Clone Name | bart35h01 |
---|---|
Clone Library Name | barley_pub |
>gb|AC124477.4| Mus musculus BAC clone RP24-103A12 from chromosome 9, complete sequence Length = 151238 Score = 38.2 bits (19), Expect = 1.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 acaaaacatctgaacctga 19 ||||||||||||||||||| Sbjct: 116620 acaaaacatctgaacctga 116638
>gb|AC125045.4| Mus musculus BAC clone RP23-349M7 from chromosome 9, complete sequence Length = 205064 Score = 38.2 bits (19), Expect = 1.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 acaaaacatctgaacctga 19 ||||||||||||||||||| Sbjct: 3825 acaaaacatctgaacctga 3843
>gb|AC117246.3| Mus musculus BAC clone RP24-317G19 from 17, complete sequence Length = 174227 Score = 38.2 bits (19), Expect = 1.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 22 catcccagcacagaaacagctaa 44 |||||||||||| |||||||||| Sbjct: 32522 catcccagcacacaaacagctaa 32500
>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence Length = 147941 Score = 38.2 bits (19), Expect = 1.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aaaacatctgaacctgaac 21 ||||||||||||||||||| Sbjct: 58052 aaaacatctgaacctgaac 58034
>emb|BX323985.8| Zebrafish DNA sequence from clone CH211-194D1 in linkage group 17, complete sequence Length = 198162 Score = 38.2 bits (19), Expect = 1.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 aaacatctgaacctgaacc 22 ||||||||||||||||||| Sbjct: 72619 aaacatctgaacctgaacc 72601
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 1.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aaaacatctgaacctgaac 21 ||||||||||||||||||| Sbjct: 1217536 aaaacatctgaacctgaac 1217554
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 1.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aaaacatctgaacctgaac 21 ||||||||||||||||||| Sbjct: 1332563 aaaacatctgaacctgaac 1332581
>ref|XM_341026.2| PREDICTED: Rattus norvegicus zinc finger protein 358 (predicted) (Zfp358_predicted), mRNA Length = 1917 Score = 38.2 bits (19), Expect = 1.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 atcccagcacagaaacagc 41 ||||||||||||||||||| Sbjct: 1489 atcccagcacagaaacagc 1471
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 1.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aaaacatctgaacctgaac 21 ||||||||||||||||||| Sbjct: 1330284 aaaacatctgaacctgaac 1330302
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 1.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aaaacatctgaacctgaac 21 ||||||||||||||||||| Sbjct: 1217536 aaaacatctgaacctgaac 1217554
>emb|BX000509.2|CNS08CDZ Oryza sativa chromosome 12, . BAC OJ1085_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121556 Score = 38.2 bits (19), Expect = 1.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aaaacatctgaacctgaac 21 ||||||||||||||||||| Sbjct: 75246 aaaacatctgaacctgaac 75228
>gb|AC118193.9| Mus musculus chromosome 8, clone RP23-241A10, complete sequence Length = 222682 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 acatctgaacctgaacca 23 |||||||||||||||||| Sbjct: 60596 acatctgaacctgaacca 60613
>gb|AC140782.4| Mus musculus BAC clone RP24-417N13 from chromosome 7, complete sequence Length = 196282 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 cccagcacagaaacagct 42 |||||||||||||||||| Sbjct: 132524 cccagcacagaaacagct 132541
>ref|NM_199047.2| Homo sapiens TATA box binding protein like 2 (TBPL2), mRNA Length = 1304 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 cccagcacagaaacagct 42 |||||||||||||||||| Sbjct: 1178 cccagcacagaaacagct 1195
>gb|AY457923.1| Homo sapiens TBP-related factor 3 (TRF3) mRNA, complete cds Length = 1304 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 cccagcacagaaacagct 42 |||||||||||||||||| Sbjct: 1178 cccagcacagaaacagct 1195
>gb|AC127414.4| Mus musculus BAC clone RP23-246P24 from chromosome 7, complete sequence Length = 218222 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 cccagcacagaaacagct 42 |||||||||||||||||| Sbjct: 104701 cccagcacagaaacagct 104718
>gb|AC126391.9| Homo sapiens chromosome 17, clone RP11-106A7, complete sequence Length = 56981 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 25 cccagcacagaaacagct 42 |||||||||||||||||| Sbjct: 41659 cccagcacagaaacagct 41642
>gb|AC132337.3| Mus musculus BAC clone RP24-153D21 from chromosome 6, complete sequence Length = 146358 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acaaaacatctgaacctg 18 |||||||||||||||||| Sbjct: 76053 acaaaacatctgaacctg 76070
>gb|AC124190.4| Mus musculus BAC clone RP23-267M9 from 3, complete sequence Length = 167681 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 catctgaacctgaaccat 24 |||||||||||||||||| Sbjct: 143080 catctgaacctgaaccat 143097
>gb|AC118695.10| Mus musculus chromosome 19, clone RP24-62C10, complete sequence Length = 261979 Score = 36.2 bits (18), Expect = 5.3 Identities = 21/22 (95%) Strand = Plus / Plus Query: 5 aacatctgaacctgaaccatcc 26 |||||||| ||||||||||||| Sbjct: 64651 aacatctggacctgaaccatcc 64672
>gb|AC099578.8| Mus musculus chromosome 10, clone RP23-182D17, complete sequence Length = 176161 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 aaacatctgaacctgaac 21 |||||||||||||||||| Sbjct: 88553 aaacatctgaacctgaac 88570
>gb|AC115750.9| Mus musculus chromosome 10, clone RP23-16F5, complete sequence Length = 228071 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 ctgaacctgaaccatccc 27 |||||||||||||||||| Sbjct: 104715 ctgaacctgaaccatccc 104732
>emb|AL591463.7| Human DNA sequence from clone RP11-275A6 on chromosome 1 Contains the 3' end of a novel gene and a novel gene, complete sequence Length = 186710 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 cccagcacagaaacagct 42 |||||||||||||||||| Sbjct: 183615 cccagcacagaaacagct 183632
>emb|AL807754.8| Zebrafish DNA sequence from clone CH211-197B11 in linkage group 15 Contains the 3' part of the odz4 gene (odd Oz/ten-m homolog 4) and a CpG island, complete sequence Length = 193544 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 atcccagcacagaaacag 40 |||||||||||||||||| Sbjct: 161612 atcccagcacagaaacag 161595
>gb|AC139749.4| Homo sapiens chromosome 11, clone RP13-870H17, complete sequence Length = 131676 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 atcccagcacagaaacag 40 |||||||||||||||||| Sbjct: 8588 atcccagcacagaaacag 8571
>emb|AL713921.15| Mouse DNA sequence from clone RP23-475A8 on chromosome 11 Contains a novel gene and a CpG island, complete sequence Length = 214065 Score = 36.2 bits (18), Expect = 5.3 Identities = 21/22 (95%) Strand = Plus / Minus Query: 10 ctgaacctgaaccatcccagca 31 ||||||||||| |||||||||| Sbjct: 118103 ctgaacctgaaacatcccagca 118082
>gb|AC118754.6| Homo sapiens, clone RP11-141J13, complete sequence Length = 185378 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 cccagcacagaaacagct 42 |||||||||||||||||| Sbjct: 167784 cccagcacagaaacagct 167801
>gb|DQ448593.1| Homo sapiens TATA box binding protein like 2 mRNA, complete cds Length = 1303 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 cccagcacagaaacagct 42 |||||||||||||||||| Sbjct: 1236 cccagcacagaaacagct 1253
>gb|AC116441.2| Homo sapiens chromosome 3 clone RP11-20O23, complete sequence Length = 142374 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 20 accatcccagcacagaaa 37 |||||||||||||||||| Sbjct: 45092 accatcccagcacagaaa 45075
>gb|AC025169.5| Homo sapiens chromosome 5 clone CTC-352M6, complete sequence Length = 161920 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 12 gaacctgaaccatcccag 29 |||||||||||||||||| Sbjct: 82170 gaacctgaaccatcccag 82153
>gb|AC010461.7| Homo sapiens chromosome 5 clone CTD-2275A5, complete sequence Length = 109588 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 12 gaacctgaaccatcccag 29 |||||||||||||||||| Sbjct: 55907 gaacctgaaccatcccag 55890
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 cccagcacagaaacagct 42 |||||||||||||||||| Sbjct: 3017683 cccagcacagaaacagct 3017700
>emb|BX465192.7| Zebrafish DNA sequence from clone CH211-202P4 in linkage group 12, complete sequence Length = 200890 Score = 36.2 bits (18), Expect = 5.3 Identities = 21/22 (95%) Strand = Plus / Minus Query: 15 cctgaaccatcccagcacagaa 36 ||||||||||||||| |||||| Sbjct: 9065 cctgaaccatcccagtacagaa 9044
>gb|AC127521.11| Homo sapiens chromosome 17, clone RP13-580F15, complete sequence Length = 31450 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 cccagcacagaaacagct 42 |||||||||||||||||| Sbjct: 770 cccagcacagaaacagct 787
>gb|AC122683.4| Homo sapiens 3 RP11-528N21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 142771 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 20 accatcccagcacagaaa 37 |||||||||||||||||| Sbjct: 129229 accatcccagcacagaaa 129212
>gb|AC128737.4| Mus musculus BAC clone RP23-99A8 from chromosome unknown, complete sequence Length = 211960 Score = 36.2 bits (18), Expect = 5.3 Identities = 21/22 (95%) Strand = Plus / Plus Query: 6 acatctgaacctgaaccatccc 27 |||||||| ||||||||||||| Sbjct: 73068 acatctgatcctgaaccatccc 73089
>emb|BX572618.5| Mouse DNA sequence from clone RP23-224A7 on chromosome X, complete sequence Length = 84016 Score = 36.2 bits (18), Expect = 5.3 Identities = 21/22 (95%) Strand = Plus / Minus Query: 6 acatctgaacctgaaccatccc 27 |||||||| ||||||||||||| Sbjct: 74246 acatctgatcctgaaccatccc 74225
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1349_D05 Length = 174478 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 cccagcacagaaacagct 42 |||||||||||||||||| Sbjct: 68406 cccagcacagaaacagct 68423
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 36.2 bits (18), Expect = 5.3 Identities = 21/22 (95%) Strand = Plus / Plus Query: 9 tctgaacctgaaccatcccagc 30 |||||||||||||||| ||||| Sbjct: 1280840 tctgaacctgaaccattccagc 1280861
>gb|AC104197.14| Mus musculus chromosome 8, clone RP24-319N16, complete sequence Length = 195334 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 atcccagcacagaaacag 40 |||||||||||||||||| Sbjct: 169755 atcccagcacagaaacag 169772
>gb|AC115820.11| Mus musculus chromosome 8, clone RP23-479K9, complete sequence Length = 185977 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 atcccagcacagaaacag 40 |||||||||||||||||| Sbjct: 155975 atcccagcacagaaacag 155958
>gb|AC134448.4| Mus musculus BAC clone RP24-186G11 from 3, complete sequence Length = 160223 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 catctgaacctgaaccat 24 |||||||||||||||||| Sbjct: 12667 catctgaacctgaaccat 12684
>gb|AC127366.4| Mus musculus BAC clone RP23-10E9 from 8, complete sequence Length = 177375 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 acatctgaacctgaacca 23 |||||||||||||||||| Sbjct: 104771 acatctgaacctgaacca 104788
>emb|AL356801.5|CNS05TDJ Human chromosome 14 DNA sequence BAC R-454L9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158608 Score = 36.2 bits (18), Expect = 5.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 cccagcacagaaacagct 42 |||||||||||||||||| Sbjct: 99175 cccagcacagaaacagct 99192 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 442,209 Number of Sequences: 3902068 Number of extensions: 442209 Number of successful extensions: 115777 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115560 Number of HSP's gapped (non-prelim): 217 length of query: 44 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 24 effective length of database: 17,155,003,908 effective search space: 411720093792 effective search space used: 411720093792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)