>YB89_YEAST (P38140) Putative 60.3 kDa transcriptional regulatory protein in|
           PRP5-THI2 intergenic region
          Length = 529

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 175 HTTQPKQASKQDNSAPLCLSCCRVAHM*CESESP 74
           HT + K+  K+ N+   C++C R+ H+ CE++ P
Sbjct: 23  HTLEKKKRKKRKNTNVACVNCSRL-HVSCEAKRP 55

>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2
          Length = 863

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 17/57 (29%), Positives = 21/57 (36%)
 Frame = -2

Query: 196 PPAAPCPHTTQPKQASKQDNSAPLCLSCCRVAHM*CESESPPASVVHGVHGARREGE 26
           PP AP P+ T P      D   P    C R      +S   P +   G +G    GE
Sbjct: 36  PPPAPPPNPTTPSHPESADEPGPRSRLCSR------DSSCTPGAAKGGANGECGRGE 86

>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2) (Hyperpolarization-activated
           cation channel 1) (HAC-1)
          Length = 863

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 17/57 (29%), Positives = 21/57 (36%)
 Frame = -2

Query: 196 PPAAPCPHTTQPKQASKQDNSAPLCLSCCRVAHM*CESESPPASVVHGVHGARREGE 26
           PP AP P+ T P      D   P    C R      +S   P +   G +G    GE
Sbjct: 36  PPPAPPPNPTTPSHPESADEPGPRARLCSR------DSACTPGAAKGGANGECGRGE 86

>PTPRG_MOUSE (Q05909) Receptor-type tyrosine-protein phosphatase gamma precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma)
           (R-PTP-gamma)
          Length = 1442

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 141 ITLPLSVFLVVGWLTCDARVSHPLPRSSMEYTELGERGKLAS 16
           + L L + ++V W  C+   S   PR S E    GERG+  S
Sbjct: 747 VCLVLLIAVLVYWRGCNKIKSKGFPRRSREVPSSGERGEKGS 788

>ZN319_HUMAN (Q9P2F9) Zinc finger protein 319|
          Length = 582

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 199 SPPAAPCPHTTQPKQASKQDNSAPLC 122
           S PAAP P T  P + + +  S P+C
Sbjct: 182 SLPAAPAPSTVTPAEQADKPYSCPIC 207


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,591,440
Number of Sequences: 219361
Number of extensions: 653448
Number of successful extensions: 2075
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2074
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)