Clone Name | bart35g08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK066502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074E12, full insert sequence Length = 1423 Score = 355 bits (179), Expect = 1e-94 Identities = 350/407 (85%) Strand = Plus / Plus Query: 160 ccggaaccctcgacggccgatgccgccgtggacggcttcctgccgccccatgccgcgcgc 219 ||||| |||||| | ||||||||||||| ||||| ||||||||||| ||| ||||||||| Sbjct: 198 ccggagccctcggctgccgatgccgccggggacgacttcctgccgcaccaggccgcgcgc 257 Query: 220 atggcctgcggcggcggggccaacgtgctgttcgagcttcactcccactccaaccacagc 279 ||||||| || ||||| | | ||||||||||||||| ||||||||||||||||||||| Sbjct: 258 atggcctctggaggcggagggagcgtgctgttcgagctccactcccactccaaccacagc 317 Query: 280 gacgggttcctgtccccctccgctctagtcgagcgtgcccaccgcaacggggtgaaagtt 339 ||||||||||| |||||||||| || || ||||| |||||||||||||| |||||||| Sbjct: 318 gacgggttcctctccccctccgagctcgtggagcgcgcccaccgcaacggagtgaaagta 377 Query: 340 cttgccctaacagatcatgataccatggctggtataccggaagcgatgtcttcagctcat 399 |||||||| ||||||||||||||||||||||||||||| ||||| |||| | ||||| Sbjct: 378 cttgccctgacagatcatgataccatggctggtatacctgaagctgtgtcagcggctcac 437 Query: 400 aaatgtggcataagaataattcctggagtagaaattagtgcactacattctccacgggaa 459 | || |||||| |||||||| || ||||| ||||| ||||||||| |||||||| |||| Sbjct: 438 agatttggcatgagaataatcccaggagttgaaatcagtgcactatattctccaaaggaa 497 Query: 460 attcctggtgctggtgaacccgttcatattcttgcatactatggtatgtgtggcccatca 519 || ||||| ||||||| | |||||||||||||||||||||||||||||||| || ||| Sbjct: 498 atcgctggtactggtgagcatgttcatattcttgcatactatggtatgtgtggaccttca 557 Query: 520 aggtttgatgagttggacagcatgctcttgaacattagagacgggcg 566 ||||||||||| |||| || ||||| | ||||||||||| ||||| Sbjct: 558 aggtttgatgatctggaaaggatgctatcaaacattagagatgggcg 604 Score = 89.7 bits (45), Expect = 9e-15 Identities = 96/113 (84%) Strand = Plus / Plus Query: 30 cctcccaaaccctgccatgggaaccaagaagaagacgaagacgagcaggggccggaagaa 89 ||||||| | || |||||||| | || ||||||| ||||| |||||||| || ||||||| Sbjct: 60 cctcccagaacccgccatggggagcaggaagaaggcgaagccgagcaggagcaggaagaa 119 Query: 90 gccgaggaccagcgccgaccaggccctggccctcgactacgtccgctcctggg 142 | ||| | | ||| ||||||||||| |||||||||||||||||||| |||||| Sbjct: 120 ggcgaagccgagccccgaccaggccgtggccctcgactacgtccgcgcctggg 172
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 170 bits (86), Expect = 3e-39 Identities = 149/170 (87%) Strand = Plus / Minus Query: 160 ccggaaccctcgacggccgatgccgccgtggacggcttcctgccgccccatgccgcgcgc 219 ||||| |||||| | ||||||||||||| ||||| ||||||||||| ||| ||||||||| Sbjct: 4770798 ccggagccctcggctgccgatgccgccggggacgacttcctgccgcaccaggccgcgcgc 4770739 Query: 220 atggcctgcggcggcggggccaacgtgctgttcgagcttcactcccactccaaccacagc 279 ||||||| || ||||| | | ||||||||||||||| ||||||||||||||||||||| Sbjct: 4770738 atggcctctggaggcggagggagcgtgctgttcgagctccactcccactccaaccacagc 4770679 Query: 280 gacgggttcctgtccccctccgctctagtcgagcgtgcccaccgcaacgg 329 ||||||||||| |||||||||| || || ||||| |||||||||||||| Sbjct: 4770678 gacgggttcctctccccctccgagctcgtggagcgcgcccaccgcaacgg 4770629 Score = 111 bits (56), Expect = 3e-21 Identities = 107/124 (86%) Strand = Plus / Minus Query: 330 ggtgaaagttcttgccctaacagatcatgataccatggctggtataccggaagcgatgtc 389 ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct: 4769768 ggtgaaagtacttgccctgacagatcatgataccatggctggtatacctgaagctgtgtc 4769709 Query: 390 ttcagctcataaatgtggcataagaataattcctggagtagaaattagtgcactacattc 449 | ||||| | || |||||| |||||||| || ||||| ||||| ||||||||| |||| Sbjct: 4769708 agcggctcacagatttggcatgagaataatcccaggagttgaaatcagtgcactatattc 4769649 Query: 450 tcca 453 |||| Sbjct: 4769648 tcca 4769645 Score = 97.6 bits (49), Expect = 4e-17 Identities = 100/117 (85%) Strand = Plus / Minus Query: 30 cctcccaaaccctgccatgggaaccaagaagaagacgaagacgagcaggggccggaagaa 89 ||||||| | || |||||||| | || ||||||| ||||| |||||||| || ||||||| Sbjct: 4770937 cctcccagaacccgccatggggagcaggaagaaggcgaagccgagcaggagcaggaagaa 4770878 Query: 90 gccgaggaccagcgccgaccaggccctggccctcgactacgtccgctcctgggcgca 146 | ||| | | ||| ||||||||||| |||||||||||||||||||| |||||||||| Sbjct: 4770877 ggcgaagccgagccccgaccaggccgtggccctcgactacgtccgcgcctgggcgca 4770821 Score = 95.6 bits (48), Expect = 2e-16 Identities = 96/112 (85%) Strand = Plus / Minus Query: 455 gggaaattcctggtgctggtgaacccgttcatattcttgcatactatggtatgtgtggcc 514 ||||||| ||||| ||||||| | |||||||||||||||||||||||||||||||| | Sbjct: 4769048 gggaaatcgctggtactggtgagcatgttcatattcttgcatactatggtatgtgtggac 4768989 Query: 515 catcaaggtttgatgagttggacagcatgctcttgaacattagagacgggcg 566 | |||||||||||||| |||| || ||||| | ||||||||||| ||||| Sbjct: 4768988 cttcaaggtttgatgatctggaaaggatgctatcaaacattagagatgggcg 4768937 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 3606624 actccgactccaaccacagcgacg 3606601
>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0019D17, from chromosome 3, complete sequence Length = 129658 Score = 170 bits (86), Expect = 3e-39 Identities = 149/170 (87%) Strand = Plus / Plus Query: 160 ccggaaccctcgacggccgatgccgccgtggacggcttcctgccgccccatgccgcgcgc 219 ||||| |||||| | ||||||||||||| ||||| ||||||||||| ||| ||||||||| Sbjct: 64657 ccggagccctcggctgccgatgccgccggggacgacttcctgccgcaccaggccgcgcgc 64716 Query: 220 atggcctgcggcggcggggccaacgtgctgttcgagcttcactcccactccaaccacagc 279 ||||||| || ||||| | | ||||||||||||||| ||||||||||||||||||||| Sbjct: 64717 atggcctctggaggcggagggagcgtgctgttcgagctccactcccactccaaccacagc 64776 Query: 280 gacgggttcctgtccccctccgctctagtcgagcgtgcccaccgcaacgg 329 ||||||||||| |||||||||| || || ||||| |||||||||||||| Sbjct: 64777 gacgggttcctctccccctccgagctcgtggagcgcgcccaccgcaacgg 64826 Score = 111 bits (56), Expect = 3e-21 Identities = 107/124 (86%) Strand = Plus / Plus Query: 330 ggtgaaagttcttgccctaacagatcatgataccatggctggtataccggaagcgatgtc 389 ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct: 65687 ggtgaaagtacttgccctgacagatcatgataccatggctggtatacctgaagctgtgtc 65746 Query: 390 ttcagctcataaatgtggcataagaataattcctggagtagaaattagtgcactacattc 449 | ||||| | || |||||| |||||||| || ||||| ||||| ||||||||| |||| Sbjct: 65747 agcggctcacagatttggcatgagaataatcccaggagttgaaatcagtgcactatattc 65806 Query: 450 tcca 453 |||| Sbjct: 65807 tcca 65810 Score = 97.6 bits (49), Expect = 4e-17 Identities = 100/117 (85%) Strand = Plus / Plus Query: 30 cctcccaaaccctgccatgggaaccaagaagaagacgaagacgagcaggggccggaagaa 89 ||||||| | || |||||||| | || ||||||| ||||| |||||||| || ||||||| Sbjct: 64518 cctcccagaacccgccatggggagcaggaagaaggcgaagccgagcaggagcaggaagaa 64577 Query: 90 gccgaggaccagcgccgaccaggccctggccctcgactacgtccgctcctgggcgca 146 | ||| | | ||| ||||||||||| |||||||||||||||||||| |||||||||| Sbjct: 64578 ggcgaagccgagccccgaccaggccgtggccctcgactacgtccgcgcctgggcgca 64634 Score = 95.6 bits (48), Expect = 2e-16 Identities = 96/112 (85%) Strand = Plus / Plus Query: 455 gggaaattcctggtgctggtgaacccgttcatattcttgcatactatggtatgtgtggcc 514 ||||||| ||||| ||||||| | |||||||||||||||||||||||||||||||| | Sbjct: 66407 gggaaatcgctggtactggtgagcatgttcatattcttgcatactatggtatgtgtggac 66466 Query: 515 catcaaggtttgatgagttggacagcatgctcttgaacattagagacgggcg 566 | |||||||||||||| |||| || ||||| | ||||||||||| ||||| Sbjct: 66467 cttcaaggtttgatgatctggaaaggatgctatcaaacattagagatgggcg 66518
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 170 bits (86), Expect = 3e-39 Identities = 149/170 (87%) Strand = Plus / Minus Query: 160 ccggaaccctcgacggccgatgccgccgtggacggcttcctgccgccccatgccgcgcgc 219 ||||| |||||| | ||||||||||||| ||||| ||||||||||| ||| ||||||||| Sbjct: 4770913 ccggagccctcggctgccgatgccgccggggacgacttcctgccgcaccaggccgcgcgc 4770854 Query: 220 atggcctgcggcggcggggccaacgtgctgttcgagcttcactcccactccaaccacagc 279 ||||||| || ||||| | | ||||||||||||||| ||||||||||||||||||||| Sbjct: 4770853 atggcctctggaggcggagggagcgtgctgttcgagctccactcccactccaaccacagc 4770794 Query: 280 gacgggttcctgtccccctccgctctagtcgagcgtgcccaccgcaacgg 329 ||||||||||| |||||||||| || || ||||| |||||||||||||| Sbjct: 4770793 gacgggttcctctccccctccgagctcgtggagcgcgcccaccgcaacgg 4770744 Score = 111 bits (56), Expect = 3e-21 Identities = 107/124 (86%) Strand = Plus / Minus Query: 330 ggtgaaagttcttgccctaacagatcatgataccatggctggtataccggaagcgatgtc 389 ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct: 4769883 ggtgaaagtacttgccctgacagatcatgataccatggctggtatacctgaagctgtgtc 4769824 Query: 390 ttcagctcataaatgtggcataagaataattcctggagtagaaattagtgcactacattc 449 | ||||| | || |||||| |||||||| || ||||| ||||| ||||||||| |||| Sbjct: 4769823 agcggctcacagatttggcatgagaataatcccaggagttgaaatcagtgcactatattc 4769764 Query: 450 tcca 453 |||| Sbjct: 4769763 tcca 4769760 Score = 97.6 bits (49), Expect = 4e-17 Identities = 100/117 (85%) Strand = Plus / Minus Query: 30 cctcccaaaccctgccatgggaaccaagaagaagacgaagacgagcaggggccggaagaa 89 ||||||| | || |||||||| | || ||||||| ||||| |||||||| || ||||||| Sbjct: 4771052 cctcccagaacccgccatggggagcaggaagaaggcgaagccgagcaggagcaggaagaa 4770993 Query: 90 gccgaggaccagcgccgaccaggccctggccctcgactacgtccgctcctgggcgca 146 | ||| | | ||| ||||||||||| |||||||||||||||||||| |||||||||| Sbjct: 4770992 ggcgaagccgagccccgaccaggccgtggccctcgactacgtccgcgcctgggcgca 4770936 Score = 95.6 bits (48), Expect = 2e-16 Identities = 96/112 (85%) Strand = Plus / Minus Query: 455 gggaaattcctggtgctggtgaacccgttcatattcttgcatactatggtatgtgtggcc 514 ||||||| ||||| ||||||| | |||||||||||||||||||||||||||||||| | Sbjct: 4769163 gggaaatcgctggtactggtgagcatgttcatattcttgcatactatggtatgtgtggac 4769104 Query: 515 catcaaggtttgatgagttggacagcatgctcttgaacattagagacgggcg 566 | |||||||||||||| |||| || ||||| | ||||||||||| ||||| Sbjct: 4769103 cttcaaggtttgatgatctggaaaggatgctatcaaacattagagatgggcg 4769052 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 3606735 actccgactccaaccacagcgacg 3606712
>ref|NM_126959.3| Arabidopsis thaliana DNA binding / DNA-directed DNA polymerase AT2G13840 mRNA, complete cds Length = 1428 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 328 ggggtgaaagttcttgccctaacagatcatgataccatggctggtataccggaagc 383 ||||||||||||||| | |||| ||||||||||| ||||||||| | |||||||| Sbjct: 342 ggggtgaaagttctttctttaacggatcatgatactatggctggtgtcccggaagc 397
>gb|AY098965.1| Arabidopsis thaliana At2g13860/F13J11.19 mRNA, complete cds Length = 1302 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 328 ggggtgaaagttcttgccctaacagatcatgataccatggctggtataccggaagc 383 ||||||||||||||| | |||| ||||||||||| ||||||||| | |||||||| Sbjct: 280 ggggtgaaagttctttctttaacggatcatgatactatggctggtgtcccggaagc 335
>gb|AY052289.1| Arabidopsis thaliana At2g13860/F13J11.19 mRNA, complete cds Length = 1369 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 328 ggggtgaaagttcttgccctaacagatcatgataccatggctggtataccggaagc 383 ||||||||||||||| | |||| ||||||||||| ||||||||| | |||||||| Sbjct: 321 ggggtgaaagttctttctttaacggatcatgatactatggctggtgtcccggaagc 376
>emb|BX819556.1|CNS0A9XP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB8ZD11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1392 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 328 ggggtgaaagttcttgccctaacagatcatgataccatggctggtataccggaagc 383 ||||||||||||||| | |||| ||||||||||| ||||||||| | |||||||| Sbjct: 320 ggggtgaaagttctttctttaacggatcatgatactatggctggtgtcccggaagc 375
>emb|BX820423.1|CNS0A9P9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH30ZG01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1341 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 328 ggggtgaaagttcttgccctaacagatcatgataccatggctggtataccggaagc 383 ||||||||||||||| | |||| ||||||||||| ||||||||| | |||||||| Sbjct: 340 ggggtgaaagttctttctttaacggatcatgatactatggctggtgtcccggaagc 395
>emb|BX819776.1|CNS0A9G6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS25ZG11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1430 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 328 ggggtgaaagttcttgccctaacagatcatgataccatggctggtataccggaagc 383 ||||||||||||||| | |||| ||||||||||| ||||||||| | |||||||| Sbjct: 342 ggggtgaaagttctttctttaacggatcatgatactatggctggtgtcccggaagc 397
>gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J11 map mi398, complete sequence Length = 104009 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 330 ggtgaaagttcttgccctaacagatcatgataccatggctggtataccggaagc 383 ||||||||||||| | |||| ||||||||||| ||||||||| | |||||||| Sbjct: 98417 ggtgaaagttctttctttaacggatcatgatactatggctggtgtcccggaagc 98364
>gb|AC006218.4| Arabidopsis thaliana chromosome 2 clone F17L24 map GPC6, complete sequence Length = 90161 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 330 ggtgaaagttcttgccctaacagatcatgataccatggctggtataccggaagc 383 ||||||||||||| | |||| ||||||||||| ||||||||| | |||||||| Sbjct: 57443 ggtgaaagttctttctttaacggatcatgatactatggctggtgtcccggaagc 57496
>gb|AC011383.6| Homo sapiens chromosome 5 clone CTB-140J7, complete sequence Length = 93407 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 253 gagcttcactcccactccaaccacag 278 |||||||||||||||||||||||||| Sbjct: 31435 gagcttcactcccactccaaccacag 31410
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 agcgccgaccaggccctggcc 120 ||||||||||||||||||||| Sbjct: 1542313 agcgccgaccaggccctggcc 1542293 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 aaattcctggtgctggtgaa 477 |||||||||||||||||||| Sbjct: 3206459 aaattcctggtgctggtgaa 3206440
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cgccgaccaggccctggccct 122 ||||||||||||||||||||| Sbjct: 24961 cgccgaccaggccctggccct 24941
>gb|AC125292.4| Drosophila melanogaster X BAC CH223-5O10 (Children's Hospital Oakland Research Institute Drosophila melanogaster sheared DNA BAC Library) complete sequence Length = 95026 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 agaagaagacgaagacgagcagggg 80 ||||||||| ||||||||||||||| Sbjct: 47880 agaagaagaagaagacgagcagggg 47904
>gb|AE003484.3| Drosophila melanogaster chromosome X, section 36 of 74 of the complete sequence Length = 314111 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 agaagaagacgaagacgagcagggg 80 ||||||||| ||||||||||||||| Sbjct: 48290 agaagaagaagaagacgagcagggg 48314
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 cgacggccgatgccgccgtgg 190 ||||||||||||||||||||| Sbjct: 1270222 cgacggccgatgccgccgtgg 1270202
>ref|NM_202925.2| Arabidopsis thaliana WRKY11; transcription factor AT4G31550 (WRKY11) transcript variant AT4G31550.3 mRNA, complete cds Length = 1484 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aagaagaagacgaagacgag 74 |||||||||||||||||||| Sbjct: 23 aagaagaagacgaagacgag 4
>ref|NM_119304.3| Arabidopsis thaliana WRKY11; transcription factor AT4G31550 (WRKY11) transcript variant AT4G31550.2 mRNA, complete cds Length = 1147 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aagaagaagacgaagacgag 74 |||||||||||||||||||| Sbjct: 39 aagaagaagacgaagacgag 20
>ref|NM_179228.1| Arabidopsis thaliana WRKY11; transcription factor AT4G31550 (WRKY11) transcript variant AT4G31550.1 mRNA, complete cds Length = 1153 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aagaagaagacgaagacgag 74 |||||||||||||||||||| Sbjct: 39 aagaagaagacgaagacgag 20
>ref|NM_194651.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAa0079B05.24), mRNA Length = 891 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 776 actccgactccaaccacagcgacg 799
>gb|AC120543.7| Mus musculus chromosome 8, clone RP23-330A24, complete sequence Length = 210696 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 aagaagaagacgaagacgagcagg 78 |||||||||| ||||||||||||| Sbjct: 84565 aagaagaagaagaagacgagcagg 84588
>gb|AC145322.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0096N19, complete sequence Length = 178671 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 83657 actccgactccaaccacagcgacg 83634
>gb|AC123646.8| Mus musculus chromosome 19, clone RP23-104P24, complete sequence Length = 189534 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 tgatgagttggacagcatgc 544 |||||||||||||||||||| Sbjct: 6239 tgatgagttggacagcatgc 6258
>gb|AC116601.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0079B05, complete sequence Length = 159382 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 134113 actccgactccaaccacagcgacg 134136
>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03, complete sequence Length = 121466 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 33034 actccgactccaaccacagcgacg 33011
>gb|AC145992.2| Pan troglodytes BAC clone RP43-172K3 from 7, complete sequence Length = 208817 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 atggtatgtgtggcccatca 519 |||||||||||||||||||| Sbjct: 111238 atggtatgtgtggcccatca 111219
>gb|AC123795.4| Mus musculus BAC clone RP24-317K11 from chromosome 5, complete sequence Length = 188616 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 gagcaggggccggaagaagccgag 95 |||||||||||||||| ||||||| Sbjct: 54352 gagcaggggccggaaggagccgag 54375
>ref|XM_503325.1| Yarrowia lipolytica CLIB122, YALI0D26620g predicted mRNA Length = 3774 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 aagaagaagacgaagacgagcagg 78 |||||||||| ||||||||||||| Sbjct: 872 aagaagaagatgaagacgagcagg 895
>emb|AL356962.8| Human DNA sequence from clone RP11-453C2 on chromosome 6 Contains the 5' end of the IMPG1 gene for interphotoreceptor matrix proteoglycan 1, complete sequence Length = 186301 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ccatgggaaccaagaagaag 63 |||||||||||||||||||| Sbjct: 151934 ccatgggaaccaagaagaag 151915
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 agaagccgaggaccagcgcc 105 |||||||||||||||||||| Sbjct: 92868 agaagccgaggaccagcgcc 92849
>gb|AC138378.7| Mus musculus chromosome 19, clone RP24-265D22, complete sequence Length = 153118 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 tgatgagttggacagcatgc 544 |||||||||||||||||||| Sbjct: 76226 tgatgagttggacagcatgc 76207
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 1335401 actccgactccaaccacagcgacg 1335424
>gb|AY059731.1| Arabidopsis thaliana putative putaive DNA-binding protein (At4g31550) mRNA, complete cds Length = 1168 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aagaagaagacgaagacgag 74 |||||||||||||||||||| Sbjct: 39 aagaagaagacgaagacgag 20
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 cctggtgctggtgaacccgt 482 |||||||||||||||||||| Sbjct: 277733 cctggtgctggtgaacccgt 277714
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 cctggtgctggtgaacccgt 482 |||||||||||||||||||| Sbjct: 215471 cctggtgctggtgaacccgt 215452
>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12 Length = 349028 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 cctggtgctggtgaacccgt 482 |||||||||||||||||||| Sbjct: 136961 cctggtgctggtgaacccgt 136980
>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project) Length = 94319 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 aagaagaagacgaagacgag 74 |||||||||||||||||||| Sbjct: 69380 aagaagaagacgaagacgag 69399
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75 Length = 196242 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 aagaagaagacgaagacgag 74 |||||||||||||||||||| Sbjct: 57445 aagaagaagacgaagacgag 57464
>emb|AJ308233.1|TNI308233 Tetraodon nigroviridis aw502783-like gene (partial), af290615-like gene, ak000823-like gene, vav-3 gene, amylase-1 gene, amylase-2 gene and amylase-3 gene Length = 148106 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 actccaaccacagcgacggg 285 |||||||||||||||||||| Sbjct: 19999 actccaaccacagcgacggg 19980
>emb|AL928808.15| Zebrafish DNA sequence from clone DKEY-265H18 in linkage group 20 Contains a CpG island, complete sequence Length = 109407 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 atgtcttcagctcataaatg 404 |||||||||||||||||||| Sbjct: 61154 atgtcttcagctcataaatg 61173
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 cgccgaccaggccctggccctcga 125 ||||||||||||||||||| |||| Sbjct: 4784740 cgccgaccaggccctggccttcga 4784763
>emb|CR392340.11| Zebrafish DNA sequence from clone DKEY-23G12 in linkage group 20, complete sequence Length = 247887 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aaccaagaagaagacgaaga 70 |||||||||||||||||||| Sbjct: 10504 aaccaagaagaagacgaaga 10485
>gb|AC146691.5| Macaca mulatta clone ch250-214a10, complete sequence Length = 152056 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tcccactccaaccacagcga 281 |||||||||||||||||||| Sbjct: 4244 tcccactccaaccacagcga 4225
>gb|AC074282.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0049K09, complete sequence Length = 146576 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 34731 actccgactccaaccacagcgacg 34754
>gb|AC175196.2| Sporobolomyces roseus clone JGIBAIF-21A8, complete sequence Length = 32861 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aagaagaagacgaagacgag 74 |||||||||||||||||||| Sbjct: 12744 aagaagaagacgaagacgag 12725
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 aattcctggagtagaaatta 436 |||||||||||||||||||| Sbjct: 1429570 aattcctggagtagaaatta 1429551
>gb|AC156801.2| Mus musculus BAC clone RP23-142F22 from chromosome 9, complete sequence Length = 197974 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 caagaagaagacgaagacga 73 |||||||||||||||||||| Sbjct: 176829 caagaagaagacgaagacga 176810
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 4748017 actccgactccaaccacagcgacg 4748040 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 487941 actccgactccaaccacagcgacg 487918
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 1335401 actccgactccaaccacagcgacg 1335424
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 aaggtttgatgagttggaca 538 |||||||||||||||||||| Sbjct: 13772659 aaggtttgatgagttggaca 13772640
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 8981027 actccgactccaaccacagcgacg 8981004
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 24146795 actccgactccaaccacagcgacg 24146772
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 caagaagaagacgaagacga 73 |||||||||||||||||||| Sbjct: 43088908 caagaagaagacgaagacga 43088889
>emb|BX827998.1|CNS0A4KB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH42ZH06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1485 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aagaagaagacgaagacgag 74 |||||||||||||||||||| Sbjct: 23 aagaagaagacgaagacgag 4
>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0459B04 Length = 142475 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 caagaagaagacgaagacga 73 |||||||||||||||||||| Sbjct: 85937 caagaagaagacgaagacga 85918
>gb|AC022014.3|AC022014 Homo sapiens chromosome 11 clone RP11-91E22 map 11q, complete sequence Length = 161192 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 accctgccatgggaaccaag 57 |||||||||||||||||||| Sbjct: 66144 accctgccatgggaaccaag 66125
>gb|AC026168.3|AC026168 Homo sapiens chromosome 11 clone RP11-156E23 map 11q, complete sequence Length = 180508 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 accctgccatgggaaccaag 57 |||||||||||||||||||| Sbjct: 100991 accctgccatgggaaccaag 101010
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 124277 actccgactccaaccacagcgacg 124254
>dbj|AP005387.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0084K06 Length = 177895 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 28345 actccgactccaaccacagcgacg 28322
>gb|AY569615.1| Oryza sativa (japonica cultivar-group) MYB transcription factor (Myb) precursor RNA, complete cds Length = 1555 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 caagaagaagacgaagacga 73 |||||||||||||||||||| Sbjct: 147 caagaagaagacgaagacga 128
>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1655_B12 Length = 132736 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 aaggtttgatgagttggaca 538 |||||||||||||||||||| Sbjct: 22143 aaggtttgatgagttggaca 22124
>gb|AC003013.1|AC003013 Human PAC clone RP1-205E24 from Xq23, complete sequence Length = 173452 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 gggaaccaagaagaagacgaagac 71 ||||||||||||||||| |||||| Sbjct: 23686 gggaaccaagaagaagaagaagac 23709
>dbj|AK108158.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-G09, full insert sequence Length = 1117 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 862 actccgactccaaccacagcgacg 885
>dbj|AK066180.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058H19, full insert sequence Length = 1551 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 caagaagaagacgaagacga 73 |||||||||||||||||||| Sbjct: 152 caagaagaagacgaagacga 133
>gb|AC112687.20| Mus musculus chromosome 9, clone RP23-230A14, complete sequence Length = 189775 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 caagaagaagacgaagacga 73 |||||||||||||||||||| Sbjct: 4110 caagaagaagacgaagacga 4091
>dbj|AP006215.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-729P6, complete sequence Length = 189310 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 accctgccatgggaaccaag 57 |||||||||||||||||||| Sbjct: 25169 accctgccatgggaaccaag 25150
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 1335398 actccgactccaaccacagcgacg 1335421
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 4766801 actccgactccaaccacagcgacg 4766824 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 487941 actccgactccaaccacagcgacg 487918
>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 130544 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 actcccactccaaccacagcgacg 283 ||||| |||||||||||||||||| Sbjct: 82371 actccgactccaaccacagcgacg 82394
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 aagaagaagacgaagacgagcagg 78 |||||||||| ||||||||||||| Sbjct: 3543375 aagaagaagatgaagacgagcagg 3543398
>emb|AL844546.8| Mouse DNA sequence from clone RP23-243I3 on chromosome 2, complete sequence Length = 170475 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gccgtggacggcttcctgcc 203 |||||||||||||||||||| Sbjct: 100001 gccgtggacggcttcctgcc 100020 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,946,659 Number of Sequences: 3902068 Number of extensions: 3946659 Number of successful extensions: 85328 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84218 Number of HSP's gapped (non-prelim): 1106 length of query: 568 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 545 effective length of database: 17,143,297,704 effective search space: 9343097248680 effective search space used: 9343097248680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)