Clone Information

BLAST Search Result

Clone Name	bart35f06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	IUNH_LEIMA (P83851) Inosine-uridine preferring nucleoside hydrol...	99	6e-21
2	IUNH_CRIFA (Q27546) Inosine-uridine preferring nucleoside hydrol...	97	3e-20
3	RIHC_SHISS (Q3Z5Y0) Nonspecific ribonucleoside hydrolase rihC (E...	93	6e-19
4	RIHC_SALTY (Q8ZRY7) Nonspecific ribonucleoside hydrolase rihC (E...	92	1e-18
5	RIHC_SALTI (Q8Z9M9) Nonspecific ribonucleoside hydrolase rihC (E...	92	1e-18
6	RIHC_SALCH (Q57TL0) Nonspecific ribonucleoside hydrolase rihC (E...	92	1e-18
7	RIHC_SALPA (Q5PKI2) Nonspecific ribonucleoside hydrolase rihC (E...	92	1e-18
8	RIHC_ECOLI (P22564) Nonspecific ribonucleoside hydrolase rihC (E...	92	1e-18
9	RIHC_ECO57 (Q8XA41) Nonspecific ribonucleoside hydrolase rihC (E...	92	1e-18
10	RIHC_SHIFL (Q83MH0) Nonspecific ribonucleoside hydrolase rihC (E...	91	2e-18
11	RIHC_ECOL6 (P0C0W2) Nonspecific ribonucleoside hydrolase rihC (E...	91	3e-18
12	RIHA_PHOPR (Q6LQG2) Pyrimidine-specific ribonucleoside hydrolase...	89	1e-17
13	RIHA_ECOL6 (Q8FJY8) Pyrimidine-specific ribonucleoside hydrolase...	87	3e-17
14	RIHA_SHISS (Q3Z4E1) Pyrimidine-specific ribonucleoside hydrolase...	87	4e-17
15	RIHA_SHIFL (Q83LY1) Pyrimidine-specific ribonucleoside hydrolase...	87	4e-17
16	RIHA_ECOLI (P41409) Pyrimidine-specific ribonucleoside hydrolase...	87	4e-17
17	RIHA_ECO57 (Q8XBL8) Pyrimidine-specific ribonucleoside hydrolase...	87	4e-17
18	RIHA_SALTY (Q8ZQY4) Pyrimidine-specific ribonucleoside hydrolase...	86	7e-17
19	RIHA_SALTI (Q8Z8H0) Pyrimidine-specific ribonucleoside hydrolase...	86	7e-17
20	RIHA_SALPA (Q5PM78) Pyrimidine-specific ribonucleoside hydrolase...	86	7e-17
21	RIHA_SALCH (Q57RR6) Pyrimidine-specific ribonucleoside hydrolase...	86	7e-17
22	RIHA_SHEON (Q8EIM7) Pyrimidine-specific ribonucleoside hydrolase...	81	2e-15
23	RIHB_ECOL6 (Q8FFT8) Pyrimidine-specific ribonucleoside hydrolase...	80	3e-15
24	RIHB_SHISS (Q3Z044) Pyrimidine-specific ribonucleoside hydrolase...	80	4e-15
25	RIHB_ECOLI (P33022) Pyrimidine-specific ribonucleoside hydrolase...	80	4e-15
26	RIHB_ECO57 (Q8XE94) Pyrimidine-specific ribonucleoside hydrolase...	80	4e-15
27	RIHB_SHIFL (Q83KF1) Pyrimidine-specific ribonucleoside hydrolase...	79	9e-15
28	YD62_SCHPO (Q10314) Hypothetical protein C17G8.02 in chromosome I	75	2e-13
29	YBP2_ACIAM (P32986) Hypothetical protein in bps2 5'region (ORF2)...	66	8e-11
30	URH1_YEAST (Q04179) Uridine nucleosidase (EC 3.2.2.3) (Uridine r...	60	4e-09
31	YRI3_CORAM (Q45825) Hypothetical protein in ribF 3'region (Fragm...	55	1e-07
32	RIHB_SHIDS (Q32ER0) Putative pyrimidine-specific ribonucleoside ...	44	2e-04
33	RIHB_SHIBS (Q31YW9) Putative pyrimidine-specific ribonucleoside ...	41	0.002
34	RL9_STAES (Q8CU90) 50S ribosomal protein L9	33	0.56
35	RL9_STAEQ (Q5HK14) 50S ribosomal protein L9	33	0.56
36	MUTL_CHLTE (Q8KAX3) DNA mismatch repair protein mutL	31	2.8
37	AP2A1_HUMAN (O95782) AP-2 complex subunit alpha-1 (Adapter-relat...	30	3.6
38	STCD_RHIME (O87278) Probable N-methylproline demethylase (EC 1.-...	30	6.1
39	GPMA_BARQU (Q6FZ12) 2,3-bisphosphoglycerate-dependent phosphogly...	30	6.1
40	DYHC_RAT (P38650) Dynein heavy chain, cytosolic (DYHC) (Cytoplas...	29	8.0
41	DYHC_MOUSE (Q9JHU4) Dynein heavy chain, cytosolic (DYHC) (Cytopl...	29	8.0
42	DYHC_HUMAN (Q14204) Dynein heavy chain, cytosolic (DYHC) (Cytopl...	29	8.0
43	DYHC_DROME (P37276) Dynein heavy chain, cytosolic (DYHC)	29	8.0
44	ARS2_DROME (Q9V9K7) Arsenite-resistance protein 2 homolog	29	8.0
45	NUAM_SOLTU (Q43644) NADH-ubiquinone oxidoreductase 75 kDa subuni...	29	8.0

>IUNH_LEIMA (P83851) Inosine-uridine preferring nucleoside hydrolase (EC|
           3.2.2.1) (IU-nucleoside hydrolase) (IU-NH) (Purine
           nucleosidase) (Nonspecific nucleoside hydrolase)
          Length = 313

 Score = 99.4 bits (246), Expect = 6e-21
 Identities = 55/140 (39%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
 Frame = +3

Query: 141 KKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIP 320
           +K+I+D DPGIDDA+AIF A  +PE+E++ +TT+ GN      T+NA  + + AG   +P
Sbjct: 2   RKIILDCDPGIDDAVAIFLAHGNPEIELLAITTVVGNQSLEKVTQNARLVADVAGIVGVP 61

Query: 321 VAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANL--YPGQ 494
           VA G    + +   +R AS +HG  G+GN ++PP     +D   A  L+    +   P  
Sbjct: 62  VAAGCTKPLVRG--VRNASHIHGETGMGNVSYPPEFKTKLDGRHAVQLIIDLIMSHEPKT 119

Query: 495 VTVVALGPLTNLALAVELDP 554
           +T+V  G LTN+A+AV L+P
Sbjct: 120 ITLVPTGGLTNIAMAVRLEP 139

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>IUNH_CRIFA (Q27546) Inosine-uridine preferring nucleoside hydrolase (EC|
           3.2.2.1) (IU-nucleoside hydrolase) (IU-NH) (Purine
           nucleosidase) (Nonspecific nucleoside hydrolase)
          Length = 314

 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 53/140 (37%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
 Frame = +3

Query: 141 KKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIP 320
           KK+I+D DPG+DDA+AI  A  +PE+E++ +TT+ GN   A  TRNA  + + AG T +P
Sbjct: 2   KKIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGVP 61

Query: 321 VAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANL--YPGQ 494
           +A G    + +  K+  A  +HG  G+G   +P      VD+  A  L+    +   P  
Sbjct: 62  IAAGCDKPLVR--KIMTAGHIHGESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKT 119

Query: 495 VTVVALGPLTNLALAVELDP 554
           +T+V  G LTN+A+A  L+P
Sbjct: 120 ITLVPTGGLTNIAMAARLEP 139

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>RIHC_SHISS (Q3Z5Y0) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)|
           (Purine/pyrimidine ribonucleoside hydrolase)
          Length = 304

 Score = 92.8 bits (229), Expect = 6e-19
 Identities = 56/136 (41%), Positives = 81/136 (59%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           + +DTDPGIDDA+AI AA+ +PEL++  +TT+ GNV     TRNAL LL      +IP+A
Sbjct: 5   IFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQLLH-FWNAEIPLA 63

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
           +G+ V + +A   R A+ VHG  G+   +F     K +   A   + +     P  VT+V
Sbjct: 64  QGAAVPLVRAP--RDAASVHGESGMAGYDFVEHNRKPIGIPAFLAIRDALMRAPEPVTLV 121

Query: 507 ALGPLTNLALAVELDP 554
           A+GPLTN+AL +   P
Sbjct: 122 AIGPLTNIALLLSQCP 137

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>RIHC_SALTY (Q8ZRY7) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)|
           (Purine/pyrimidine ribonucleoside hydrolase)
          Length = 306

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 55/136 (40%), Positives = 83/136 (61%)
 Frame = +3

Query: 129 VTKKKKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGR 308
           +T    +I+DTDPGIDDA AI AAL +P+L++  +TT+ GNV     TRNAL LL     
Sbjct: 1   MTASLHIILDTDPGIDDAAAIAAALFAPQLDLQLITTVAGNVSVEKTTRNALQLLH-FWN 59

Query: 309 TDIPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYP 488
           +DIP+A+G+   + +   LR A++VHG  G+   +F     + + + A   + +     P
Sbjct: 60  SDIPLAQGAATPLLR--PLRDAAYVHGESGMEGYDFVDHQRQPLAKPAFIAIRDVLMNAP 117

Query: 489 GQVTVVALGPLTNLAL 536
             +T+VA+GPLTN+AL
Sbjct: 118 EPMTLVAIGPLTNIAL 133

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>RIHC_SALTI (Q8Z9M9) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)|
           (Purine/pyrimidine ribonucleoside hydrolase)
          Length = 306

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 55/136 (40%), Positives = 83/136 (61%)
 Frame = +3

Query: 129 VTKKKKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGR 308
           +T    +I+DTDPGIDDA AI AAL +P+L++  +TT+ GNV     TRNAL LL     
Sbjct: 1   MTASLHIILDTDPGIDDAAAIAAALFAPQLDLQLITTVAGNVSVEKTTRNALQLLH-FWN 59

Query: 309 TDIPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYP 488
           +DIP+A+G+   + +   LR A++VHG  G+   +F     + + + A   + +     P
Sbjct: 60  SDIPLAQGAATPLLR--PLRDAAYVHGESGMEGYDFVDHQRQPLAKPAFIAIRDVLMNAP 117

Query: 489 GQVTVVALGPLTNLAL 536
             +T+VA+GPLTN+AL
Sbjct: 118 EPMTLVAIGPLTNIAL 133

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>RIHC_SALCH (Q57TL0) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)|
           (Purine/pyrimidine ribonucleoside hydrolase)
          Length = 306

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 55/136 (40%), Positives = 83/136 (61%)
 Frame = +3

Query: 129 VTKKKKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGR 308
           +T    +I+DTDPGIDDA AI AAL +P+L++  +TT+ GNV     TRNAL LL     
Sbjct: 1   MTASLHIILDTDPGIDDAAAIAAALFAPQLDLQLITTVAGNVSVEKTTRNALQLLH-FWN 59

Query: 309 TDIPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYP 488
           +DIP+A+G+   + +   LR A++VHG  G+   +F     + + + A   + +     P
Sbjct: 60  SDIPLAQGAATPLLR--PLRDAAYVHGESGMEGYDFVDHQRQPLAKPAFIAIRDVLMNAP 117

Query: 489 GQVTVVALGPLTNLAL 536
             +T+VA+GPLTN+AL
Sbjct: 118 EPMTLVAIGPLTNIAL 133

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>RIHC_SALPA (Q5PKI2) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)|
           (Purine/pyrimidine ribonucleoside hydrolase)
          Length = 304

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 55/136 (40%), Positives = 83/136 (61%)
 Frame = +3

Query: 129 VTKKKKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGR 308
           +T    +I+DTDPGIDDA AI AAL +P+L++  +TT+ GNV     TRNAL LL     
Sbjct: 1   MTASLHIILDTDPGIDDAAAIAAALFAPQLDLQLITTVAGNVSVEKTTRNALQLLH-FWN 59

Query: 309 TDIPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYP 488
           +DIP+A+G+   + +   LR A++VHG  G+   +F     + + + A   + +     P
Sbjct: 60  SDIPLAQGAATPLLR--PLRDAAYVHGESGMEGYDFVDHQRQPLAKPAFISIRDVLMNAP 117

Query: 489 GQVTVVALGPLTNLAL 536
             +T+VA+GPLTN+AL
Sbjct: 118 EPMTLVAIGPLTNIAL 133

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>RIHC_ECOLI (P22564) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)|
           (Purine/pyrimidine ribonucleoside hydrolase)
          Length = 304

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 56/136 (41%), Positives = 81/136 (59%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           + +DTDPGIDDA+AI AA+ +PEL++  +TT+ GNV     TRNAL LL      +IP+A
Sbjct: 5   IFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQLLH-FWNAEIPLA 63

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
           +G+ V + +A   R A+ VHG  G+   +F     K +   A   + +     P  VT+V
Sbjct: 64  QGAAVPLVRAP--RDAASVHGESGMAGYDFVEHNRKPLGIPAFLAIRDALMRAPEPVTLV 121

Query: 507 ALGPLTNLALAVELDP 554
           A+GPLTN+AL +   P
Sbjct: 122 AIGPLTNIALLLSQCP 137

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>RIHC_ECO57 (Q8XA41) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)|
           (Purine/pyrimidine ribonucleoside hydrolase)
          Length = 304

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 56/136 (41%), Positives = 81/136 (59%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           + +DTDPGIDDA+AI AA+ +PEL++  +TT+ GNV     TRNAL LL      +IP+A
Sbjct: 5   IFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQLLH-FWNAEIPLA 63

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
           +G+ V + +A   R A+ VHG  G+   +F     K +   A   + +     P  VT+V
Sbjct: 64  QGAAVPLVRAP--RDAASVHGESGMAGYDFVEHNRKPLGIPAFLAIRDALMRAPEPVTLV 121

Query: 507 ALGPLTNLALAVELDP 554
           A+GPLTN+AL +   P
Sbjct: 122 AIGPLTNIALLLSQCP 137

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>RIHC_SHIFL (Q83MH0) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)|
           (Purine/pyrimidine ribonucleoside hydrolase)
          Length = 304

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 55/130 (42%), Positives = 79/130 (60%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           + +DTDPGIDDA+AI AA+ +PEL++  +TT+ GNV     TRNAL LL      +IP+A
Sbjct: 5   IFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQLLH-FWNAEIPLA 63

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
           +G+ V + +A   R A+ VHG  G+   +F     K +   A   + +     P  VT+V
Sbjct: 64  QGAAVPLVRAP--RDAASVHGESGMAGYDFVEHNRKPLGIPAFLAIRDALMRAPEPVTLV 121

Query: 507 ALGPLTNLAL 536
           A+GPLTN+AL
Sbjct: 122 AIGPLTNIAL 131

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>RIHC_ECOL6 (P0C0W2) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)|
           (Purine/pyrimidine ribonucleoside hydrolase)
          Length = 304

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 55/136 (40%), Positives = 81/136 (59%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           + +DTDPGIDDA+AI AA+ +PEL++  +TT+ GNV     TRNAL LL      +IP+A
Sbjct: 5   IFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQLLH-FWNAEIPLA 63

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
           +G+ V + +A   R A+ VHG  G+   +F     + +   A   + +     P  VT+V
Sbjct: 64  QGAAVPLVRAP--RDAASVHGESGMAGYDFVEHNRQPLGIPAFLAIRDALMRAPEPVTLV 121

Query: 507 ALGPLTNLALAVELDP 554
           A+GPLTN+AL +   P
Sbjct: 122 AIGPLTNIALLLSQCP 137

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>RIHA_PHOPR (Q6LQG2) Pyrimidine-specific ribonucleoside hydrolase rihA (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 310

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 54/132 (40%), Positives = 71/132 (53%)
 Frame = +3

Query: 141 KKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIP 320
           + +IID DPG DDA+A+  A  SPEL++  +TT  GN        NAL +L   GRTDIP
Sbjct: 3   RPIIIDCDPGHDDAIALILACASPELDIKAVTTSAGNQTPEKTLHNALRILTLVGRTDIP 62

Query: 321 VAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVT 500
           VA G+   + +  +L IA  VHG  GL     P PA +     A   + +        VT
Sbjct: 63  VAGGALQPLSR--ELIIADNVHGETGLDGPVLPEPAFEPQPCHAVELMAKILTEATEPVT 120

Query: 501 VVALGPLTNLAL 536
           +V  GPLTN+AL
Sbjct: 121 LVPTGPLTNIAL 132

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>RIHA_ECOL6 (Q8FJY8) Pyrimidine-specific ribonucleoside hydrolase rihA (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 311

 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 52/136 (38%), Positives = 71/136 (52%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           +++D DPG DDA+AI  AL SPEL+V  +T+  GN       RN L +L    RTDIPVA
Sbjct: 5   ILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVA 64

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
            G+   + +   L IA  VHG  GL     P P     + +A   + +        VT+V
Sbjct: 65  SGAVKPLMR--NLIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESEEPVTIV 122

Query: 507 ALGPLTNLALAVELDP 554
           + GP TN+AL +   P
Sbjct: 123 STGPQTNVALLLNSHP 138

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>RIHA_SHISS (Q3Z4E1) Pyrimidine-specific ribonucleoside hydrolase rihA (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 311

 Score = 86.7 bits (213), Expect = 4e-17
 Identities = 52/136 (38%), Positives = 72/136 (52%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           +++D DPG DDA+AI  AL SPEL+V  +T+  GN       RN L +L    RTDIPVA
Sbjct: 5   ILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVA 64

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
            G+   + +  +L IA  VHG  GL     P P     + +A   + +        VT+V
Sbjct: 65  GGAVKPLMR--ELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIV 122

Query: 507 ALGPLTNLALAVELDP 554
           + GP TN+AL +   P
Sbjct: 123 STGPQTNVALLLNSHP 138

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>RIHA_SHIFL (Q83LY1) Pyrimidine-specific ribonucleoside hydrolase rihA (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 311

 Score = 86.7 bits (213), Expect = 4e-17
 Identities = 52/136 (38%), Positives = 72/136 (52%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           +++D DPG DDA+AI  AL SPEL+V  +T+  GN       RN L +L    RTDIPVA
Sbjct: 5   ILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVA 64

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
            G+   + +  +L IA  VHG  GL     P P     + +A   + +        VT+V
Sbjct: 65  GGAVKPLMR--ELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIV 122

Query: 507 ALGPLTNLALAVELDP 554
           + GP TN+AL +   P
Sbjct: 123 STGPQTNVALLLNSHP 138

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>RIHA_ECOLI (P41409) Pyrimidine-specific ribonucleoside hydrolase rihA (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 311

 Score = 86.7 bits (213), Expect = 4e-17
 Identities = 52/136 (38%), Positives = 72/136 (52%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           +++D DPG DDA+AI  AL SPEL+V  +T+  GN       RN L +L    RTDIPVA
Sbjct: 5   ILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVA 64

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
            G+   + +  +L IA  VHG  GL     P P     + +A   + +        VT+V
Sbjct: 65  GGAVKPLMR--ELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIV 122

Query: 507 ALGPLTNLALAVELDP 554
           + GP TN+AL +   P
Sbjct: 123 STGPQTNVALLLNSHP 138

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>RIHA_ECO57 (Q8XBL8) Pyrimidine-specific ribonucleoside hydrolase rihA (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 311

 Score = 86.7 bits (213), Expect = 4e-17
 Identities = 52/136 (38%), Positives = 72/136 (52%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           +++D DPG DDA+AI  AL SPEL+V  +T+  GN       RN L +L    RTDIPVA
Sbjct: 5   ILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVA 64

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
            G+   + +  +L IA  VHG  GL     P P     + +A   + +        VT+V
Sbjct: 65  GGAVKPLMR--ELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIV 122

Query: 507 ALGPLTNLALAVELDP 554
           + GP TN+AL +   P
Sbjct: 123 STGPQTNVALLLNSHP 138

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>RIHA_SALTY (Q8ZQY4) Pyrimidine-specific ribonucleoside hydrolase rihA (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 311

 Score = 85.9 bits (211), Expect = 7e-17
 Identities = 53/136 (38%), Positives = 71/136 (52%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           +IID DPG DDA+A+  AL SPELEV  +T+  GN       RN L +L    R DIPVA
Sbjct: 5   IIIDCDPGHDDAIALVLALASPELEVKAITSSAGNQTPEKTLRNVLRMLTLLKRLDIPVA 64

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
            G+   + +  +L IA  VHG  GL     P P+      +A   + +        VT+V
Sbjct: 65  GGAVKPLMR--ELIIADNVHGESGLDGPALPEPSFAPQSGTAVELMAKTLRESAQPVTIV 122

Query: 507 ALGPLTNLALAVELDP 554
           + GP TN+AL +   P
Sbjct: 123 STGPQTNVALLLNSHP 138

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>RIHA_SALTI (Q8Z8H0) Pyrimidine-specific ribonucleoside hydrolase rihA (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 311

 Score = 85.9 bits (211), Expect = 7e-17
 Identities = 53/136 (38%), Positives = 71/136 (52%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           +IID DPG DDA+A+  AL SPELEV  +T+  GN       RN L +L    R DIPVA
Sbjct: 5   IIIDCDPGHDDAIALVLALASPELEVKAITSSAGNQTPEKTLRNVLRMLTLLKRPDIPVA 64

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
            G+   + +  +L IA  VHG  GL     P P+      +A   + +        VT+V
Sbjct: 65  GGAVKPLMR--ELIIADNVHGESGLDGPALPEPSFAPQSGTAVELMAKTLRESAQPVTIV 122

Query: 507 ALGPLTNLALAVELDP 554
           + GP TN+AL +   P
Sbjct: 123 STGPQTNVALLLNSHP 138

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>RIHA_SALPA (Q5PM78) Pyrimidine-specific ribonucleoside hydrolase rihA (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 311

 Score = 85.9 bits (211), Expect = 7e-17
 Identities = 53/136 (38%), Positives = 71/136 (52%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           +IID DPG DDA+A+  AL SPELEV  +T+  GN       RN L +L    R DIPVA
Sbjct: 5   IIIDCDPGHDDAIALVLALASPELEVKAITSSAGNQTPEKTLRNVLRMLTLLKRPDIPVA 64

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
            G+   + +  +L IA  VHG  GL     P P+      +A   + +        VT+V
Sbjct: 65  GGAVKPLMR--ELIIADNVHGESGLDGPALPEPSFAPQSGTAVELMAKTLRESSQPVTIV 122

Query: 507 ALGPLTNLALAVELDP 554
           + GP TN+AL +   P
Sbjct: 123 STGPQTNVALLLNSHP 138

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>RIHA_SALCH (Q57RR6) Pyrimidine-specific ribonucleoside hydrolase rihA (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 311

 Score = 85.9 bits (211), Expect = 7e-17
 Identities = 53/136 (38%), Positives = 71/136 (52%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           +IID DPG DDA+A+  AL SPELEV  +T+  GN       RN L +L    R DIPVA
Sbjct: 5   IIIDCDPGHDDAIALVLALASPELEVKAITSSAGNQTPEKTLRNVLRMLTLLKRPDIPVA 64

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
            G+   + +  +L IA  VHG  GL     P P+      +A   + +        VT+V
Sbjct: 65  GGAVKPLMR--ELIIADNVHGESGLDGPALPEPSFAPQSGTAVELMAKTLRESAQPVTIV 122

Query: 507 ALGPLTNLALAVELDP 554
           + GP TN+AL +   P
Sbjct: 123 STGPQTNVALLLNSHP 138

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>RIHA_SHEON (Q8EIM7) Pyrimidine-specific ribonucleoside hydrolase rihA (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 318

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 50/130 (38%), Positives = 68/130 (52%)
 Frame = +3

Query: 147 VIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVA 326
           +I+D DPG DDA+A+  AL  P+L  + +TT  GN        NAL +L    R+DIPVA
Sbjct: 5   IILDCDPGHDDAIALILALAHPDLVPLAVTTSAGNQTPDKTLNNALRILTLLNRSDIPVA 64

Query: 327 EGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVV 506
            G+   +  A  L IA  VHG  GL     P P+      +A   + +Q       VT++
Sbjct: 65  GGAAKPL--ARDLIIADNVHGETGLDGPALPNPSFSPQAITAVELMAQQIRKSHQPVTLI 122

Query: 507 ALGPLTNLAL 536
             GPLTN+AL
Sbjct: 123 PTGPLTNIAL 132

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>RIHB_ECOL6 (Q8FFT8) Pyrimidine-specific ribonucleoside hydrolase rihB (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 313

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 43/141 (30%), Positives = 79/141 (56%)
 Frame = +3

Query: 135 KKKKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTD 314
           +K+K+I+D DPG DDA+AI  A + P ++++G+T + GN        N L++ +     +
Sbjct: 2   EKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKL-EIN 60

Query: 315 IPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQ 494
           +PV  G    I +  +  +A  +HG  GL    F P   +A +  A  ++++      G 
Sbjct: 61  VPVYAGMPQPIMR--QQIVADNIHGETGLDGPVFEPLTRQAENTHAVKYIIDTLMASDGD 118

Query: 495 VTVVALGPLTNLALAVELDPS 557
           +T+V +GPL+N+A+A+ + P+
Sbjct: 119 ITLVPVGPLSNIAVAMRMQPA 139

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>RIHB_SHISS (Q3Z044) Pyrimidine-specific ribonucleoside hydrolase rihB (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 313

 Score = 80.1 bits (196), Expect = 4e-15
 Identities = 43/141 (30%), Positives = 78/141 (55%)
 Frame = +3

Query: 135 KKKKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTD 314
           +K+K+I+D DPG DDA+AI  A + P ++++G+T + GN        N L++ +     +
Sbjct: 2   EKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKL-EIN 60

Query: 315 IPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQ 494
           +PV  G    I +  +  +A  +HG  GL    F P   +A    A  ++++      G 
Sbjct: 61  VPVYAGMPQPIMR--QQIVADNIHGETGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGD 118

Query: 495 VTVVALGPLTNLALAVELDPS 557
           +T+V +GPL+N+A+A+ + P+
Sbjct: 119 ITLVPVGPLSNIAVAMRMQPA 139

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>RIHB_ECOLI (P33022) Pyrimidine-specific ribonucleoside hydrolase rihB (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 313

 Score = 80.1 bits (196), Expect = 4e-15
 Identities = 43/141 (30%), Positives = 78/141 (55%)
 Frame = +3

Query: 135 KKKKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTD 314
           +K+K+I+D DPG DDA+AI  A + P ++++G+T + GN        N L++ +     +
Sbjct: 2   EKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKL-EIN 60

Query: 315 IPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQ 494
           +PV  G    I +  +  +A  +HG  GL    F P   +A    A  ++++      G 
Sbjct: 61  VPVYAGMPQPIMR--QQIVADNIHGETGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGD 118

Query: 495 VTVVALGPLTNLALAVELDPS 557
           +T+V +GPL+N+A+A+ + P+
Sbjct: 119 ITLVPVGPLSNIAVAMRMQPA 139

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>RIHB_ECO57 (Q8XE94) Pyrimidine-specific ribonucleoside hydrolase rihB (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 313

 Score = 80.1 bits (196), Expect = 4e-15
 Identities = 43/141 (30%), Positives = 78/141 (55%)
 Frame = +3

Query: 135 KKKKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTD 314
           +K+K+I+D DPG DDA+AI  A + P ++++G+T + GN        N L++ +     +
Sbjct: 2   EKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKL-EIN 60

Query: 315 IPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQ 494
           +PV  G    I +  +  +A  +HG  GL    F P   +A    A  ++++      G 
Sbjct: 61  VPVYAGMPQPIMR--QQIVADNIHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGD 118

Query: 495 VTVVALGPLTNLALAVELDPS 557
           +T+V +GPL+N+A+A+ + P+
Sbjct: 119 ITLVPVGPLSNIAVAMRMQPA 139

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>RIHB_SHIFL (Q83KF1) Pyrimidine-specific ribonucleoside hydrolase rihB (EC|
           3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 313

 Score = 79.0 bits (193), Expect = 9e-15
 Identities = 42/141 (29%), Positives = 78/141 (55%)
 Frame = +3

Query: 135 KKKKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTD 314
           +K+K+I+D +PG DDA+A+  A + P ++++G+T + GN        N L++ +     +
Sbjct: 2   EKRKIILDCEPGHDDAIAMMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKL-EIN 60

Query: 315 IPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQ 494
           +PV  G    I +  K  +A  +HG  GL    F P   +A    A  ++++      G 
Sbjct: 61  VPVYAGMPQPIMR--KQIVADNIHGETGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGD 118

Query: 495 VTVVALGPLTNLALAVELDPS 557
           +T+V +GPL+N+A+A+ + P+
Sbjct: 119 ITLVPVGPLSNIAVAMRMQPA 139

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>YD62_SCHPO (Q10314) Hypothetical protein C17G8.02 in chromosome I|
          Length = 330

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 2/151 (1%)
 Frame = +3

Query: 111 SMSMAAVTKKKKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHL 290
           S    +  +   + ID DPG DD +A+  A  +   +++G++T+ GN      T+NAL +
Sbjct: 7   SFQKGSALENYNIWIDCDPGHDDVVALTLAACAGHCKILGVSTVHGNTTLEFTTKNALAV 66

Query: 291 LETAGRTDIPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPP--PAGKAVDQSAAAFL 464
           +E   + D+ V  G+   + + +    A+ +HG++GL   +  P  P  KA   +  A  
Sbjct: 67  MELLNQ-DVDVHAGAAKPLMRES--AFATHIHGTNGLAGISLLPDYPKKKATPDAVFAMY 123

Query: 465 VEQANLYPGQVTVVALGPLTNLALAVELDPS 557
              +N YP  VT+VA GPLTN+AL +   PS
Sbjct: 124 TTISN-YPEPVTLVATGPLTNIALLLATYPS 153

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>YBP2_ACIAM (P32986) Hypothetical protein in bps2 5'region (ORF2) (Fragment)|
          Length = 171

 Score = 65.9 bits (159), Expect = 8e-11
 Identities = 46/136 (33%), Positives = 70/136 (51%)
 Frame = +3

Query: 150 IIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPVAE 329
           IID+D   DD +AI  A  S   +++G+T + GNV      +NAL  +E     D+PV  
Sbjct: 6   IIDSDTASDDTIAILLA--SKFFKLLGITIVAGNVKFENEIKNALFTVEYFN-LDVPVFI 62

Query: 330 GSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVVA 509
           GS   I    K      VHG++G+G+     P      + A   ++  +  Y G++ ++A
Sbjct: 63  GSSRPIMG--KWSTVEEVHGNNGIGDWKIEEPKISPEKEHAIDAIIRLSKEYEGELEILA 120

Query: 510 LGPLTNLALAVELDPS 557
           + PLTNLALA   DP+
Sbjct: 121 VSPLTNLALAYLKDPT 136

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>URH1_YEAST (Q04179) Uridine nucleosidase (EC 3.2.2.3) (Uridine ribohydrolase)|
          Length = 378

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
 Frame = +3

Query: 138 KKKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTD- 314
           K  + +D DPG DDA+AI      P   ++G++T FGN        NA  LL   G+   
Sbjct: 43  KIPIWLDCDPGHDDAIAILLGCFHPAFNLLGISTCFGNAPPENTDYNARSLLTAMGKAQA 102

Query: 315 IPVAEGSHVTIKKATKLRIASFVHGSDGL-GNQNFPPPAGKAVDQSAAAFLVEQANL-YP 488
           IPV +G+    K+  +   A  +HG  GL G    P P  +A         +E+A L   
Sbjct: 103 IPVYKGAQRPWKR--EPHYAPDIHGISGLDGTSLLPKPTFEARTDKTYIEAIEEAILANN 160

Query: 489 GQVTVVALGPLTNLALAVELDP 554
           G+++ V+ G LT LA      P
Sbjct: 161 GEISFVSTGALTTLATVFRCKP 182

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>YRI3_CORAM (Q45825) Hypothetical protein in ribF 3'region (Fragment)|
          Length = 92

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 29/87 (33%), Positives = 49/87 (56%)
 Frame = +3

Query: 144 KVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTDIPV 323
           K+I+D D GIDDA A+  A+  P ++++G+T  +GNV       N   LL   G  D+PV
Sbjct: 2   KMILDLDTGIDDAFALAYAIAHPGIDLIGVTGTYGNVTIEQGMANTQALLTLLGAADVPV 61

Query: 324 AEGSHVTIKKATKLRIASFVHGSDGLG 404
             G  +   + ++   ++ +HG +G+G
Sbjct: 62  YAGRAIDGFEVSE--ASARIHGRNGVG 86

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>RIHB_SHIDS (Q32ER0) Putative pyrimidine-specific ribonucleoside hydrolase rihB|
           (EC 3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 271

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 35/63 (55%)
 Frame = +3

Query: 369 IASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVVALGPLTNLALAVEL 548
           +A  +HG  GL    F P   +A    A  ++++      G +T+V +GPL+N+A+A+ +
Sbjct: 35  VADNIHGETGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRM 94

Query: 549 DPS 557
            P+
Sbjct: 95  QPA 97

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>RIHB_SHIBS (Q31YW9) Putative pyrimidine-specific ribonucleoside hydrolase rihB|
           (EC 3.2.-.-) (Cytidine/uridine-specific hydrolase)
          Length = 242

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = +3

Query: 369 IASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVVALGPLTNLALAVEL 548
           +A  +HG  GL    F     +A    A  ++++      G +T+V +GPL+N+A+A+ +
Sbjct: 6   VADNIHGETGLDGPVFESLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRM 65

Query: 549 DPS 557
            P+
Sbjct: 66  QPA 68

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>RL9_STAES (Q8CU90) 50S ribosomal protein L9|
          Length = 148

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 29/113 (25%), Positives = 46/113 (40%)
 Frame = +3

Query: 135 KKKKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTD 314
           + K+   D    IDDA A+   L+  E+EV   T   G ++ +++T+     L+   + D
Sbjct: 50  QNKRAEADRQQEIDDAKALKEQLKDIEVEVSAKTGEGGKLFGSISTKQIAEALKK--QHD 107

Query: 315 IPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQ 473
           I + +            R     HG   LG  N P    K V+ +     VEQ
Sbjct: 108 IKIDK------------RKMDLPHGIHALGYTNVPVKLDKEVEGTIRVHTVEQ 148

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>RL9_STAEQ (Q5HK14) 50S ribosomal protein L9|
          Length = 148

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 29/113 (25%), Positives = 46/113 (40%)
 Frame = +3

Query: 135 KKKKVIIDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATRNALHLLETAGRTD 314
           + K+   D    IDDA A+   L+  E+EV   T   G ++ +++T+     L+   + D
Sbjct: 50  QNKRAEADRQQEIDDAKALKEQLKDIEVEVSAKTGEGGKLFGSISTKQIAEALKK--QHD 107

Query: 315 IPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPAGKAVDQSAAAFLVEQ 473
           I + +            R     HG   LG  N P    K V+ +     VEQ
Sbjct: 108 IKIDK------------RKMDLPHGIHALGYTNVPVKLDKEVEGTIRVHTVEQ 148

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>MUTL_CHLTE (Q8KAX3) DNA mismatch repair protein mutL|
          Length = 624

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 478 FACSTRKAAADWSTALPAGGGKFWLPRPS--EPWTKLAIRSL 359
           F   TRKA     T L + GG    P+P+  EP T +A+R+L
Sbjct: 109 FELKTRKAGNSLGTLLRSDGGVIETPQPAQCEPGTSIAVRNL 150

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>AP2A1_HUMAN (O95782) AP-2 complex subunit alpha-1 (Adapter-related protein|
           complex 2 alpha-1 subunit) (Alpha-adaptin A) (Adaptor
           protein complex AP-2 alpha-1 subunit) (Clathrin assembly
           protein complex 2 alpha-A large chain) (100 kDa coated
           vesicle prote
          Length = 977

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +3

Query: 390 SDGLGNQNFPPPAGKAVDQSAAAFLVEQANLYPGQVTVVALGPLTNLALAVELDPSFP 563
           +D LG +  PPPA       A   LV+   ++ G     +LGP    A   EL+P  P
Sbjct: 658 ADLLGLRAAPPPAAPPASAGAGNLLVD---VFDGPAAQPSLGPTPEEAFLSELEPPAP 712

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>STCD_RHIME (O87278) Probable N-methylproline demethylase (EC 1.-.-.-)|
           (Stachydrine utilization protein stcD)
          Length = 678

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +3

Query: 153 IDTDPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTALATR-----NALHLLETAGRTDI 317
           IDTDPG+ D + I     SP L+  G      N  T  A +      A H +  +G+ D+
Sbjct: 259 IDTDPGLTDVIPIQGMANSPHLDFAGEIRAATNFPTFHAAKIPDVATARHAI-ASGKVDM 317

Query: 318 PVAEGSHVT 344
                +H+T
Sbjct: 318 VGMTRAHMT 326

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>GPMA_BARQU (Q6FZ12) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase|
           (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM)
           (BPG-dependent PGAM) (dPGM)
          Length = 206

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 162 DPGIDDAMAIFAALRSPELEVVGLTTIFGNVYTAL---ATRNALHLLETAGRTDIPVAEG 332
           DPG+ +     A      L+  GL   F   YT+    A + A H+LE  G++D+P+ + 
Sbjct: 26  DPGLTEKGHAEAITAGKNLKAAGLK--FDIAYTSALQRAQKTAQHILEQMGQSDLPLIKN 83

Query: 333 S 335
           S
Sbjct: 84  S 84

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>DYHC_RAT (P38650) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein|
            heavy chain 1) (DHC1) (Dynein heavy chain 1, cytoplasmic
            1) (MAP 1C)
          Length = 4644

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 129  VTKKKKVIIDTDPGIDDAMAIFAALRS-PELEVVGL 233
            + + K +++   PG    M +F+ALR+ P++EVVGL
Sbjct: 2583 LAEHKPLVLCGPPGSGKTMTLFSALRALPDMEVVGL 2618

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>DYHC_MOUSE (Q9JHU4) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein|
            heavy chain 1) (DHC1) (Dynein heavy chain 1, cytoplasmic
            1)
          Length = 4644

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 129  VTKKKKVIIDTDPGIDDAMAIFAALRS-PELEVVGL 233
            + + K +++   PG    M +F+ALR+ P++EVVGL
Sbjct: 2583 LAEHKPLVLCGPPGSGKTMTLFSALRALPDMEVVGL 2618

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>DYHC_HUMAN (Q14204) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein|
            heavy chain 1) (DHC1) (Dynein heavy chain 1, cytoplasmic
            1)
          Length = 4646

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 129  VTKKKKVIIDTDPGIDDAMAIFAALRS-PELEVVGL 233
            + + K +++   PG    M +F+ALR+ P++EVVGL
Sbjct: 2585 LAEHKPLVLCGPPGSGKTMTLFSALRALPDMEVVGL 2620

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>DYHC_DROME (P37276) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4639

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 129  VTKKKKVIIDTDPGIDDAMAIFAALRS-PELEVVGL 233
            + + K +++   PG    M +F+ALR+ P++EVVGL
Sbjct: 2570 LAEHKPLVLCGPPGSGKTMTLFSALRALPDMEVVGL 2605

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>ARS2_DROME (Q9V9K7) Arsenite-resistance protein 2 homolog|
          Length = 943

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
 Frame = +2

Query: 296 DRWEDRHPRRGGVPCNNQESHQATDCQ------LRPRFGWPRQPELPSAGRQ----GGGP 445
           D W +R+P RGG       +    D         RPR+G P + +LP A R     G G 
Sbjct: 42  DEWAERNPFRGGASAGGGGARHRPDYSDYRGPGARPRYGSPVR-DLPPAKRMRPDWGDGD 100

Query: 446 VR 451
           VR
Sbjct: 101 VR 102

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>NUAM_SOLTU (Q43644) NADH-ubiquinone oxidoreductase 75 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-75KD) (CI-75KD) (76 kDa mitochondrial complex
           I subunit)
          Length = 738

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -1

Query: 565 LGKEGSSSTASARLVRGPRATTVTCPG*RFACSTRKAAA-----DWSTALPAGGGKFWLP 401
           LG   S +  S+R++R    T V+ P  + A +   AAA     D     P GG +  LP
Sbjct: 3   LGLLASRALRSSRIIRNSTRTIVSTPELKNADAAAAAAAADAPSDLPKRHPVGGARVHLP 62

Query: 400 RPSE 389
            P +
Sbjct: 63  NPED 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,179,537
Number of Sequences: 219361
Number of extensions: 1299032
Number of successful extensions: 5172
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 4875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5136
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result