+GA  SG  G ++   +   G W    AED +P
Sbjct: 7   DGGALPEGLAEEAEPQGAAWSGDSGTVSQSHSSASGPWEDEGAEDGAP 54

to top

>ZN318_MOUSE (Q99PP2) Zinc finger protein 318 (Testicular zinc finger protein)|
          Length = 2025

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +1

Query: 16  SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRLNTG 195
           S D+  +T++ +     +P +  +PS          +NE  C+   P S   L+P +   
Sbjct: 803 SNDSKESTEKPEKEKSKSPEKELSPSNSSSSNKESKMNEKSCI-KSPSSTESLQPTVKQS 861

Query: 196 ERPIA 210
           ++P+A
Sbjct: 862 DQPVA 866

to top

>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
           (Protein FB19)
          Length = 940

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/46 (41%), Positives = 19/46 (41%)
 Frame = +3

Query: 39  GPGPSPLERGAWEGESPVRPGPCRPTRRGQRVGLFGNAAQIGR*TP 176
           GPGP P  RG   G     P P  P  RG R G  G     GR  P
Sbjct: 697 GPGPGPYHRGR-GGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGP 741

to top

>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (Phosphatase 1 nuclear targeting subunit) (MHC class
           I region proline-rich protein CAT53) (FB19 protein)
           (PP1-binding protein of 114 kDa) (p99)
          Length = 940

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/46 (41%), Positives = 19/46 (41%)
 Frame = +3

Query: 39  GPGPSPLERGAWEGESPVRPGPCRPTRRGQRVGLFGNAAQIGR*TP 176
           GPGP P  RG   G     P P  P  RG R G  G     GR  P
Sbjct: 697 GPGPGPYHRGR-GGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGP 741

to top

>EDF1_XENLA (Q6GPQ6) Endothelial differentiation-related factor 1 homolog|
           (EDF-1)
          Length = 147

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 389 DWEPV-VLRRAKTKAADLKSAKAVNQALRTGAPVET 493
           DW+ V VLR+    AA  KS +A+  A R G  VET
Sbjct: 5   DWDTVTVLRKKGPTAAQAKSKQAITAAQRRGEEVET 40

to top

>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 703

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = +1

Query: 1   PSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGA---VNESGCLGMQPKSGGR 171
           P E  +G+  +A         G+PG    P  P P  P GA    +E+G  G+   +GG 
Sbjct: 492 PGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGV 551

Query: 172 LRPRLNTGERP 204
               L  G +P
Sbjct: 552 EGAVLGKGGKP 562

to top

>RL15_STAEQ (Q5HM18) 50S ribosomal protein L15|
          Length = 146

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 61  KGAPG--RVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRLNTGERPI 207
           K A G  RVR   G       G  +  G  G + +SGG+LRP    G+ P+
Sbjct: 7   KAAEGSRRVRNRVGRGAATGNGKTSGRGQKGQKARSGGKLRPGFEGGQLPL 57

to top

>B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 179 GRSLPPDLGCIPK--QPDSLTAPRGATGSGPDGALTLPGAPFQG 54
           GR LPP LG  PK  Q  +L     A G+  D  L   G PF G
Sbjct: 637 GRLLPPGLGLEPKSAQDKALLQMVEAAGAAEDDPLRRTGRPFGG 680

to top

>COL2_CAEEL (P17656) Cuticle collagen 2 precursor|
          Length = 301

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +1

Query: 64  GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRP 180
           G PG    PSGP P  P G    +G  G     GG   P
Sbjct: 171 GNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEP 209

to top

>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +1

Query: 19   GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 165
            G   +  DR +    G PG   AP  P PV P G   + G  G    +G
Sbjct: 1017 GAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAG 1065

to top

>CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor|
          Length = 1019

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 21/51 (41%), Positives = 22/51 (43%)
 Frame = +1

Query: 19  GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGR 171
           GDA    D  Q   KG PGR     G     PRGA  E G  G +   GGR
Sbjct: 493 GDAGPRGDSGQPGPKGDPGR----PGFSYPGPRGAPGEKGEPGPRGPEGGR 539

to top

>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
          Length = 940

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 18/46 (39%), Positives = 18/46 (39%)
 Frame = +3

Query: 39  GPGPSPLERGAWEGESPVRPGPCRPTRRGQRVGLFGNAAQIGR*TP 176
           GPGP P  RG         P P  P  RG R G  G     GR  P
Sbjct: 697 GPGPGPYHRGRGGRGGNEPPPPPPPPFRGARGGRSGGGPPNGRGGP 742

to top

>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor|
          Length = 1460

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +1

Query: 19   GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 165
            G      DR +    G PG   AP  P PV P G   + G  G    +G
Sbjct: 1024 GSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAG 1072

to top

>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +1

Query: 64  GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRL 174
           GAPG    P  P PV   G    + CLG    +  RL
Sbjct: 643 GAPGEAGRPGRPGPVGLPGFCEPAACLGASAYTSARL 679

to top

>EDF1_CHICK (Q5ZMC0) Endothelial differentiation-related factor 1 homolog|
           (EDF-1)
          Length = 148

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 389 DWEPV-VLRRAKTKAADLKSAKAVNQALRTGAPVET 493
           DW+ V VLR+    AA  KS +AV  A R G  VET
Sbjct: 5   DWDTVTVLRKKGPSAAQAKSKQAVLAAQRRGEDVET 40

to top

>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
           (Endostatin-XV)]
          Length = 1367

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +1

Query: 64  GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG--GRLRPRLNTGER 201
           G+PG   AP  P P  P G     G  G Q   G  G   P  + GE+
Sbjct: 632 GSPGEDGAPGEPGPQGPEGQPGLDGASGQQGMKGEKGARGPNGSAGEK 679

to top

>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +1

Query: 19  GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 165
           G+      R Q    G PG V AP  P P  P+G   E G  G+  K G
Sbjct: 624 GETGFPGPRGQEGLPGKPGIVGAPGLPGPPGPKG---EPGLTGLPEKPG 669

to top

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +1

Query: 58   WKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGG 168
            W+  P   R P   D V PRG  +  GC G     GG
Sbjct: 1624 WRRGPRPRRRPGLTDRVPPRGGPSPRGCRGAGRAGGG 1660

to top

>OTO1_ONCKE (P83371) Otolin-1 precursor|
          Length = 508

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +1

Query: 19  GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRLN 189
           GD     D+      GAPG +        + P+G   E+G  G++   G R +P  N
Sbjct: 189 GDKGDKGDQGDTGMPGAPGILGKEGPKGDLGPKGEKGETGLPGLKGDLGERGKPGWN 245

to top

>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 17/64 (26%)
 Frame = +1

Query: 61   KGAPGRVRAP------------SGPDPVAPRGAVNESGCLGMQPKSG-----GRLRPRLN 189
            +G PG   AP              P P  PRG V  SG  G    SG     G   PR N
Sbjct: 1109 RGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGN 1168

Query: 190  TGER 201
             GER
Sbjct: 1169 RGER 1172

to top

>PKHA4_RAT (P60669) Pleckstrin homology domain-containing family A member 4|
           (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1)
          Length = 779

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -1

Query: 124 PRLVGRQGPGRTGLSPSQAPLSRGLG 47
           P  V R+  GRT  SP  APLSRG G
Sbjct: 180 PPEVNRREEGRTSESPEVAPLSRGPG 205

to top

>PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2132

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 22   DASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQP-KSGGRLRPRLNTG 195
            ++ SA+   +VPW   P   R PSG +  +P G+ + SG   +    SGG +     +G
Sbjct: 868  ESGSASGDGEVPWSHTPTVGRLPSGGE--SPEGSASASGTGDLSGLPSGGEITETSTSG 924

to top

>IE63_SHV21 (P13199) 52 kDa immediate-early phosphoprotein|
          Length = 417

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = -2

Query: 171 STARFG----LHSQTTRLVDRASWGDRVRAGRGSHPPRRPF 61
           S  RFG    + S +T    + SW DRVR       P RPF
Sbjct: 85  SPMRFGKRPRISSNSTSRSCKTSWADRVREAAAQRRPSRPF 125

to top

>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 61   KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRL 186
            KG PG    P    P  P G   + G +GM  + G R  P L
Sbjct: 965  KGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGL 1006

to top

>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 17/64 (26%)
 Frame = +1

Query: 61   KGAPGRVRAP------------SGPDPVAPRGAVNESGCLGMQPKSG-----GRLRPRLN 189
            +G PG   AP              P P  PRG V  SG  G    SG     G   PR N
Sbjct: 953  RGFPGNPGAPGSPGPAGHQGAVGSPGPAGPRGPVGPSGPPGKDGASGHPGPIGPPGPRGN 1012

Query: 190  TGER 201
             GER
Sbjct: 1013 RGER 1016



 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +1

Query: 19   GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 165
            G   +  DR +    GAPG    P  P PV P G   + G  G    SG
Sbjct: 870  GAPGAKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETGPAGPSG 918

to top

>CUC2C_HAECO (P16252) Cuticle collagen 2C (Fragment)|
          Length = 210

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 19/52 (36%), Positives = 21/52 (40%)
 Frame = +1

Query: 64  GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRLNTGERPIANKY 219
           GAPG   AP  P    PRG     G  G     G   +P    GER +  KY
Sbjct: 145 GAPGHPGAPGAPGEKGPRGQDGHPGAPGNAGHPGQPGQPG-PPGERGVCPKY 195

to top

>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)|
          Length = 1362

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +1

Query: 61  KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRL 186
           KG PG V     P P  P G   E G  G+    G +  P L
Sbjct: 619 KGEPGNVGPAGAPGPAGPGGIPGERGVAGVPGGKGEKGAPGL 660



 Score = 29.3 bits (64), Expect = 7.8
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = +1

Query: 64  GAPGRVRAPSGPDPVAP---RGAVNESGCLGMQPKSGGRLRPRLNTGERPIANKYREGK 231
           G PG    P  P P  P   RG V E G  G + +SG +  P       P      EGK
Sbjct: 320 GLPGPRGIPGPPGPAGPSGARGLVGEPGPAGAKGESGNKGEPGAAGPPGPPGPSGEEGK 378


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,435,047
Number of Sequences: 219361
Number of extensions: 1264893
Number of successful extensions: 7001
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 5177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6912
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result