ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart35h08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473015.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1134 Score = 79.8 bits (40), Expect = 4e-12 Identities = 100/120 (83%) Strand = Plus / Plus Query: 126 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 185 ||||||| |||||| ||||||||||||||||||| ||| | || ||| |||||||||||| Sbjct: 73 gatggcctgctgctcaacggcaacttcgagtaccagccgagcaagtcacagatgaacggc 132 Query: 186 acgagggtgacgggcgcgcacgccatcccctactggaaggccaccggccccgtggagtac 245 || ||||||| || | | |||| ||||| ||||||||| |||||| |||||||||| Sbjct: 133 acaagggtgatggcggagtacgcgatcccgtactggaagatcaccgggttcgtggagtac 192
>dbj|AK110895.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A05, full insert sequence Length = 1499 Score = 79.8 bits (40), Expect = 4e-12 Identities = 100/120 (83%) Strand = Plus / Plus Query: 126 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 185 ||||||| |||||| ||||||||||||||||||| ||| | || ||| |||||||||||| Sbjct: 204 gatggcctgctgctcaacggcaacttcgagtaccagccgagcaagtcacagatgaacggc 263 Query: 186 acgagggtgacgggcgcgcacgccatcccctactggaaggccaccggccccgtggagtac 245 || ||||||| || | | |||| ||||| ||||||||| |||||| |||||||||| Sbjct: 264 acaagggtgatggcggagtacgcgatcccgtactggaagatcaccgggttcgtggagtac 323
>ref|XM_473018.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 75.8 bits (38), Expect = 6e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 126 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 185 ||||||| ||||| ||| |||||||||||| | |||| ||| |||||||||||||||| Sbjct: 82 gatggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggc 141 Query: 186 acgagggtgacggg 199 |||||||||||||| Sbjct: 142 acgagggtgacggg 155
>dbj|AK072539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133J23, full insert sequence Length = 1588 Score = 75.8 bits (38), Expect = 6e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 126 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 185 ||||||| ||||| ||| |||||||||||| | |||| ||| |||||||||||||||| Sbjct: 486 gatggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggc 545 Query: 186 acgagggtgacggg 199 |||||||||||||| Sbjct: 546 acgagggtgacggg 559
>dbj|AK063925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C04, full insert sequence Length = 1517 Score = 75.8 bits (38), Expect = 6e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 126 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 185 ||||||| ||||| ||| |||||||||||| | |||| ||| |||||||||||||||| Sbjct: 195 gatggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggc 254 Query: 186 acgagggtgacggg 199 |||||||||||||| Sbjct: 255 acgagggtgacggg 268
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 73.8 bits (37), Expect = 2e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| |||||| ||||||||||||||||||| ||| | || ||| |||||||||||||| Sbjct: 24702564 ggcctgctgctcaacggcaacttcgagtaccagccgagcaagtcacagatgaacggcaca 24702623 Query: 189 agggtgacgggcgcgcacgccatcccctactggaaggccaccggccccgtggagtac 245 ||||||| || | | |||| ||||| ||||||||| |||||| |||||||||| Sbjct: 24702624 agggtgatggcggagtacgcgatcccgtactggaagatcaccgggttcgtggagtac 24702680 Score = 69.9 bits (35), Expect = 4e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| ||||| ||| |||||||||||| | |||| ||| ||||||||||||||||||| Sbjct: 24716590 ggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggcacg 24716649 Query: 189 agggtgacggg 199 ||||||||||| Sbjct: 24716650 agggtgacggg 24716660 Score = 46.1 bits (23), Expect = 0.056 Identities = 56/67 (83%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| ||||| ||| ||||| |||||| | |||| ||| ||||||| ||||||||||| Sbjct: 24720306 ggcctgctgccgaatggcaatttcgaggaggcgccggacaagtcgcagctgaacggcacg 24720365 Query: 189 agggtga 195 ||||||| Sbjct: 24720366 agggtga 24720372
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 73.8 bits (37), Expect = 2e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| |||||| ||||||||||||||||||| ||| | || ||| |||||||||||||| Sbjct: 92087 ggcctgctgctcaacggcaacttcgagtaccagccgagcaagtcacagatgaacggcaca 92146 Query: 189 agggtgacgggcgcgcacgccatcccctactggaaggccaccggccccgtggagtac 245 ||||||| || | | |||| ||||| ||||||||| |||||| |||||||||| Sbjct: 92147 agggtgatggcggagtacgcgatcccgtactggaagatcaccgggttcgtggagtac 92203 Score = 69.9 bits (35), Expect = 4e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| ||||| ||| |||||||||||| | |||| ||| ||||||||||||||||||| Sbjct: 106113 ggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggcacg 106172 Query: 189 agggtgacggg 199 ||||||||||| Sbjct: 106173 agggtgacggg 106183 Score = 46.1 bits (23), Expect = 0.056 Identities = 56/67 (83%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| ||||| ||| ||||| |||||| | |||| ||| ||||||| ||||||||||| Sbjct: 109829 ggcctgctgccgaatggcaatttcgaggaggcgccggacaagtcgcagctgaacggcacg 109888 Query: 189 agggtga 195 ||||||| Sbjct: 109889 agggtga 109895
>ref|XM_473019.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1116 Score = 46.1 bits (23), Expect = 0.056 Identities = 56/67 (83%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| ||||| ||| ||||| |||||| | |||| ||| ||||||| ||||||||||| Sbjct: 79 ggcctgctgccgaatggcaatttcgaggaggcgccggacaagtcgcagctgaacggcacg 138 Query: 189 agggtga 195 ||||||| Sbjct: 139 agggtga 145
>dbj|AK073892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076M24, full insert sequence Length = 1599 Score = 46.1 bits (23), Expect = 0.056 Identities = 56/67 (83%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| ||||| ||| ||||| |||||| | |||| ||| ||||||| ||||||||||| Sbjct: 200 ggcctgctgccgaatggcaatttcgaggaggcgccggacaagtcgcagctgaacggcacg 259 Query: 189 agggtga 195 ||||||| Sbjct: 260 agggtga 266
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 61 gcgcgcgctgcgtcgccgcgct 82 |||||||||||||||||||||| Sbjct: 2830369 gcgcgcgctgcgtcgccgcgct 2830348
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 gcgcgcgctgcgtcgccgcgctgc 84 |||||||||||| ||||||||||| Sbjct: 2483670 gcgcgcgctgcggcgccgcgctgc 2483647
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 gcgcgcgctgcgtcgccgcgctgc 84 |||||||||||| ||||||||||| Sbjct: 3701944 gcgcgcgctgcggcgccgcgctgc 3701967
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 gcgcgcgctgcgtcgccgcgctgc 84 |||||||||||| ||||||||||| Sbjct: 3442257 gcgcgcgctgcggcgccgcgctgc 3442280
>dbj|AB187026.1| Triticum aestivum CHI gene for chalcone isomerase, partial cds Length = 394 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 cctactggaaggccaccggc 233 |||||||||||||||||||| Sbjct: 36 cctactggaaggccaccggc 55
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gggtgacgggcgcgcacgcc 209 |||||||||||||||||||| Sbjct: 2566383 gggtgacgggcgcgcacgcc 2566364
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 gcgcgcgctgcgtcgccgcgctgc 84 |||||||||||| ||||||||||| Sbjct: 1419171 gcgcgcgctgcggcgccgcgctgc 1419148 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,118,530 Number of Sequences: 3902068 Number of extensions: 1118530 Number of successful extensions: 28885 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28221 Number of HSP's gapped (non-prelim): 664 length of query: 265 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 243 effective length of database: 17,147,199,772 effective search space: 4166769544596 effective search space used: 4166769544596 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
