ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart35f11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 75.8 bits (38), Expect = 1e-10 Identities = 137/170 (80%) Strand = Plus / Plus Query: 125 acaagggaaggatggtcgacgccactcaccctccacaacaacttctggctgagatcacac 184 ||||||||||||||||| || ||||| ||||| ||||||||| || || ||||||||| Sbjct: 4196669 acaagggaaggatggtccaccccacttaccctttacaacaactgttgacttagatcacac 4196728 Query: 185 atggcccaaaagttcatgctcgtgagagacaacttcaagccccggcgcgacgacatcatc 244 |||| | || |||||||| || | || ||||| |||||||| | |||||| ||||| Sbjct: 4196729 atggtcaccaaattcatgcttgtcaaggagaactttaagccccgccatgacgacgtcatc 4196788 Query: 245 ctcgccacccaccccaagagcggcaccacctggctcaaggccctcgcctt 294 |||| || |||||||||||| |||| || ||| | |||||||| ||||| Sbjct: 4196789 ctcgtgacacaccccaagagcagcactacttggttgaaggcccttgcctt 4196838 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttc 295 ||||||||| | ||||||| |||||||| |||||||||||| ||||||||| Sbjct: 21712688 tcctcgccagcttccccaagtccggcaccagctggctcaaggcgctcgccttc 21712740
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttcaccatct 302 ||||||||||| |||| ||| |||||||||||||||||||||| ||| ||||| |||| Sbjct: 25560359 tcctcgccacctacccaaagtgcggcaccacctggctcaaggcgctctccttcgacatcg 25560300 Query: 303 ccacccgctcccgc 316 ||| |||||||||| Sbjct: 25560299 ccaaccgctcccgc 25560286 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttcaccatct 302 ||||||||||| |||| ||| |||||||||||||||||||||| ||| ||||| ||||| Sbjct: 25557991 tcctcgccacctacccaaagtgcggcaccacctggctcaaggcgctctccttcgccatcg 25557932 Query: 303 ccacccgc 310 ||| |||| Sbjct: 25557931 ccaaccgc 25557924 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttcaccatct 302 ||||||||||| |||| ||| ||||||||||||||||||||| ||| ||||| ||||| Sbjct: 25528307 tcctcgccacctacccaaagtgcggcaccacctggctcaaggtgctctccttcgccatcg 25528248 Query: 303 ccacccgc 310 ||| |||| Sbjct: 25528247 ccaaccgc 25528240 Score = 48.1 bits (24), Expect = 0.029 Identities = 30/32 (93%) Strand = Plus / Minus Query: 417 cgctcccttcgccgaggctgctctccacccac 448 ||||||| || ||||||||||||||||||||| Sbjct: 25528135 cgctcccctccccgaggctgctctccacccac 25528104 Score = 44.1 bits (22), Expect = 0.45 Identities = 31/34 (91%) Strand = Plus / Minus Query: 417 cgctcccttcgccgaggctgctctccacccacct 450 ||||||| || |||||||| |||||||||||||| Sbjct: 25560173 cgctcccgtcaccgaggcttctctccacccacct 25560140
>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0523B07 Length = 170510 Score = 75.8 bits (38), Expect = 1e-10 Identities = 137/170 (80%) Strand = Plus / Plus Query: 125 acaagggaaggatggtcgacgccactcaccctccacaacaacttctggctgagatcacac 184 ||||||||||||||||| || ||||| ||||| ||||||||| || || ||||||||| Sbjct: 20428 acaagggaaggatggtccaccccacttaccctttacaacaactgttgacttagatcacac 20487 Query: 185 atggcccaaaagttcatgctcgtgagagacaacttcaagccccggcgcgacgacatcatc 244 |||| | || |||||||| || | || ||||| |||||||| | |||||| ||||| Sbjct: 20488 atggtcaccaaattcatgcttgtcaaggagaactttaagccccgccatgacgacgtcatc 20547 Query: 245 ctcgccacccaccccaagagcggcaccacctggctcaaggccctcgcctt 294 |||| || |||||||||||| |||| || ||| | |||||||| ||||| Sbjct: 20548 ctcgtgacacaccccaagagcagcactacttggttgaaggcccttgcctt 20597
>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0686C03 Length = 164529 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttcaccatct 302 ||||||||||| |||| ||| |||||||||||||||||||||| ||| ||||| |||| Sbjct: 47050 tcctcgccacctacccaaagtgcggcaccacctggctcaaggcgctctccttcgacatcg 46991 Query: 303 ccacccgctcccgc 316 ||| |||||||||| Sbjct: 46990 ccaaccgctcccgc 46977 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttcaccatct 302 ||||||||||| |||| ||| |||||||||||||||||||||| ||| ||||| ||||| Sbjct: 44682 tcctcgccacctacccaaagtgcggcaccacctggctcaaggcgctctccttcgccatcg 44623 Query: 303 ccacccgc 310 ||| |||| Sbjct: 44622 ccaaccgc 44615 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttcaccatct 302 ||||||||||| |||| ||| ||||||||||||||||||||| ||| ||||| ||||| Sbjct: 14998 tcctcgccacctacccaaagtgcggcaccacctggctcaaggtgctctccttcgccatcg 14939 Query: 303 ccacccgc 310 ||| |||| Sbjct: 14938 ccaaccgc 14931 Score = 48.1 bits (24), Expect = 0.029 Identities = 30/32 (93%) Strand = Plus / Minus Query: 417 cgctcccttcgccgaggctgctctccacccac 448 ||||||| || ||||||||||||||||||||| Sbjct: 14826 cgctcccctccccgaggctgctctccacccac 14795 Score = 44.1 bits (22), Expect = 0.45 Identities = 31/34 (91%) Strand = Plus / Minus Query: 417 cgctcccttcgccgaggctgctctccacccacct 450 ||||||| || |||||||| |||||||||||||| Sbjct: 46864 cgctcccgtcaccgaggcttctctccacccacct 46831
>ref|NM_188988.1| Oryza sativa (japonica cultivar-group), mRNA Length = 999 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttcaccatct 302 ||||||||||| |||| ||| |||||||||||||||||||||| ||| ||||| ||||| Sbjct: 209 tcctcgccacctacccaaagtgcggcaccacctggctcaaggcgctctccttcgccatcg 268 Query: 303 ccacccgc 310 ||| |||| Sbjct: 269 ccaaccgc 276
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 256 ccccaagagcggcaccacctggctcaaggccctcgccttc 295 ||||||| |||||||||| ||||||||||||||||||||| Sbjct: 2542869 ccccaagtgcggcaccacgtggctcaaggccctcgccttc 2542830 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 257 cccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||| |||||||||| ||||||||||||||||||||| Sbjct: 2406825 cccaagtgcggcaccacgtggctcaaggccctcgccttc 2406787 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgc 291 ||||||| | || ||||||| |||||||||| ||||||||||||||||| Sbjct: 2550945 tcctcgcgagcctccccaagtgcggcaccacgtggctcaaggccctcgc 2550897 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 257 cccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||| |||||||||| |||||||||||||| |||||| Sbjct: 24853002 cccaagtgcggcaccacgtggctcaaggccctggccttc 24852964 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 255 accccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||||| |||||||||| ||||||||||| || |||||| Sbjct: 24791841 accccaagtgcggcaccacgtggctcaaggcgctggccttc 24791881
>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022E03 Length = 163032 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 256 ccccaagagcggcaccacctggctcaaggccctcgccttc 295 ||||||| |||||||||| ||||||||||||||||||||| Sbjct: 107849 ccccaagtgcggcaccacgtggctcaaggccctcgccttc 107810 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgc 291 ||||||| | || ||||||| |||||||||| ||||||||||||||||| Sbjct: 115925 tcctcgcgagcctccccaagtgcggcaccacgtggctcaaggccctcgc 115877
>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0711H09 Length = 185858 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttcaccatct 302 ||||||||||| |||| ||| ||||||||||||||||||||| ||| ||||| ||||| Sbjct: 159623 tcctcgccacctacccaaagtgcggcaccacctggctcaaggtgctctccttcgccatcg 159564 Query: 303 ccacccgc 310 ||| |||| Sbjct: 159563 ccaaccgc 159556 Score = 48.1 bits (24), Expect = 0.029 Identities = 30/32 (93%) Strand = Plus / Minus Query: 417 cgctcccttcgccgaggctgctctccacccac 448 ||||||| || ||||||||||||||||||||| Sbjct: 159451 cgctcccctccccgaggctgctctccacccac 159420
>ref|NM_183698.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 235 cgacatcatcctcgccacccaccccaagagcggcaccacctggctcaaggc 285 |||||||||| |||||||| ||||||| | |||||||||||||||||||| Sbjct: 216 cgacatcatcatcgccaccttccccaagtgtggcaccacctggctcaaggc 266
>ref|NM_186313.1| Oryza sativa (japonica cultivar-group), mRNA Length = 501 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 257 cccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||| |||||||||| ||||||||||||||||||||| Sbjct: 209 cccaagtgcggcaccacgtggctcaaggccctcgccttc 171
>emb|AJ698082.1| Oryza sativa (japonica cultivar-group) mRNA for steroid sulfotransferase (ss1 gene) Length = 1096 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 235 cgacatcatcctcgccacccaccccaagagcggcaccacctggctcaaggc 285 |||||||||| |||||||| ||||||| | |||||||||||||||||||| Sbjct: 229 cgacatcatcatcgccaccttccccaagtgtggcaccacctggctcaaggc 279
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 235 cgacatcatcctcgccacccaccccaagagcggcaccacctggctcaaggc 285 |||||||||| |||||||| ||||||| | |||||||||||||||||||| Sbjct: 11687245 cgacatcatcatcgccaccttccccaagtgtggcaccacctggctcaaggc 11687195 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 448 cctcccactctcgctgctcccgccggccg 476 |||||| ||| |||||||||||||||||| Sbjct: 7469847 cctccccctcgcgctgctcccgccggccg 7469875 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 cgccggccgtctccgccgtc 487 |||||||||||||||||||| Sbjct: 42607738 cgccggccgtctccgccgtc 42607719
>dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0551A11 Length = 132384 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 235 cgacatcatcctcgccacccaccccaagagcggcaccacctggctcaaggc 285 |||||||||| |||||||| ||||||| | |||||||||||||||||||| Sbjct: 126369 cgacatcatcatcgccaccttccccaagtgtggcaccacctggctcaaggc 126319
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1011A07 Length = 150590 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 235 cgacatcatcctcgccacccaccccaagagcggcaccacctggctcaaggc 285 |||||||||| |||||||| ||||||| | |||||||||||||||||||| Sbjct: 26413 cgacatcatcatcgccaccttccccaagtgtggcaccacctggctcaaggc 26363
>dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077B15 Length = 139345 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 257 cccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||| |||||||||| ||||||||||||||||||||| Sbjct: 109833 cccaagtgcggcaccacgtggctcaaggccctcgccttc 109795
>dbj|AK105552.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A12, full insert sequence Length = 1407 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 235 cgacatcatcctcgccacccaccccaagagcggcaccacctggctcaaggc 285 |||||||||| |||||||| ||||||| | |||||||||||||||||||| Sbjct: 288 cgacatcatcatcgccaccttccccaagtgtggcaccacctggctcaaggc 338
>gb|AY108956.1| Zea mays PCO130274 mRNA sequence Length = 631 Score = 61.9 bits (31), Expect = 2e-06 Identities = 85/103 (82%) Strand = Plus / Plus Query: 411 tcgagacgctcccttcgccgaggctgctctccacccacctcccactctcgctgctcccgc 470 |||||| ||| || ||||||||||||||| || ||||| || ||||| |||||||||| Sbjct: 503 tcgagaggctgccgtcgccgaggctgctcgggacgcacctgcccctctccctgctcccgc 562 Query: 471 cggccgtctccgccgtcggctgcagggtcgtgtacctctgccg 513 ||||||| || || ||||||| | ||||||||||| ||||| Sbjct: 563 cggccgtggccacctccggctgccgcgtcgtgtacctgtgccg 605 Score = 46.1 bits (23), Expect = 0.11 Identities = 65/79 (82%) Strand = Plus / Plus Query: 232 cgacgacatcatcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgc 291 |||||||||| ||||||||||| ||| || |||| ||||| ||||| ||||| || || Sbjct: 312 cgacgacatcgtcctcgccacctacctgaaatgcgggaccacgtggctgaaggcgctggc 371 Query: 292 cttcaccatctccacccgc 310 |||| ||||| | |||||| Sbjct: 372 cttcgccatcacgacccgc 390 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 323 ttcgccgacgccgaccaccccctgc 347 ||||||| ||||||||||||||||| Sbjct: 409 ttcgccgccgccgaccaccccctgc 433
>ref|NM_195276.1| Oryza sativa (japonica cultivar-group) putative flavonol 3-sulfotransferase (OSJNBb0038H12.7), mRNA Length = 1005 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 246 tcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||| || ||||||| |||||||||| |||||||||||||| |||||| Sbjct: 194 tcgccagcctccccaagtgcggcaccacgtggctcaaggccctggccttc 243
>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0038H12 map E60284SA, complete sequence Length = 139190 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 246 tcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||| || ||||||| |||||||||| |||||||||||||| |||||| Sbjct: 19406 tcgccagcctccccaagtgcggcaccacgtggctcaaggccctggccttc 19455
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 246 tcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||| || ||||||| |||||||||| |||||||||||||| |||||| Sbjct: 5904477 tcgccagcctccccaagtgcggcaccacgtggctcaaggccctggccttc 5904428
>dbj|AK066828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075L15, full insert sequence Length = 1243 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 246 tcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||| || ||||||| |||||||||| |||||||||||||| |||||| Sbjct: 302 tcgccagcctccccaagtgcggcaccacgtggctcaaggccctggccttc 351
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 246 tcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||| || ||||||| |||||||||| |||||||||||||| |||||| Sbjct: 5905663 tcgccagcctccccaagtgcggcaccacgtggctcaaggccctggccttc 5905614
>ref|XM_476630.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1644 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgc 291 ||||||| | || ||||||| |||||||||| ||||||||||||||||| Sbjct: 281 tcctcgcgagcctccccaagtgcggcaccacgtggctcaaggccctcgc 329
>gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0025K21, complete sequence Length = 146539 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttc 295 ||||||||| | ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 115787 tcctcgccagcttccccaagtccggcaccacctggctcaaggcgctcgccttc 115839 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 256 ccccaagagcggcaccacctggctcaaggccctcgccttc 295 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 74334 ccccaagtccggcaccacctggctcaaggcgctcgccttc 74373 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 265 cggcaccacctggctcaaggccctcgccttc 295 ||||||||||||||||||||| || |||||| Sbjct: 83596 cggcaccacctggctcaaggcgcttgccttc 83626
>gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1024A10, complete sequence Length = 157609 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttc 295 ||||||||| | ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 141780 tcctcgccagcttccccaagtccggcaccacctggctcaaggcgctcgccttc 141832 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 256 ccccaagagcggcaccacctggctcaaggccctcgccttc 295 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 100327 ccccaagtccggcaccacctggctcaaggcgctcgccttc 100366 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 265 cggcaccacctggctcaaggccctcgccttc 295 ||||||||||||||||||||| || |||||| Sbjct: 109589 cggcaccacctggctcaaggcgcttgccttc 109619
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttc 295 ||||||||| | ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 17387005 tcctcgccagcttccccaagtccggcaccacctggctcaaggcgctcgccttc 17387057 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 256 ccccaagagcggcaccacctggctcaaggccctcgccttc 295 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 17345403 ccccaagtccggcaccacctggctcaaggcgctcgccttc 17345442 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 257 cccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||| |||||||||| |||||||||||||| |||||| Sbjct: 8623267 cccaagtgcggcaccacgtggctcaaggccctggccttc 8623229 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 265 cggcaccacctggctcaaggccctcgccttc 295 ||||||||||||||||||||| || |||||| Sbjct: 17354665 cggcaccacctggctcaaggcgcttgccttc 17354695 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 269 accacctggctcaaggccctcgcctt 294 |||||||||||||| ||||||||||| Sbjct: 14537126 accacctggctcaaagccctcgcctt 14537101 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 tcgccgacgccgaccaccccctgcg 348 |||||||||||||||| |||||||| Sbjct: 3288388 tcgccgacgccgaccatcccctgcg 3288412 Score = 40.1 bits (20), Expect = 7.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 246 tcgccacccaccccaagagcggcaccacctggctcaaggc 285 |||||||| ||||||| ||||||||| ||||||||||| Sbjct: 1892880 tcgccaccttccccaagtccggcaccacatggctcaaggc 1892841
>dbj|AK061003.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H02, full insert sequence Length = 1222 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttc 295 ||||||||| | ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 231 tcctcgccagcttccccaagtccggcaccacctggctcaaggcgctcgccttc 283
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttc 295 ||||||||| | ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 17480715 tcctcgccagcttccccaagtccggcaccacctggctcaaggcgctcgccttc 17480767 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 256 ccccaagagcggcaccacctggctcaaggccctcgccttc 295 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 17439262 ccccaagtccggcaccacctggctcaaggcgctcgccttc 17439301 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 257 cccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||| |||||||||| |||||||||||||| |||||| Sbjct: 8694030 cccaagtgcggcaccacgtggctcaaggccctggccttc 8693992 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 265 cggcaccacctggctcaaggccctcgccttc 295 ||||||||||||||||||||| || |||||| Sbjct: 17448524 cggcaccacctggctcaaggcgcttgccttc 17448554 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 269 accacctggctcaaggccctcgcctt 294 |||||||||||||| ||||||||||| Sbjct: 14619127 accacctggctcaaagccctcgcctt 14619102 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 tcgccgacgccgaccaccccctgcg 348 |||||||||||||||| |||||||| Sbjct: 3297101 tcgccgacgccgaccatcccctgcg 3297125 Score = 40.1 bits (20), Expect = 7.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 246 tcgccacccaccccaagagcggcaccacctggctcaaggc 285 |||||||| ||||||| ||||||||| ||||||||||| Sbjct: 1890601 tcgccaccttccccaagtccggcaccacatggctcaaggc 1890562
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 264 gcggcaccacctggctcaaggccctcgccttc 295 |||||||||||||||||||||| ||||||||| Sbjct: 9822675 gcggcaccacctggctcaaggcgctcgccttc 9822644 Score = 40.1 bits (20), Expect = 7.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 246 tcgccacccaccccaagagcggcaccacctggctcaaggc 285 |||||||| ||||||| ||||||||| ||||||||||| Sbjct: 1822172 tcgccaccttccccaagtccggcaccacatggctcaaggc 1822133
>dbj|AK070224.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042G18, full insert sequence Length = 1207 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 264 gcggcaccacctggctcaaggccctcgccttc 295 |||||||||||||||||||||| ||||||||| Sbjct: 274 gcggcaccacctggctcaaggcgctcgccttc 305
>dbj|AK061183.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-D11, full insert sequence Length = 1225 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 256 ccccaagagcggcaccacctggctcaaggccctcgccttc 295 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 269 ccccaagtccggcaccacctggctcaaggcgctcgccttc 308
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 264 gcggcaccacctggctcaaggccctcgccttc 295 |||||||||||||||||||||| ||||||||| Sbjct: 9822560 gcggcaccacctggctcaaggcgctcgccttc 9822529 Score = 40.1 bits (20), Expect = 7.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 246 tcgccacccaccccaagagcggcaccacctggctcaaggc 285 |||||||| ||||||| ||||||||| ||||||||||| Sbjct: 1822150 tcgccaccttccccaagtccggcaccacatggctcaaggc 1822111
>emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb0112E17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 140806 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 264 gcggcaccacctggctcaaggccctcgccttc 295 |||||||||||||||||||||| ||||||||| Sbjct: 109795 gcggcaccacctggctcaaggcgctcgccttc 109826
>gb|AC145366.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0014O08 map near S2137, complete sequence Length = 134033 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 257 cccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||| |||||||||| |||||||||||||| |||||| Sbjct: 34433 cccaagtgcggcaccacgtggctcaaggccctggccttc 34395
>dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06 Length = 162411 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 257 cccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||| |||||||||| |||||||||||||| |||||| Sbjct: 36634 cccaagtgcggcaccacgtggctcaaggccctggccttc 36596
>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0493C06 Length = 158923 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 257 cccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||| |||||||||| |||||||||||||| |||||| Sbjct: 87453 cccaagtgcggcaccacgtggctcaaggccctggccttc 87415 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 255 accccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||||| |||||||||| ||||||||||| || |||||| Sbjct: 26292 accccaagtgcggcaccacgtggctcaaggcgctggccttc 26332
>gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0043I04, complete sequence Length = 145191 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 243 tcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgccttc 295 ||||||||| | ||||||| |||||||| |||||||||||| ||||||||| Sbjct: 58708 tcctcgccagcttccccaagtccggcaccagctggctcaaggcgctcgccttc 58760
>dbj|AK105239.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B04, full insert sequence Length = 1369 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 255 accccaagagcggcaccacctggctcaaggccctcgccttc 295 |||||||| |||||||||| ||||||||||| || |||||| Sbjct: 314 accccaagtgcggcaccacgtggctcaaggcgctggccttc 354
>ref|XM_450330.1| Oryza sativa (japonica cultivar-group), mRNA Length = 843 Score = 48.1 bits (24), Expect = 0.029 Identities = 66/80 (82%) Strand = Plus / Plus Query: 215 aacttcaagccccggcgcgacgacatcatcctcgccacccaccccaagagcggcaccacc 274 ||||| |||||||| | |||||| ||||||||| || |||||||||||| |||| || Sbjct: 31 aactttaagccccgccatgacgacgtcatcctcgtgacacaccccaagagcagcactact 90 Query: 275 tggctcaaggccctcgcctt 294 ||| | |||||||| ||||| Sbjct: 91 tggttgaaggcccttgcctt 110
>ref|XM_309705.2| Anopheles gambiae str. PEST ENSANGP00000012697 (ENSANGG00000010208), partial mRNA Length = 1077 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 255 accccaagagcggcaccacctgg 277 ||||||||||||||||||||||| Sbjct: 227 accccaagagcggcaccacctgg 249
>gb|AC146526.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0027D12 map near 50283S, complete sequence Length = 128988 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 269 accacctggctcaaggccctcgcctt 294 |||||||||||||| ||||||||||| Sbjct: 36539 accacctggctcaaagccctcgcctt 36514
>gb|AC134438.3| Mus musculus BAC clone RP24-470G3 from chromosome 5, complete sequence Length = 140395 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 22 cttccacctctcactccctctc 43 |||||||||||||||||||||| Sbjct: 93167 cttccacctctcactccctctc 93146
>gb|AC008712.8| Homo sapiens chromosome 5 clone CTB-7N3, complete sequence Length = 147952 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 cacacacacactcttccacctc 31 |||||||||||||||||||||| Sbjct: 91754 cacacacacactcttccacctc 91775
>gb|AC091882.3| Homo sapiens chromosome 5 clone RP11-101A19, complete sequence Length = 126486 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 cacacacacactcttccacctc 31 |||||||||||||||||||||| Sbjct: 31945 cacacacacactcttccacctc 31966
>dbj|AK059900.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-G02, full insert sequence Length = 1103 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 269 accacctggctcaaggccctcgcctt 294 |||||||||||||| ||||||||||| Sbjct: 188 accacctggctcaaagccctcgcctt 213
>ref|NM_188659.1| Oryza sativa (japonica cultivar-group), Ozsa8262 predicted mRNA Length = 645 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 448 cctcccactctcgctgctcccgccggccg 476 |||||| ||| |||||||||||||||||| Sbjct: 36 cctccccctcgcgctgctcccgccggccg 64
>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence Length = 154441 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 324 tcgccgacgccgaccaccccctgcg 348 |||||||||||||||| |||||||| Sbjct: 26597 tcgccgacgccgaccatcccctgcg 26573
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 cgcgacgacatcatcctcgcc 250 ||||||||||||||||||||| Sbjct: 1029007 cgcgacgacatcatcctcgcc 1028987
>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence Length = 161073 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 324 tcgccgacgccgaccaccccctgcg 348 |||||||||||||||| |||||||| Sbjct: 125898 tcgccgacgccgaccatcccctgcg 125874
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 cgcgacgacatcatcctcgcc 250 ||||||||||||||||||||| Sbjct: 1285197 cgcgacgacatcatcctcgcc 1285177
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 465 tcccgccggccgtctccgccg 485 ||||||||||||||||||||| Sbjct: 26311152 tcccgccggccgtctccgccg 26311132
>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete sequence Length = 134728 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 465 tcccgccggccgtctccgccg 485 ||||||||||||||||||||| Sbjct: 79488 tcccgccggccgtctccgccg 79508
>gb|AY257863.1| Oryza sativa (japonica cultivar-group) chromosome 11 genomic sequence Length = 42748 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 tcgccgacgccgaccaccccctgcg 348 |||||||||||||||| |||||||| Sbjct: 42606 tcgccgacgccgaccatcccctgcg 42630
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 465 tcccgccggccgtctccgccg 485 ||||||||||||||||||||| Sbjct: 26402461 tcccgccggccgtctccgccg 26402441
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.8 Identities = 51/61 (83%) Strand = Plus / Minus Query: 235 cgacatcatcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgcctt 294 |||| |||||||||||||| |||||| |||| | || ||||||||||| |||||||| Sbjct: 27987092 cgacgtcatcctcgccaccatgcccaagtccggctcgacgtggctcaaggcgctcgcctt 27987033 Query: 295 c 295 | Sbjct: 27987032 c 27987032
>gb|AE004518.1| Pseudomonas aeruginosa PAO1, section 79 of 529 of the complete genome Length = 10647 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 cgcgacgacatcatcctcgcc 250 ||||||||||||||||||||| Sbjct: 5086 cgcgacgacatcatcctcgcc 5066
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0702F03 Length = 141111 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 448 cctcccactctcgctgctcccgccggccg 476 |||||| ||| |||||||||||||||||| Sbjct: 130875 cctccccctcgcgctgctcccgccggccg 130903
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0708G02 Length = 168976 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 448 cctcccactctcgctgctcccgccggccg 476 |||||| ||| |||||||||||||||||| Sbjct: 18639 cctccccctcgcgctgctcccgccggccg 18667
>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_A08 Length = 119304 Score = 42.1 bits (21), Expect = 1.8 Identities = 51/61 (83%) Strand = Plus / Minus Query: 235 cgacatcatcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgcctt 294 |||| |||||||||||||| |||||| |||| | || ||||||||||| |||||||| Sbjct: 30754 cgacgtcatcctcgccaccatgcccaagtccggctcgacgtggctcaaggcgctcgcctt 30695 Query: 295 c 295 | Sbjct: 30694 c 30694
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 42.1 bits (21), Expect = 1.8 Identities = 51/61 (83%) Strand = Plus / Minus Query: 235 cgacatcatcctcgccacccaccccaagagcggcaccacctggctcaaggccctcgcctt 294 |||| |||||||||||||| |||||| |||| | || ||||||||||| |||||||| Sbjct: 114544 cgacgtcatcctcgccaccatgcccaagtccggctcgacgtggctcaaggcgctcgcctt 114485 Query: 295 c 295 | Sbjct: 114484 c 114484
>dbj|AK104591.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-A11, full insert sequence Length = 955 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 448 cctcccactctcgctgctcccgccggccg 476 |||||| ||| |||||||||||||||||| Sbjct: 106 cctccccctcgcgctgctcccgccggccg 134
>dbj|AK102961.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115I02, full insert sequence Length = 1000 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 448 cctcccactctcgctgctcccgccggccg 476 |||||| ||| |||||||||||||||||| Sbjct: 112 cctccccctcgcgctgctcccgccggccg 140
>dbj|AK059862.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-C09, full insert sequence Length = 1027 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 448 cctcccactctcgctgctcccgccggccg 476 |||||| ||| |||||||||||||||||| Sbjct: 138 cctccccctcgcgctgctcccgccggccg 166
>ref|NM_189405.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1503 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 cgccggccgtctccgccgtc 487 |||||||||||||||||||| Sbjct: 370 cgccggccgtctccgccgtc 351
>gb|DQ149987.1| Streptomyces neyagawaensis concanamycin A biosynthetic gene cluster, complete sequence Length = 99892 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 tcgccgacgccgaccaccccctgc 347 |||||| ||||||||||||||||| Sbjct: 46602 tcgccgccgccgaccaccccctgc 46625
>gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence Length = 130161 Score = 40.1 bits (20), Expect = 7.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 246 tcgccacccaccccaagagcggcaccacctggctcaaggc 285 |||||||| ||||||| ||||||||| ||||||||||| Sbjct: 24536 tcgccaccttccccaagtccggcaccacatggctcaaggc 24497
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 40.1 bits (20), Expect = 7.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 246 tcgccacccaccccaagagcggcaccacctggctcaaggc 285 |||||||| ||||||| ||||||||| ||||||||||| Sbjct: 110710 tcgccaccttccccaagtccggcaccacatggctcaaggc 110671
>ref|XM_752062.1| Ustilago maydis 521 hypothetical protein (UM01008.1) partial mRNA Length = 6918 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 acttcctcgagacgctccct 424 |||||||||||||||||||| Sbjct: 4170 acttcctcgagacgctccct 4189
>gb|AC125162.4| Mus musculus BAC clone RP24-421D9 from chromosome 8, complete sequence Length = 206643 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atctgaagaagctctggtag 113 |||||||||||||||||||| Sbjct: 176061 atctgaagaagctctggtag 176042
>emb|AL137250.17| Human DNA sequence from clone RP11-347L8 on chromosome 13, complete sequence Length = 110733 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 cacacacacactcttccacc 29 |||||||||||||||||||| Sbjct: 5572 cacacacacactcttccacc 5553
>gb|AY164486.1| Mus musculus polycystic kidney disease 1-like 3 (Pkd1l3) mRNA, complete cds Length = 6456 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atctgaagaagctctggtag 113 |||||||||||||||||||| Sbjct: 6166 atctgaagaagctctggtag 6147
>ref|NM_001039700.1| Mus musculus polycystic kidney disease 1 like 3 (Pkd1l3), transcript variant 1a, mRNA Length = 6606 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atctgaagaagctctggtag 113 |||||||||||||||||||| Sbjct: 6196 atctgaagaagctctggtag 6177
>ref|NM_181544.1| Mus musculus polycystic kidney disease 1 like 3 (Pkd1l3), mRNA Length = 6456 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atctgaagaagctctggtag 113 |||||||||||||||||||| Sbjct: 6166 atctgaagaagctctggtag 6147
>gb|AC090936.8| Homo sapiens chromosome 18, clone RP11-731I21, complete sequence Length = 151235 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 cccacacacacactcttcca 27 |||||||||||||||||||| Sbjct: 109901 cccacacacacactcttcca 109920
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 tctgaagaagctctggtagc 114 |||||||||||||||||||| Sbjct: 2098349 tctgaagaagctctggtagc 2098368
>gb|AC011498.7| Homo sapiens chromosome 19 clone CTB-50L17, complete sequence Length = 273403 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 cttcaccatctccacccgct 311 |||||||||||||||||||| Sbjct: 118397 cttcaccatctccacccgct 118416
>gb|DQ382350.1| Mus musculus polycystic kidney disease 1-like 3 variant 3 (Pkd1l3) mRNA, partial cds, alternatively spliced Length = 2450 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atctgaagaagctctggtag 113 |||||||||||||||||||| Sbjct: 1986 atctgaagaagctctggtag 1967
>gb|DQ382349.1| Mus musculus polycystic kidney disease 1-like 3 variant 2 (Pkd1l3) mRNA, partial cds, alternatively spliced Length = 2405 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atctgaagaagctctggtag 113 |||||||||||||||||||| Sbjct: 1986 atctgaagaagctctggtag 1967
>gb|DQ382345.1| Mus musculus polycystic kidney disease 1-like 3 variant 1a (Pkd1l3) mRNA, complete cds, alternatively spliced Length = 6606 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atctgaagaagctctggtag 113 |||||||||||||||||||| Sbjct: 6196 atctgaagaagctctggtag 6177
>gb|DQ382344.1| Mus musculus polycystic kidney disease 1-like 3 variant 1b (Pkd1l3) mRNA, complete cds, alternatively spliced Length = 6576 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atctgaagaagctctggtag 113 |||||||||||||||||||| Sbjct: 6166 atctgaagaagctctggtag 6147
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0458E05 Length = 193577 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 cgccggccgtctccgccgtc 487 |||||||||||||||||||| Sbjct: 128621 cgccggccgtctccgccgtc 128602
>gb|AC079610.4| Homo sapiens BAC clone RP11-105N14 from 2, complete sequence Length = 161031 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cacatggcccaaaagttcat 201 |||||||||||||||||||| Sbjct: 105279 cacatggcccaaaagttcat 105298
>dbj|AB036430.1| Oncorhynchus mykiss SUMO-1 mRNA for small ubiquitin-related protein 1, complete cds Length = 670 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 acgacccatctgaagaagct 106 |||||||||||||||||||| Sbjct: 169 acgacccatctgaagaagct 188
>dbj|AK073175.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023J10, full insert sequence Length = 1746 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 cgccggccgtctccgccgtc 487 |||||||||||||||||||| Sbjct: 381 cgccggccgtctccgccgtc 362
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cgcgacgacatcatcctcgc 249 |||||||||||||||||||| Sbjct: 953961 cgcgacgacatcatcctcgc 953942
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cgcgacgacatcatcctcgc 249 |||||||||||||||||||| Sbjct: 892917 cgcgacgacatcatcctcgc 892898
>emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128619 Score = 40.1 bits (20), Expect = 7.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 246 tcgccacccaccccaagagcggcaccacctggctcaaggc 285 |||||||| ||||||| ||||||||| ||||||||||| Sbjct: 16890 tcgccaccttccccaagtccggcaccacatggctcaaggc 16851
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132026 Score = 40.1 bits (20), Expect = 7.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 246 tcgccacccaccccaagagcggcaccacctggctcaaggc 285 |||||||| ||||||| ||||||||| ||||||||||| Sbjct: 18310 tcgccaccttccccaagtccggcaccacatggctcaaggc 18349
>gb|AC132138.2| Mus musculus BAC clone RP23-178E7 from 8, complete sequence Length = 204856 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atctgaagaagctctggtag 113 |||||||||||||||||||| Sbjct: 42202 atctgaagaagctctggtag 42183
>emb|AL844556.4| Mouse DNA sequence from clone RP23-21N12 on chromosome 2, complete sequence Length = 178656 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 cccacacacacactcttccacctc 31 ||||||||||||| |||||||||| Sbjct: 87967 cccacacacacacacttccacctc 87944
>emb|AL714021.12| Mouse DNA sequence from clone RP23-305F20 on chromosome X, complete sequence Length = 182607 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tccacctctcactccctctc 43 |||||||||||||||||||| Sbjct: 34692 tccacctctcactccctctc 34711 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,761,108 Number of Sequences: 3902068 Number of extensions: 13761108 Number of successful extensions: 135644 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 103 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134177 Number of HSP's gapped (non-prelim): 1465 length of query: 521 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 498 effective length of database: 17,143,297,704 effective search space: 8537362256592 effective search space used: 8537362256592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
