No.
Definition
Score (bits)
E Value
1 gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome...
155
2e-34
2 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
155
2e-34
3 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
155
2e-34
4 gb|AY107519.1| Zea mays PCO078033 mRNA sequence
147
4e-32
5 gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1...
145
2e-31
6 dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon...
145
2e-31
7 dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon...
145
2e-31
8 gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome...
131
3e-27
9 gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome...
131
3e-27
10 dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clon...
129
1e-26
11 gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome...
119
1e-23
12 dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon...
101
2e-18
13 gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete...
92
2e-15
14 ref|NM_191262.1| Oryza sativa (japonica cultivar-group), predic...
46
0.12
15 ref|NM_140251.2| Drosophila melanogaster CG10907-RA (CG10907), mRNA
46
0.12
16 gb|AC105263.2| Drosophila melanogaster 3L BAC RP98-48G3 (Roswell...
46
0.12
17 gb|AY070988.1| Drosophila melanogaster RE08109 full length cDNA
46
0.12
18 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
46
0.12
19 dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic D...
46
0.12
20 dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic D...
46
0.12
21 gb|AE003543.4| Drosophila melanogaster chromosome 3L, section 42...
46
0.12
22 ref|XM_661737.1| Cryptosporidium hominis TU502 hypothetical prot...
44
0.48
23 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
44
0.48
24 dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
44
0.48
25 dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic D...
44
0.48
26 dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic D...
44
0.48
27 gb|AY365053.1| Ralstonia eutropha JMP134 plasmid pJP4, complete ...
42
1.9
28 gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
42
1.9
29 gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp...
42
1.9
30 gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com...
42
1.9
31 gb|CP000093.1| Ralstonia eutropha JMP134 plasmid 1, complete seq...
42
1.9
32 emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos...
42
1.9
33 emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete ...
42
1.9
34 gb|CP000133.1| Rhizobium etli CFN 42, complete genome
42
1.9
35 emb|CR524242.1| Gallus gallus finished cDNA, clone ChEST1013p17
42
1.9
36 gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare str...
42
1.9
37 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
42
1.9
38 gb|AF326688.1|AF326688 Burkholderia pseudomallei RNA polymerase ...
42
1.9
39 dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic D...
42
1.9
40 gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com...
42
1.9
41 gb|AC149052.3| Mus musculus BAC clone RP24-548O1 from 7, complet...
42
1.9
42 gb|AC149282.2| Mus musculus BAC clone RP23-236D19 from 7, comple...
42
1.9
43 ref|XM_480279.1| Oryza sativa (japonica cultivar-group), mRNA
40
7.5
44 ref|XM_475739.1| Oryza sativa (japonica cultivar-group), predic...
40
7.5
45 gb|AC166150.2| Mus musculus chromosome 1, clone RP23-321N22, com...
40
7.5
46 gb|AC114651.11| Mus musculus chromosome 1, clone RP24-153E5, com...
40
7.5
47 gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ...
40
7.5
48 gb|AC005538.3| Homo sapiens BAC clone RP11-332L11 from 2, comple...
40
7.5
49 gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome...
40
7.5
50 gb|AC161346.7| Mus musculus chromosome 1, clone RP24-335G4, comp...
40
7.5
51 gb|AC111015.2| Oryza sativa (japonica cultivar-group) chromosome...
40
7.5
52 gb|AC122521.4| Mus musculus BAC clone RP24-476C7 from chromosome...
40
7.5
53 emb|Z93241.11|HS222E13 Human DNA sequence from clone RP1-222E13 ...
40
7.5
54 gb|AY341030.1| Homo sapiens diaphorase (NADH) (cytochrome b-5 re...
40
7.5
55 gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
40
7.5
56 gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
40
7.5
57 gb|AE006470.1| Chlorobium tepidum TLS, complete genome
40
7.5
58 dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...
40
7.5
59 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
40
7.5
60 gb|AC159031.1| Pan troglodytes BAC clone CH251-381B17 from chrom...
40
7.5
61 gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
40
7.5
62 dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
40
7.5
63 dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ...
40
7.5
64 dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g...
40
7.5
65 dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
40
7.5
66 dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic D...
40
7.5
67 dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic D...
40
7.5
68 emb|AJ328107.1|HSA328107 Homo sapiens genomic sequence surroundi...
40
7.5
69 emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl...
40
7.5
70 gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence
40
7.5
71 gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...
40
7.5
72 gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
40
7.5
73 gb|AF028835.1|AF028835 Drosophila pallidosa vermilion (v) gene, ...
40
7.5
74 gb|AC004707.1|AC004707 Homo sapiens chromosome 17, clone hRPC.11...
40
7.5
>gb|AC138195.2 | Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0005P21, complete sequence
Length = 147381
Score = 155 bits (78), Expect = 2e-34
Identities = 171/202 (84%)
Strand = Plus / Plus
Query: 39 gagcaatggcggctcaggcacagaccatagaggttcccacagacgctgagctgctgcagg 98
|||||||||| |||||| | |||||||| ||||||| | || || |||||| |||| |
Sbjct: 63190 gagcaatggcagctcagactcagaccatccaggttcctaacgatgccgagctgatgcaag 63249
Query: 99 cacaggcagacctgtggcgccacagcctctactacctctcctccatggccctccggtgcg 158
||||||| |||||||||||||||||||||||||||||| | ||||||| |||||| ||||
Sbjct: 63250 cacaggccgacctgtggcgccacagcctctactacctcacgtccatgggcctccgctgcg 63309
Query: 159 ccgtcgagctcgagatcccgactgccatccaccgcctcggcggggcggcctcgctgcccg 218
|||||||||||| |||||||| | ||||| |||||||||| || ||| | | || |
Sbjct: 63310 ccgtcgagctcggcatcccgaccacgatccatggcctcggcggcgccgccaccgtccctg 63369
Query: 219 acctgatggccgcgctgtccct 240
||||||||||||||||||||||
Sbjct: 63370 acctgatggccgcgctgtccct 63391
Score = 145 bits (73), Expect = 2e-31
Identities = 139/161 (86%)
Strand = Plus / Plus
Query: 41 gcaatggcggctcaggcacagaccatagaggttcccacagacgctgagctgctgcaggca 100
|||||||||| |||||| | || |||||||||||||| ||||||||||||||||| ||
Sbjct: 118888 gcaatggcggatcaggctaacacaatagaggttcccactgacgctgagctgctgcaagcg 118947
Query: 101 caggcagacctgtggcgccacagcctctactacctctcctccatggccctccggtgcgcc 160
||||| || ||||||||||||||||||||||||||| |||||| || ||||| ||||||
Sbjct: 118948 caggccgatctgtggcgccacagcctctactacctcacctccacgggactccgctgcgcc 119007
Query: 161 gtcgagctcgagatcccgactgccatccaccgcctcggcgg 201
|| |||| | ||||| || ||||||||||||||||||||
Sbjct: 119008 atcaagctgggcatccccaccgccatccaccgcctcggcgg 119048
Score = 129 bits (65), Expect = 1e-26
Identities = 113/129 (87%)
Strand = Plus / Minus
Query: 73 tcccacagacgctgagctgctgcaggcacaggcagacctgtggcgccacagcctctacta 132
|||||| |||| ||| || || ||||| ||||| |||||||||||||||||||||||||
Sbjct: 131519 tcccactgacgatgaactcctacaggcgcaggccaacctgtggcgccacagcctctacta 131460
Query: 133 cctctcctccatggccctccggtgcgccgtcgagctcgagatcccgactgccatccaccg 192
|||| |||||||||| ||||||||||||||| |||||| ||||| || | |||||||||
Sbjct: 131459 cctcacctccatggcgctccggtgcgccgtcaagctcggcatccccacagtcatccaccg 131400
Query: 193 cctcggcgg 201
|||||||||
Sbjct: 131399 cctcggcgg 131391
Score = 58.0 bits (29), Expect = 3e-05
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 340 ccgcctcacaccgttgtcccgcatcctggtgcacggtgtcgtagcggatgagcatcatag 399
||||||||| ||| |||||||||||||||| |||| ||||| || || ||||| |||||
Sbjct: 63488 ccgcctcactccgctgtcccgcatcctggttgacggcgtcgtcgccgacgagcaccatag 63547
Query: 400 ccaga 404
|||||
Sbjct: 63548 ccaga 63552
Score = 50.1 bits (25), Expect = 0.008
Identities = 136/173 (78%)
Strand = Plus / Plus
Query: 342 gcctcacaccgttgtcccgcatcctggtgcacggtgtcgtagcggatgagcatcatagcc 401
||||||| ||| ||||||||||||| || | || ||||| || || ||||| || ||||
Sbjct: 119189 gcctcaccccgctgtcccgcatcctcgtcgatggcgtcgtcgccgacgagcaccacagcc 119248
Query: 402 agaagtattttgtgctcggcgtgacctcgccgcattacacggaggcggcgatggggctgg 461
||| || || ||||||| || ||| |||| ||| ||| ||||||||| |||||||||
Sbjct: 119249 agacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcgctggggctgg 119308
Query: 462 ccggctggttcaggaaagaccatgagccgccggtgccgtcgccattcgaggac 514
|| ||||||||||| ||| | ||||||| | ||||| || |||||||||
Sbjct: 119309 acgagtggttcaggaaggacgtggcgccgccgctcccgtccccgttcgaggac 119361
Score = 44.1 bits (22), Expect = 0.48
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 489 cgccggtgccgtcgccattcgaggac 514
|||||||||||||||| |||||||||
Sbjct: 63637 cgccggtgccgtcgccgttcgaggac 63662
>dbj|AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 155 bits (78), Expect = 2e-34
Identities = 171/202 (84%)
Strand = Plus / Minus
Query: 39 gagcaatggcggctcaggcacagaccatagaggttcccacagacgctgagctgctgcagg 98
|||||||||| |||||| | |||||||| ||||||| | || || |||||| |||| |
Sbjct: 11550598 gagcaatggcagctcagactcagaccatccaggttcctaacgatgccgagctgatgcaag 11550539
Query: 99 cacaggcagacctgtggcgccacagcctctactacctctcctccatggccctccggtgcg 158
||||||| |||||||||||||||||||||||||||||| | ||||||| |||||| ||||
Sbjct: 11550538 cacaggccgacctgtggcgccacagcctctactacctcacgtccatgggcctccgctgcg 11550479
Query: 159 ccgtcgagctcgagatcccgactgccatccaccgcctcggcggggcggcctcgctgcccg 218
|||||||||||| |||||||| | ||||| |||||||||| || ||| | | || |
Sbjct: 11550478 ccgtcgagctcggcatcccgaccacgatccatggcctcggcggcgccgccaccgtccctg 11550419
Query: 219 acctgatggccgcgctgtccct 240
||||||||||||||||||||||
Sbjct: 11550418 acctgatggccgcgctgtccct 11550397
Score = 145 bits (73), Expect = 2e-31
Identities = 139/161 (86%)
Strand = Plus / Minus
Query: 41 gcaatggcggctcaggcacagaccatagaggttcccacagacgctgagctgctgcaggca 100
|||||||||| |||||| | || |||||||||||||| ||||||||||||||||| ||
Sbjct: 11494900 gcaatggcggatcaggctaacacaatagaggttcccactgacgctgagctgctgcaagcg 11494841
Query: 101 caggcagacctgtggcgccacagcctctactacctctcctccatggccctccggtgcgcc 160
||||| || ||||||||||||||||||||||||||| |||||| || ||||| ||||||
Sbjct: 11494840 caggccgatctgtggcgccacagcctctactacctcacctccacgggactccgctgcgcc 11494781
Query: 161 gtcgagctcgagatcccgactgccatccaccgcctcggcgg 201
|| |||| | ||||| || ||||||||||||||||||||
Sbjct: 11494780 atcaagctgggcatccccaccgccatccaccgcctcggcgg 11494740
Score = 131 bits (66), Expect = 3e-27
Identities = 138/162 (85%)
Strand = Plus / Minus
Query: 40 agcaatggcggctcaggcacagaccatagaggttcccacagacgctgagctgctgcaggc 99
||||||||||| ||| || | || ||| |||||||||| ||||||||||||||||| ||
Sbjct: 7139047 agcaatggcgggtcaagctaacacaatacaggttcccaccgacgctgagctgctgcaagc 7138988
Query: 100 acaggcagacctgtggcgccacagcctctactacctctcctccatggccctccggtgcgc 159
|||||| ||||| |||||||||||| ||| ||||||| | ||||||| ||||| |||||
Sbjct: 7138987 acaggccgacctatggcgccacagcttctcctacctcacggccatggcgctccgctgcgc 7138928
Query: 160 cgtcgagctcgagatcccgactgccatccaccgcctcggcgg 201
|| | |||||| ||||| || ||||||||||||||||||||
Sbjct: 7138927 cgccaagctcggcatccccaccgccatccaccgcctcggcgg 7138886
Score = 129 bits (65), Expect = 1e-26
Identities = 113/129 (87%)
Strand = Plus / Plus
Query: 73 tcccacagacgctgagctgctgcaggcacaggcagacctgtggcgccacagcctctacta 132
|||||| |||| ||| || || ||||| ||||| |||||||||||||||||||||||||
Sbjct: 11482269 tcccactgacgatgaactcctacaggcgcaggccaacctgtggcgccacagcctctacta 11482328
Query: 133 cctctcctccatggccctccggtgcgccgtcgagctcgagatcccgactgccatccaccg 192
|||| |||||||||| ||||||||||||||| |||||| ||||| || | |||||||||
Sbjct: 11482329 cctcacctccatggcgctccggtgcgccgtcaagctcggcatccccacagtcatccaccg 11482388
Query: 193 cctcggcgg 201
|||||||||
Sbjct: 11482389 cctcggcgg 11482397
Score = 119 bits (60), Expect = 1e-23
Identities = 120/140 (85%)
Strand = Plus / Minus
Query: 101 caggcagacctgtggcgccacagcctctactacctctcctccatggccctccggtgcgcc 160
||||| || ||||||||||||| ||||| ||||||| |||||||| | ||||||||||||
Sbjct: 11303032 caggccgagctgtggcgccacaccctctcctacctcacctccatgactctccggtgcgcc 11302973
Query: 161 gtcgagctcgagatcccgactgccatccaccgcctcggcggggcggcctcgctgcccgac 220
||| | |||| ||||| || ||||||||||||| |||||| || |||||||||||||||
Sbjct: 11302972 gtccacctcggcatccccaccgccatccaccgccacggcggcgccgcctcgctgcccgac 11302913
Query: 221 ctgatggccgcgctgtccct 240
|| | |||||||||||||
Sbjct: 11302912 ctcgtcaccgcgctgtccct 11302893
Score = 101 bits (51), Expect = 2e-18
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 86 gagctgctgcaggcacaggcagacctgtggcgccacagcctctactacctctcctccatg 145
||||||||||| || ||||| ||||||||||||||||||||||||| | || | ||||||
Sbjct: 11331655 gagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccatg 11331596
Query: 146 gccctccggtgcgccgtcgagctcgagatcccgactgccatccaccgcctcggcggggcg 205
|| ||| |||||||||| |||||| ||||| || |||||||||||| || || |
Sbjct: 11331595 gcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgcgctggtggcacc 11331536
Query: 206 gcctcgctgcccgacctgatggccgcgctgtccct 240
||||||||||||||||| | ||||| ||||||||
Sbjct: 11331535 gcctcgctgcccgaccttgtcgccgccctgtccct 11331501
Score = 89.7 bits (45), Expect = 9e-15
Identities = 114/137 (83%)
Strand = Plus / Minus
Query: 86 gagctgctgcaggcacaggcagacctgtggcgccacagcctctactacctctcctccatg 145
||||||||||| || ||||| ||| ||| ||||||||||||||||| | || | ||||||
Sbjct: 11355303 gagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccatg 11355244
Query: 146 gccctccggtgcgccgtcgagctcgagatcccgactgccatccaccgcctcggcggggcg 205
|| | | |||||||||| |||||| ||||| || |||||||||||| |||||| |
Sbjct: 11355243 gcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgccggcggcacc 11355184
Query: 206 gcctcgctgcccgacct 222
|||||||||||||||||
Sbjct: 11355183 gcctcgctgcccgacct 11355167
Score = 58.0 bits (29), Expect = 3e-05
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 340 ccgcctcacaccgttgtcccgcatcctggtgcacggtgtcgtagcggatgagcatcatag 399
||||||||| ||| |||||||||||||||| |||| ||||| || || ||||| |||||
Sbjct: 11550300 ccgcctcactccgctgtcccgcatcctggttgacggcgtcgtcgccgacgagcaccatag 11550241
Query: 400 ccaga 404
|||||
Sbjct: 11550240 ccaga 11550236
Score = 56.0 bits (28), Expect = 1e-04
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 86 gagctgctgcaggcacaggcagacctgtggcgccacagcctctactac 133
||||||||||| |||||||| || || |||||||||||||||| ||||
Sbjct: 11439601 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctac 11439554
Score = 50.1 bits (25), Expect = 0.008
Identities = 136/173 (78%)
Strand = Plus / Minus
Query: 342 gcctcacaccgttgtcccgcatcctggtgcacggtgtcgtagcggatgagcatcatagcc 401
||||||| ||| ||||||||||||| || | || ||||| || || ||||| || ||||
Sbjct: 11494599 gcctcaccccgctgtcccgcatcctcgtcgatggcgtcgtcgccgacgagcaccacagcc 11494540
Query: 402 agaagtattttgtgctcggcgtgacctcgccgcattacacggaggcggcgatggggctgg 461
||| || || ||||||| || ||| |||| ||| ||| ||||||||| |||||||||
Sbjct: 11494539 agacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcgctggggctgg 11494480
Query: 462 ccggctggttcaggaaagaccatgagccgccggtgccgtcgccattcgaggac 514
|| ||||||||||| ||| | ||||||| | ||||| || |||||||||
Sbjct: 11494479 acgagtggttcaggaaggacgtggcgccgccgctcccgtccccgttcgaggac 11494427
Score = 48.1 bits (24), Expect = 0.031
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 173 atcccgactgccatccaccgcctcggcggggcggcctcgctgcccgacctgatggccgcg 232
||||| || |||||||||||| |||||| || || ||||||||||||||| | ||||
Sbjct: 11439514 atccccaccgccatccaccgcgccggcggcgccgcgtcgctgcccgacctggttaccgct 11439455
Query: 233 ctgtccct 240
||||||||
Sbjct: 11439454 ctgtccct 11439447
Score = 44.1 bits (22), Expect = 0.48
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 cgccggtgccgtcgccattcgaggac 514
|||||||||||||||| |||||||||
Sbjct: 11550151 cgccggtgccgtcgccgttcgaggac 11550126
Score = 44.1 bits (22), Expect = 0.48
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 337 ctaccgcctcacaccgttgtcccgcatcct 366
|||||||||||| ||| |||||||||||||
Sbjct: 7138747 ctaccgcctcaccccgctgtcccgcatcct 7138718
Score = 44.1 bits (22), Expect = 0.48
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 cgccggtgccgtcgccattcgaggac 514
|||||||||||||||| |||||||||
Sbjct: 7138574 cgccggtgccgtcgccgttcgaggac 7138549
Score = 42.1 bits (21), Expect = 1.9
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 442 ggaggcggcgatggggctggccggctggttcaggaaagacc 482
|||||||||||||||||| || | ||||||| |||| ||||
Sbjct: 11354929 ggaggcggcgatggggctcgcggactggttcgggaaggacc 11354889
>gb|DP000010.1 | Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 155 bits (78), Expect = 2e-34
Identities = 171/202 (84%)
Strand = Plus / Minus
Query: 39 gagcaatggcggctcaggcacagaccatagaggttcccacagacgctgagctgctgcagg 98
|||||||||| |||||| | |||||||| ||||||| | || || |||||| |||| |
Sbjct: 11629787 gagcaatggcagctcagactcagaccatccaggttcctaacgatgccgagctgatgcaag 11629728
Query: 99 cacaggcagacctgtggcgccacagcctctactacctctcctccatggccctccggtgcg 158
||||||| |||||||||||||||||||||||||||||| | ||||||| |||||| ||||
Sbjct: 11629727 cacaggccgacctgtggcgccacagcctctactacctcacgtccatgggcctccgctgcg 11629668
Query: 159 ccgtcgagctcgagatcccgactgccatccaccgcctcggcggggcggcctcgctgcccg 218
|||||||||||| |||||||| | ||||| |||||||||| || ||| | | || |
Sbjct: 11629667 ccgtcgagctcggcatcccgaccacgatccatggcctcggcggcgccgccaccgtccctg 11629608
Query: 219 acctgatggccgcgctgtccct 240
||||||||||||||||||||||
Sbjct: 11629607 acctgatggccgcgctgtccct 11629586
Score = 145 bits (73), Expect = 2e-31
Identities = 139/161 (86%)
Strand = Plus / Minus
Query: 41 gcaatggcggctcaggcacagaccatagaggttcccacagacgctgagctgctgcaggca 100
|||||||||| |||||| | || |||||||||||||| ||||||||||||||||| ||
Sbjct: 11574089 gcaatggcggatcaggctaacacaatagaggttcccactgacgctgagctgctgcaagcg 11574030
Query: 101 caggcagacctgtggcgccacagcctctactacctctcctccatggccctccggtgcgcc 160
||||| || ||||||||||||||||||||||||||| |||||| || ||||| ||||||
Sbjct: 11574029 caggccgatctgtggcgccacagcctctactacctcacctccacgggactccgctgcgcc 11573970
Query: 161 gtcgagctcgagatcccgactgccatccaccgcctcggcgg 201
|| |||| | ||||| || ||||||||||||||||||||
Sbjct: 11573969 atcaagctgggcatccccaccgccatccaccgcctcggcgg 11573929
Score = 131 bits (66), Expect = 3e-27
Identities = 138/162 (85%)
Strand = Plus / Minus
Query: 40 agcaatggcggctcaggcacagaccatagaggttcccacagacgctgagctgctgcaggc 99
||||||||||| ||| || | || ||| |||||||||| ||||||||||||||||| ||
Sbjct: 7205018 agcaatggcgggtcaagctaacacaatacaggttcccaccgacgctgagctgctgcaagc 7204959
Query: 100 acaggcagacctgtggcgccacagcctctactacctctcctccatggccctccggtgcgc 159
|||||| ||||| |||||||||||| ||| ||||||| | ||||||| ||||| |||||
Sbjct: 7204958 acaggccgacctatggcgccacagcttctcctacctcacggccatggcgctccgctgcgc 7204899
Query: 160 cgtcgagctcgagatcccgactgccatccaccgcctcggcgg 201
|| | |||||| ||||| || ||||||||||||||||||||
Sbjct: 7204898 cgccaagctcggcatccccaccgccatccaccgcctcggcgg 7204857
Score = 129 bits (65), Expect = 1e-26
Identities = 113/129 (87%)
Strand = Plus / Plus
Query: 73 tcccacagacgctgagctgctgcaggcacaggcagacctgtggcgccacagcctctacta 132
|||||| |||| ||| || || ||||| ||||| |||||||||||||||||||||||||
Sbjct: 11561458 tcccactgacgatgaactcctacaggcgcaggccaacctgtggcgccacagcctctacta 11561517
Query: 133 cctctcctccatggccctccggtgcgccgtcgagctcgagatcccgactgccatccaccg 192
|||| |||||||||| ||||||||||||||| |||||| ||||| || | |||||||||
Sbjct: 11561518 cctcacctccatggcgctccggtgcgccgtcaagctcggcatccccacagtcatccaccg 11561577
Query: 193 cctcggcgg 201
|||||||||
Sbjct: 11561578 cctcggcgg 11561586
Score = 119 bits (60), Expect = 1e-23
Identities = 120/140 (85%)
Strand = Plus / Minus
Query: 101 caggcagacctgtggcgccacagcctctactacctctcctccatggccctccggtgcgcc 160
||||| || ||||||||||||| ||||| ||||||| |||||||| | ||||||||||||
Sbjct: 11382221 caggccgagctgtggcgccacaccctctcctacctcacctccatgactctccggtgcgcc 11382162
Query: 161 gtcgagctcgagatcccgactgccatccaccgcctcggcggggcggcctcgctgcccgac 220
||| | |||| ||||| || ||||||||||||| |||||| || |||||||||||||||
Sbjct: 11382161 gtccacctcggcatccccaccgccatccaccgccacggcggcgccgcctcgctgcccgac 11382102
Query: 221 ctgatggccgcgctgtccct 240
|| | |||||||||||||
Sbjct: 11382101 ctcgtcaccgcgctgtccct 11382082
Score = 101 bits (51), Expect = 2e-18
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 86 gagctgctgcaggcacaggcagacctgtggcgccacagcctctactacctctcctccatg 145
||||||||||| || ||||| ||||||||||||||||||||||||| | || | ||||||
Sbjct: 11410844 gagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccatg 11410785
Query: 146 gccctccggtgcgccgtcgagctcgagatcccgactgccatccaccgcctcggcggggcg 205
|| ||| |||||||||| |||||| ||||| || |||||||||||| || || |
Sbjct: 11410784 gcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgcgctggtggcacc 11410725
Query: 206 gcctcgctgcccgacctgatggccgcgctgtccct 240
||||||||||||||||| | ||||| ||||||||
Sbjct: 11410724 gcctcgctgcccgaccttgtcgccgccctgtccct 11410690
Score = 89.7 bits (45), Expect = 9e-15
Identities = 114/137 (83%)
Strand = Plus / Minus
Query: 86 gagctgctgcaggcacaggcagacctgtggcgccacagcctctactacctctcctccatg 145
||||||||||| || ||||| ||| ||| ||||||||||||||||| | || | ||||||
Sbjct: 11434492 gagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccatg 11434433
Query: 146 gccctccggtgcgccgtcgagctcgagatcccgactgccatccaccgcctcggcggggcg 205
|| | | |||||||||| |||||| ||||| || |||||||||||| |||||| |
Sbjct: 11434432 gcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgccggcggcacc 11434373
Query: 206 gcctcgctgcccgacct 222
|||||||||||||||||
Sbjct: 11434372 gcctcgctgcccgacct 11434356
Score = 58.0 bits (29), Expect = 3e-05
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 340 ccgcctcacaccgttgtcccgcatcctggtgcacggtgtcgtagcggatgagcatcatag 399
||||||||| ||| |||||||||||||||| |||| ||||| || || ||||| |||||
Sbjct: 11629489 ccgcctcactccgctgtcccgcatcctggttgacggcgtcgtcgccgacgagcaccatag 11629430
Query: 400 ccaga 404
|||||
Sbjct: 11629429 ccaga 11629425
Score = 56.0 bits (28), Expect = 1e-04
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 86 gagctgctgcaggcacaggcagacctgtggcgccacagcctctactac 133
||||||||||| |||||||| || || |||||||||||||||| ||||
Sbjct: 11518790 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctac 11518743
Score = 50.1 bits (25), Expect = 0.008
Identities = 136/173 (78%)
Strand = Plus / Minus
Query: 342 gcctcacaccgttgtcccgcatcctggtgcacggtgtcgtagcggatgagcatcatagcc 401
||||||| ||| ||||||||||||| || | || ||||| || || ||||| || ||||
Sbjct: 11573788 gcctcaccccgctgtcccgcatcctcgtcgatggcgtcgtcgccgacgagcaccacagcc 11573729
Query: 402 agaagtattttgtgctcggcgtgacctcgccgcattacacggaggcggcgatggggctgg 461
||| || || ||||||| || ||| |||| ||| ||| ||||||||| |||||||||
Sbjct: 11573728 agacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcgctggggctgg 11573669
Query: 462 ccggctggttcaggaaagaccatgagccgccggtgccgtcgccattcgaggac 514
|| ||||||||||| ||| | ||||||| | ||||| || |||||||||
Sbjct: 11573668 acgagtggttcaggaaggacgtggcgccgccgctcccgtccccgttcgaggac 11573616
Score = 48.1 bits (24), Expect = 0.031
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 173 atcccgactgccatccaccgcctcggcggggcggcctcgctgcccgacctgatggccgcg 232
||||| || |||||||||||| |||||| || || ||||||||||||||| | ||||
Sbjct: 11518703 atccccaccgccatccaccgcgccggcggcgccgcgtcgctgcccgacctggttaccgct 11518644
Query: 233 ctgtccct 240
||||||||
Sbjct: 11518643 ctgtccct 11518636
Score = 44.1 bits (22), Expect = 0.48
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 cgccggtgccgtcgccattcgaggac 514
|||||||||||||||| |||||||||
Sbjct: 11629340 cgccggtgccgtcgccgttcgaggac 11629315
Score = 44.1 bits (22), Expect = 0.48
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 337 ctaccgcctcacaccgttgtcccgcatcct 366
|||||||||||| ||| |||||||||||||
Sbjct: 7204718 ctaccgcctcaccccgctgtcccgcatcct 7204689
Score = 44.1 bits (22), Expect = 0.48
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 cgccggtgccgtcgccattcgaggac 514
|||||||||||||||| |||||||||
Sbjct: 7204545 cgccggtgccgtcgccgttcgaggac 7204520
Score = 42.1 bits (21), Expect = 1.9
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 442 ggaggcggcgatggggctggccggctggttcaggaaagacc 482
|||||||||||||||||| || | ||||||| |||| ||||
Sbjct: 11434118 ggaggcggcgatggggctcgcggactggttcgggaaggacc 11434078
>gb|AC135793.4 | Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
Length = 128418
Score = 145 bits (73), Expect = 2e-31
Identities = 139/161 (86%)
Strand = Plus / Plus
Query: 41 gcaatggcggctcaggcacagaccatagaggttcccacagacgctgagctgctgcaggca 100
|||||||||| |||||| | || |||||||||||||| ||||||||||||||||| ||
Sbjct: 4637 gcaatggcggatcaggctaacacaatagaggttcccactgacgctgagctgctgcaagcg 4696
Query: 101 caggcagacctgtggcgccacagcctctactacctctcctccatggccctccggtgcgcc 160
||||| || ||||||||||||||||||||||||||| |||||| || ||||| ||||||
Sbjct: 4697 caggccgatctgtggcgccacagcctctactacctcacctccacgggactccgctgcgcc 4756
Query: 161 gtcgagctcgagatcccgactgccatccaccgcctcggcgg 201
|| |||| | ||||| || ||||||||||||||||||||
Sbjct: 4757 atcaagctgggcatccccaccgccatccaccgcctcggcgg 4797
Score = 129 bits (65), Expect = 1e-26
Identities = 113/129 (87%)
Strand = Plus / Minus
Query: 73 tcccacagacgctgagctgctgcaggcacaggcagacctgtggcgccacagcctctacta 132
|||||| |||| ||| || || ||||| ||||| |||||||||||||||||||||||||
Sbjct: 17268 tcccactgacgatgaactcctacaggcgcaggccaacctgtggcgccacagcctctacta 17209
Query: 133 cctctcctccatggccctccggtgcgccgtcgagctcgagatcccgactgccatccaccg 192
|||| |||||||||| ||||||||||||||| |||||| ||||| || | |||||||||
Sbjct: 17208 cctcacctccatggcgctccggtgcgccgtcaagctcggcatccccacagtcatccaccg 17149
Query: 193 cctcggcgg 201
|||||||||
Sbjct: 17148 cctcggcgg 17140
Score = 56.0 bits (28), Expect = 1e-04
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 86 gagctgctgcaggcacaggcagacctgtggcgccacagcctctactac 133
||||||||||| |||||||| || || |||||||||||||||| ||||
Sbjct: 59936 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctac 59983
Score = 50.1 bits (25), Expect = 0.008
Identities = 136/173 (78%)
Strand = Plus / Plus
Query: 342 gcctcacaccgttgtcccgcatcctggtgcacggtgtcgtagcggatgagcatcatagcc 401
||||||| ||| ||||||||||||| || | || ||||| || || ||||| || ||||
Sbjct: 4938 gcctcaccccgctgtcccgcatcctcgtcgatggcgtcgtcgccgacgagcaccacagcc 4997
Query: 402 agaagtattttgtgctcggcgtgacctcgccgcattacacggaggcggcgatggggctgg 461
||| || || ||||||| || ||| |||| ||| ||| ||||||||| |||||||||
Sbjct: 4998 agacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcgctggggctgg 5057
Query: 462 ccggctggttcaggaaagaccatgagccgccggtgccgtcgccattcgaggac 514
|| ||||||||||| ||| | ||||||| | ||||| || |||||||||
Sbjct: 5058 acgagtggttcaggaaggacgtggcgccgccgctcccgtccccgttcgaggac 5110
Score = 48.1 bits (24), Expect = 0.031
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 173 atcccgactgccatccaccgcctcggcggggcggcctcgctgcccgacctgatggccgcg 232
||||| || |||||||||||| |||||| || || ||||||||||||||| | ||||
Sbjct: 60023 atccccaccgccatccaccgcgccggcggcgccgcgtcgctgcccgacctggttaccgct 60082
Query: 233 ctgtccct 240
||||||||
Sbjct: 60083 ctgtccct 60090
>gb|AC004707.1 |AC004707 Homo sapiens chromosome 17, clone hRPC.117_B_12, complete sequence
Length = 123585
Score = 40.1 bits (20), Expect = 7.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgctgcaggcacaggcagac 109
||||||||||||||||||||
Sbjct: 20504 tgctgcaggcacaggcagac 20523
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,797,097
Number of Sequences: 3902068
Number of extensions: 3797097
Number of successful extensions: 74660
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72326
Number of HSP's gapped (non-prelim): 2324
length of query: 550
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 527
effective length of database: 17,143,297,704
effective search space: 9034517890008
effective search space used: 9034517890008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)