>5NG4_PINTA (Q6J163) Auxin-induced protein 5NG4|
          Length = 410

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 1/148 (0%)
 Frame = +3

Query: 81  AAMVVVQCIYAAMALWAKAMFSRGMSPMVFVVYRQAIATLVLVPITLLANRKRLREIVCI 260
           AAM+ +Q  YA   + ++A  + G+S +VF VYR  +A +++ P      +K    +   
Sbjct: 21  AAMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEKKERPAL--- 77

Query: 261 GTTGFAL-VFLASLVGATADQYMYYQGMYLGSSSMATAMTNLIPAITFVLATSVGLESVE 437
            T  F +  FL +L G T    +    + L   + A+A+ N +PAITF++A ++ LE V 
Sbjct: 78  -TLSFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALRLEKVH 136

Query: 438 IRKPRSMAKVFGTAVCVGGAMVMAFFKG 521
           I +   +AK+ GT  CV GA ++  +KG
Sbjct: 137 ISRRDGLAKIIGTVACVSGATIITLYKG 164

>YYAM_BACSU (P37511) Hypothetical transport protein yyaM|
          Length = 305

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
 Frame = +3

Query: 141 FSRGMSPMVFVVYRQAIATLVLVPITLLANRKRLREIVCIGTTGFALVFLASLVGATADQ 320
           F +  +P+    Y   I  + L+ ++L  ++      + IG  G A+ F+A         
Sbjct: 176 FVKDGTPLSTTTYTMVIGAVSLIVVSLFTSKPVSLSNIPIGVWG-AIAFMAFFTSVLG-- 232

Query: 321 YMYY-QGMYLGSSSMATAMTNLIPAITFVLATSVGLESVEIRKPRSMAKVFGTAVCVGGA 497
           Y+++ QG+    +S  +   NL+P +T +++ +VG        P  + +V G  + + G 
Sbjct: 233 YLWWNQGIKEIGASKTSLFFNLVPVVTMIISFAVG-------TPIKVFQVIGAVLVILGV 285

Query: 498 M 500
           +
Sbjct: 286 L 286

>KLH14_CHICK (Q5F3N5) Kelch-like protein 14|
          Length = 622

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 333 GSTCTDPPSPRQERPRTPARSPSFRCKQSPSAFS 232
           G+   +PP P QE P TP+ SP  +   SP A +
Sbjct: 84  GAPPKEPPPPPQEEPGTPSSSPEDKLLASPRAIN 117

>LRFN4_HUMAN (Q6PJG9) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 4 precursor
          Length = 635

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
 Frame = +2

Query: 191 RHPCPRPHHLACQQEKAEGDCL-----------HRNDGLRAGVLGLSCRGDGGSVHVLPR 337
           R P PRP   +C  +  +  C             R+  +  G+LG  CRG GGS   L  
Sbjct: 574 RSPPPRPQR-SCSLDLGDAGCYGYARRLGGAWARRSHSVHGGLLGAGCRGVGGSAERLEE 632

Query: 338 HV 343
            V
Sbjct: 633 SV 634

>Y266_ARCFU (O29973) Hypothetical transport protein AF0266|
          Length = 276

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 26/121 (21%), Positives = 52/121 (42%)
 Frame = +3

Query: 147 RGMSPMVFVVYRQAIATLVLVPITLLANRKRLREIVCIGTTGFALVFLASLVGATADQYM 326
           R +SP+     R AIA  +   I +L  R + +++          VF   + G +     
Sbjct: 26  RFLSPIAIASLRFAIANTLFAVIIILGKRIKWKDL--------PKVFALGIFGVSVYHVF 77

Query: 327 YYQGMYLGSSSMATAMTNLIPAITFVLATSVGLESVEIRKPRSMAKVFGTAVCVGGAMVM 506
              G    SS +A+ + +L P    +L+      ++ +R+  + +KV G  +   G +V+
Sbjct: 78  LNLGEVYISSGVASVVISLAPIFVLILS------AIFLRERITYSKVVGIIIAFLGVVVI 131

Query: 507 A 509
           +
Sbjct: 132 S 132

>GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -1

Query: 413 RRQHEGDRRYKVRHGRRHGR*SQVHALVVHVLIRRRPDKRGQEHQR 276
           RR+ E +RR K R  RRH   S++ A VV     +R D++G E +R
Sbjct: 453 RRRAEDERREKERDRRRHREMSKLLATVVS---GQRQDRQGGERRR 495

>GLNA_EMENI (Q96V52) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase) (GS)
          Length = 345

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = +2

Query: 269 GLRAGVLGLSCRGDGGSVHVLP-------RHVPGIIVHGDGHDEPYTGDH 397
           GL   V   S R +GG   +         RHV  I V+G+G++E  TG H
Sbjct: 236 GLHTNVSTTSTRAEGGIKAIESYMKKLEARHVEHIAVYGEGNEERLTGRH 285

>NCA2_YEAST (Q12374) Nuclear control of ATPase protein 2|
          Length = 616

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 153 MSPMVFVVYRQAIATLVLVPI-TLLANRKRLREIVCIGTTGFALVFLASLVGATADQYMY 329
           +SP + ++Y   +A    V +  + +N KR RE + I       V   S  GA AD+   
Sbjct: 495 LSPALVILYSSIVALKRFVKLGNVWSNEKRYREQISISLNNVERVLNYSKQGADADEEHL 554

Query: 330 YQGM 341
            QG+
Sbjct: 555 NQGL 558

>KDSB_RICCN (Q92I96) 3-deoxy-manno-octulosonate cytidylyltransferase (EC|
           2.7.7.38) (CMP-KDO synthetase)
           (CMP-2-keto-3-deoxyoctulosonic acid synthetase) (CKS)
          Length = 246

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 252 VCIGTTGFALVFLASLVGATADQYMYYQGMY 344
           V + + G AL F  SL+   A++++Y+ GMY
Sbjct: 147 VAVDSAGTALYFSRSLIPNGAEEFLYHVGMY 177

>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 26.6 bits (57), Expect(2) = 8.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 146  PRHEPHGLRRLQAGHRHPCPRPHH 217
            PR  PH   R +A HR P   PHH
Sbjct: 1217 PRPHPH---RPRASHRAPAAAPHH 1237



 Score = 20.8 bits (42), Expect(2) = 8.0
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +1

Query: 91   WWCSASTRPWRSGPRP 138
            WW      PW +GP P
Sbjct: 1194 WWAPPPP-PWAAGPPP 1208

>TGIF_PANTR (Q5IS58) 5'-TG-3'-interacting factor (Homeobox protein TGIF)|
          Length = 401

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 348 PGTCLGSTCTDPPSPRQERPRTPARSPSFRCKQSPSAFSCWQ 223
           P   LGS+C  PP P +  P+  A SP    K  P     W+
Sbjct: 71  PSALLGSSCAPPPPPAR-CPQPRALSPELGTKAGPRRPHRWE 111

>Y2353_MYCBO (P63400) Hypothetical ABC transporter ATP-binding protein Mb2353c|
          Length = 697

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 30/112 (26%), Positives = 39/112 (34%), Gaps = 4/112 (3%)
 Frame = +3

Query: 3   CNRPPTRLASRDLPGVAMAMQGHKPLAAMVVVQCIYAAMALWAKAMFSRGMSPMVFVVYR 182
           C   P R+      G   A     PL    + Q    A      A+ S      V V + 
Sbjct: 6   CGPEPGRIGEVTPLGPCPAQHRGGPLRPSELAQASVMAALCAVTAIIS------VVVPFA 59

Query: 183 QAIATLVLVPITLLANRKRLREI----VCIGTTGFALVFLASLVGATADQYM 326
             +A L  VP  LLA R RLR +    V  G   F +  L   +G     Y+
Sbjct: 60  AGLALLGTVPTGLLAYRYRLRVLAAATVAAGMIAFLIAGLGGFMGVVHSAYI 111

>Y2326_MYCTU (P63399) Hypothetical ABC transporter ATP-binding protein|
           Rv2326c/MT2388
          Length = 697

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 30/112 (26%), Positives = 39/112 (34%), Gaps = 4/112 (3%)
 Frame = +3

Query: 3   CNRPPTRLASRDLPGVAMAMQGHKPLAAMVVVQCIYAAMALWAKAMFSRGMSPMVFVVYR 182
           C   P R+      G   A     PL    + Q    A      A+ S      V V + 
Sbjct: 6   CGPEPGRIGEVTPLGPCPAQHRGGPLRPSELAQASVMAALCAVTAIIS------VVVPFA 59

Query: 183 QAIATLVLVPITLLANRKRLREI----VCIGTTGFALVFLASLVGATADQYM 326
             +A L  VP  LLA R RLR +    V  G   F +  L   +G     Y+
Sbjct: 60  AGLALLGTVPTGLLAYRYRLRVLAAATVAAGMIAFLIAGLGGFMGVVHSAYI 111

>LRFN4_MOUSE (Q80XU8) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 4 precursor
          Length = 636

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
 Frame = +2

Query: 191 RHPCPRPHHLACQQEKAEGDCL-----------HRNDGLRAGVLGLSCRGDGGSVHVLPR 337
           R P PRP           G C             R+  +  G+LG  CRG GGS   L  
Sbjct: 574 RSPPPRPQRSCSLDLGDTGGCYGYARRLGGAWARRSHSVHGGLLGAGCRGVGGSAERLEE 633

Query: 338 HV 343
            V
Sbjct: 634 SV 635

>ATKB_RHILO (Q98GX6) Potassium-transporting ATPase B chain (EC 3.6.3.12)|
           (Potassium-translocating ATPase B chain) (ATP
           phosphohydrolase [potassium-transporting] B chain)
           (Potassium-binding and translocating subunit B)
          Length = 697

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = +3

Query: 270 GFALVFLASLVGATADQYMYYQGMYLGSSSMATAMTNLIPAITFVLATSVGLESVEIRKP 449
           G  L+F+  L  AT   +  Y G Y+  + +      LIP     L +++G+  ++    
Sbjct: 226 GMTLIFV--LATATIPSFASYSGGYISVTVLVALFVTLIPTTIGALLSAIGIAGMDRLVR 283

Query: 450 RSMAKVFGTAVCVGG 494
            ++  + G AV   G
Sbjct: 284 FNVLAMSGRAVEAAG 298

>MMPLA_STRCO (Q53902) Putative membrane protein actII-3|
          Length = 711

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 36/142 (25%), Positives = 56/142 (39%)
 Frame = +3

Query: 78  LAAMVVVQCIYAAMALWAKAMFSRGMSPMVFVVYRQAIATLVLVPITLLANRKRLREIVC 257
           L  + ++   Y +  LW   M S GMS    +V  QAI  L+     L  N +    I+ 
Sbjct: 185 LIVVTILVVTYRSPLLWLLPMISAGMS----LVISQAIVYLLAKNAGLTVNAQTAM-ILT 239

Query: 258 IGTTGFALVFLASLVGATADQYMYYQGMYLGSSSMATAMTNLIPAITFVLATSVGLESVE 437
           +   G A  +   LV    ++   ++  +    +MA A+    PAI    AT      V 
Sbjct: 240 VLVLGAATDYALLLVARYREELRRHEDRH---EAMAVALRRAGPAIVASAATVAVSMLVL 296

Query: 438 IRKPRSMAKVFGTAVCVGGAMV 503
           +    +  K  G  VC  G +V
Sbjct: 297 LLAALNSTKGLG-PVCAVGVLV 317

>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56)
          Length = 1006

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 357 TMIPGTCLGSTCTDPPSPRQERPRTPARSPSFRCKQSP 244
           T  PG   G T    P P  + PR+P+RSPS    +SP
Sbjct: 326 TFRPGAPSGQTV---PPPLPKPPRSPSRSPSHSPNRSP 360


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,838,633
Number of Sequences: 219361
Number of extensions: 1292878
Number of successful extensions: 5383
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5358
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)